ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart40c12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1279 Score = 184 bits (93), Expect = 2e-43 Identities = 204/241 (84%) Strand = Plus / Minus Query: 248 aatcatccgtgagaagcctctgcataatgagctccacgacagcaggggcatcgactgtga 307 |||||||||| |||||||||||| || | |||||| || ||||| ||||| || || | Sbjct: 1035 aatcatccgtcgtaagcctctgcatgatcatctccacaacggcaggagcatcaacggtca 976 Query: 308 cagcaaccttcacggttggcttaccacaccactctgttatctcaccatacgttttcttgg 367 ||||||||||||||||||||||||| |||| | |||||||| |||||| ||||||||| Sbjct: 975 cagcaaccttcacggttggcttaccggtccacgcagttatctccccataccttttcttgg 916 Query: 368 tattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctcacgactccct 427 | |||||||||| ||||||||||||||||| ||||| ||||| |||||||| || || | Sbjct: 915 ttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctcactacacctt 856 Query: 428 ccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggatcatgaagat 487 |||||||||||||||| || |||||||| || |||| ||| |||| ||||| ||||||| Sbjct: 855 ccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggatcgtgaagat 796 Query: 488 a 488 | Sbjct: 795 a 795
>dbj|AK061895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G08, full insert sequence Length = 1321 Score = 184 bits (93), Expect = 2e-43 Identities = 204/241 (84%) Strand = Plus / Minus Query: 248 aatcatccgtgagaagcctctgcataatgagctccacgacagcaggggcatcgactgtga 307 |||||||||| |||||||||||| || | |||||| || ||||| ||||| || || | Sbjct: 1077 aatcatccgtcgtaagcctctgcatgatcatctccacaacggcaggagcatcaacggtca 1018 Query: 308 cagcaaccttcacggttggcttaccacaccactctgttatctcaccatacgttttcttgg 367 ||||||||||||||||||||||||| |||| | |||||||| |||||| ||||||||| Sbjct: 1017 cagcaaccttcacggttggcttaccggtccacgcagttatctccccataccttttcttgg 958 Query: 368 tattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctcacgactccct 427 | |||||||||| ||||||||||||||||| ||||| ||||| |||||||| || || | Sbjct: 957 ttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctcactacacctt 898 Query: 428 ccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggatcatgaagat 487 |||||||||||||||| || |||||||| || |||| ||| |||| ||||| ||||||| Sbjct: 897 ccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggatcgtgaagat 838 Query: 488 a 488 | Sbjct: 837 a 837
>dbj|AK101293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G23, full insert sequence Length = 1359 Score = 184 bits (93), Expect = 2e-43 Identities = 204/241 (84%) Strand = Plus / Minus Query: 248 aatcatccgtgagaagcctctgcataatgagctccacgacagcaggggcatcgactgtga 307 |||||||||| |||||||||||| || | |||||| || ||||| ||||| || || | Sbjct: 1117 aatcatccgtcgtaagcctctgcatgatcatctccacaacggcaggagcatcaacggtca 1058 Query: 308 cagcaaccttcacggttggcttaccacaccactctgttatctcaccatacgttttcttgg 367 ||||||||||||||||||||||||| |||| | |||||||| |||||| ||||||||| Sbjct: 1057 cagcaaccttcacggttggcttaccggtccacgcagttatctccccataccttttcttgg 998 Query: 368 tattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctcacgactccct 427 | |||||||||| ||||||||||||||||| ||||| ||||| |||||||| || || | Sbjct: 997 ttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctcactacacctt 938 Query: 428 ccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggatcatgaagat 487 |||||||||||||||| || |||||||| || |||| ||| |||| ||||| ||||||| Sbjct: 937 ccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggatcgtgaagat 878 Query: 488 a 488 | Sbjct: 877 a 877
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Minus Query: 359 ttttcttggtattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctca 418 |||||||||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||| Sbjct: 5203 ttttcttggttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctca 5144 Query: 419 cgactccctccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggat 478 | || || ||||||||||||||||| || |||||||| || |||| ||| |||| |||| Sbjct: 5143 ctacaccttccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggat 5084 Query: 479 catgaagata 488 | |||||||| Sbjct: 5083 cgtgaagata 5074 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/110 (83%) Strand = Plus / Minus Query: 248 aatcatccgtgagaagcctctgcataatgagctccacgacagcaggggcatcgactgtga 307 |||||||||| |||||||||||| || | |||||| || ||||| ||||| || || | Sbjct: 5844 aatcatccgtcgtaagcctctgcatgatcatctccacaacggcaggagcatcaacggtca 5785 Query: 308 cagcaaccttcacggttggcttaccacaccactctgttatctcaccatac 357 ||||||||||||||||||||||||| |||| | |||||||| |||||| Sbjct: 5784 cagcaaccttcacggttggcttaccggtccacgcagttatctccccatac 5735
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 359 ttttcttggtattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctca 418 |||||||||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||| Sbjct: 17558540 ttttcttggttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctca 17558599 Query: 419 cgactccctccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggat 478 | || || ||||||||||||||||| || |||||||| || |||| ||| |||| |||| Sbjct: 17558600 ctacaccttccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggat 17558659 Query: 479 catgaagata 488 | |||||||| Sbjct: 17558660 cgtgaagata 17558669 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 248 aatcatccgtgagaagcctctgcataatgagctccacgacagcaggggcatcgactgtga 307 |||||||||| |||||||||||| || | |||||| || ||||| ||||| || || | Sbjct: 17557899 aatcatccgtcgtaagcctctgcatgatcatctccacaacggcaggagcatcaacggtca 17557958 Query: 308 cagcaaccttcacggttggcttaccacaccactctgttatctcaccatac 357 ||||||||||||||||||||||||| |||| | |||||||| |||||| Sbjct: 17557959 cagcaaccttcacggttggcttaccggtccacgcagttatctccccatac 17558008
