Clone Name | rbart40c12 |
---|---|
Clone Library Name | barley_pub |
>IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 313 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -2 Query: 485 LHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 372 +HDP + +DP++MT V ++ +G +T G+TV D Sbjct: 238 VHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVVD 276
>IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 314 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = -2 Query: 485 LHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 372 +HDP + +DPS+MT V ++ G +T G+TV D Sbjct: 239 VHDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVAD 277
>RIBD_CHLPN (Q9Z735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 376 Score = 29.3 bits (64), Expect = 6.0 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = -2 Query: 464 LAAVDPSLMTYTEGVVRVQTDG---ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDA 294 L A P M Y + +RV D + VFD T T TE C + +KV ++D Sbjct: 209 LTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKTSPTLYVTTERCPENYIKVLDSLDV 268 Query: 293 PAVV 282 P ++ Sbjct: 269 PVLL 272
>ITA3_HUMAN (P26006) Integrin alpha-3 precursor (Galactoprotein B3) (GAPB3)| (VLA-3 alpha chain) (FRP-2) (CD49c antigen) [Contains: Integrin alpha-3 heavy chain; Integrin alpha-3 light chain] Length = 1066 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +2 Query: 323 LAYHTTLLSHHTFSWYCRKP*D---PL*FHLSEPSRLPPCKSSAMDLRRQ 463 L Y T + H SW CR P D PL LS+P P SS RRQ Sbjct: 830 LLYPTEITVHGNGSWPCRPPGDLINPLNLTLSDPGDRP---SSPQRRRRQ 876
>IBB_VICAN (P01065) Bowman-Birk type proteinase inhibitor (VAI)| Length = 72 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -1 Query: 312 CCHSRCPCCRGAHYAEASHG*LKHFVCNTALKIQEHICQCW 190 C S+ P CR E H H VCN + Q CQC+ Sbjct: 14 CTRSQPPTCRCVDVGERCHSACNHCVCNYSNPPQ---CQCF 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,207,960 Number of Sequences: 219361 Number of extensions: 1374057 Number of successful extensions: 3604 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3603 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)