ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrol... 31 2.1
2IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrol... 30 2.7
3RIBD_CHLPN (Q9Z735) Riboflavin biosynthesis protein ribD [Includ... 29 6.0
4ITA3_HUMAN (P26006) Integrin alpha-3 precursor (Galactoprotein B... 29 7.8
5IBB_VICAN (P01065) Bowman-Birk type proteinase inhibitor (VAI) 29 7.8

>IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC|
           3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine
           nucleosidase) (Nonspecific nucleoside hydrolase)
          Length = 313

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 485 LHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 372
           +HDP  +   +DP++MT     V ++ +G +T G+TV D
Sbjct: 238 VHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVVD 276



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>IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrolase (EC|
           3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine
           nucleosidase) (Nonspecific nucleoside hydrolase)
          Length = 314

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 485 LHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 372
           +HDP  +   +DPS+MT     V ++  G +T G+TV D
Sbjct: 239 VHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVAD 277



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>RIBD_CHLPN (Q9Z735) Riboflavin biosynthesis protein ribD [Includes:|
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (EC 3.5.4.26) (Riboflavin-specific deaminase);
           5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
           1.1.1.193) (HTP reductase)]
          Length = 376

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 464 LAAVDPSLMTYTEGVVRVQTDG---ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDA 294
           L A  P  M Y +  +RV  D    +     VFD T  T    TE C +  +KV  ++D 
Sbjct: 209 LTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKTSPTLYVTTERCPENYIKVLDSLDV 268

Query: 293 PAVV 282
           P ++
Sbjct: 269 PVLL 272



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>ITA3_HUMAN (P26006) Integrin alpha-3 precursor (Galactoprotein B3) (GAPB3)|
           (VLA-3 alpha chain) (FRP-2) (CD49c antigen) [Contains:
           Integrin alpha-3 heavy chain; Integrin alpha-3 light
           chain]
          Length = 1066

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +2

Query: 323 LAYHTTLLSHHTFSWYCRKP*D---PL*FHLSEPSRLPPCKSSAMDLRRQ 463
           L Y T +  H   SW CR P D   PL   LS+P   P   SS    RRQ
Sbjct: 830 LLYPTEITVHGNGSWPCRPPGDLINPLNLTLSDPGDRP---SSPQRRRRQ 876



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>IBB_VICAN (P01065) Bowman-Birk type proteinase inhibitor (VAI)|
          Length = 72

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 312 CCHSRCPCCRGAHYAEASHG*LKHFVCNTALKIQEHICQCW 190
           C  S+ P CR     E  H    H VCN +   Q   CQC+
Sbjct: 14  CTRSQPPTCRCVDVGERCHSACNHCVCNYSNPPQ---CQCF 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,207,960
Number of Sequences: 219361
Number of extensions: 1374057
Number of successful extensions: 3604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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