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Minus Query: 359 ttttcttggtattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctca 418 |||||||||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||| Sbjct: 96537 ttttcttggttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctca 96478 Query: 419 cgactccctccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggat 478 | || || ||||||||||||||||| || |||||||| || |||| ||| |||| |||| Sbjct: 96477 ctacaccttccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggat 96418 Query: 479 catgaagata 488 | |||||||| Sbjct: 96417 cgtgaagata 96408 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 279 ctccacgacagcaggggcatcgactgtgacagcaaccttcacggttggcttaccacacca 338 |||||| || ||||| ||||| || || |||||||||||||||||||||||||| ||| Sbjct: 97147 ctccacaacggcaggagcatcaacggtcacagcaaccttcacggttggcttaccggtcca 97088 Query: 339 ctctgttatctcaccatac 357 | | |||||||| |||||| Sbjct: 97087 cgcagttatctccccatac 97069
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 1e-22 Identities = 112/130 (86%) Strand = Plus / Plus Query: 359 ttttcttggtattgtcgaaaaccgtgagaccctttgtgattccatctgtctgaaccctca 418 |||||||||| |||||||||| ||||||||||||||||| ||||| ||||| ||||||| Sbjct: 17552081 ttttcttggttgtgtcgaaaactgtgagaccctttgtgatgccatcagtctgcaccctca 17552140 Query: 419 cgactccctccgtgtaagtcatcagcgatggatctacggcggcaagaagagttgtgggat 478 | || || ||||||||||||||||| || |||||||| || |||| ||| |||| |||| Sbjct: 17552141 ctacaccttccgtgtaagtcatcagtgacggatctaccgcagcaataagtgttgctggat 17552200 Query: 479 catgaagata 488 | |||||||| Sbjct: 17552201 cgtgaagata 17552210 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 248 aatcatccgtgagaagcctctgcataatgagctccacgacagcaggggcatcgactgtga 307 |||||||||| |||||||||||| || | |||||| || ||||| ||||| || || | Sbjct: 17551440 aatcatccgtcgtaagcctctgcatgatcatctccacaacggcaggagcatcaacggtca 17551499 Query: 308 cagcaaccttcacggttggcttaccacaccactctgttatctcaccatac 357 ||||||||||||||||||||||||| |||| | |||||||| |||||| Sbjct: 17551500 cagcaaccttcacggttggcttaccggtccacgcagttatctccccatac 17551549
>emb|AL590648.9| Human DNA sequence from clone RP11-338C15 on chromosome 1 Contains the 3' end of the ATF3 gene for activating transcription factor 3, three novel genes (FLJ32796) (FLJ40118) and a riboflavin kinase pseudogene, complete sequence Length = 65096 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 248 aatcatccgtgagaagcctctgc 270 ||||||||||||||||||||||| Sbjct: 36381 aatcatccgtgagaagcctctgc 36403
>emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chromosome 1q31.1-31.3, complete sequence Length = 107328 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 ttgatttcattcccaaaaggta 185 |||||||||||||||||||||| Sbjct: 38244 ttgatttcattcccaaaaggta 38223
>ref|NM_033402.2| Homo sapiens leucine rich repeat and coiled-coil domain containing 1 (LRRCC1), mRNA Length = 3256 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagtattgaactacaaaagaa 152 ||||||||||||||||||||| Sbjct: 2889 aagtattgaactacaaaagaa 2909
>gb|BC070092.1| Homo sapiens leucine rich repeat and coiled-coil domain containing 1, mRNA (cDNA clone MGC:87502 IMAGE:5272572), complete cds Length = 3256 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagtattgaactacaaaagaa 152 ||||||||||||||||||||| Sbjct: 2889 aagtattgaactacaaaagaa 2909
>gb|BC030701.2| Homo sapiens KIAA1764 protein, mRNA (cDNA clone IMAGE:4837403), partial cds Length = 3814 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagtattgaactacaaaagaa 152 ||||||||||||||||||||| Sbjct: 2904 aagtattgaactacaaaagaa 2924
>emb|AL161655.8| Human DNA sequence from clone RP11-116E13 on chromosome 20 Contains part of a novel gene, GSSs and STSs, complete sequence Length = 105191 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 aaatgttcaagtgttgaacta 88 ||||||||||||||||||||| Sbjct: 41929 aaatgttcaagtgttgaacta 41949 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 tgtaaatgttcaagtattgaacta 144 ||||||||||||||| |||||||| Sbjct: 41926 tgtaaatgttcaagtgttgaacta 41949 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 tgtaaatgttcaagtgttgcacta 116 ||||||||||||||||||| |||| Sbjct: 41926 tgtaaatgttcaagtgttgaacta 41949
>emb|BX049818.1|CNS09ALQ Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC25DG06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 698 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 attgcaaacgaaatgtttcaa 249 ||||||||||||||||||||| Sbjct: 190 attgcaaacgaaatgtttcaa 210
>emb|BX049817.1|CNS09ALP Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC25DG06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 808 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 attgcaaacgaaatgtttcaa 249 ||||||||||||||||||||| Sbjct: 655 attgcaaacgaaatgtttcaa 635
>gb|AC027373.11| Homo sapiens chromosome 8, clone RP11-521I2, complete sequence Length = 140783 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 agaccctttgtgattccatct 405 ||||||||||||||||||||| Sbjct: 124732 agaccctttgtgattccatct 124752
>gb|AC150798.3| Medicago truncatula chromosome 2 BAC clone mth2-33b11, complete sequence Length = 120992 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 taatccaacattgacaaatat 206 ||||||||||||||||||||| Sbjct: 103493 taatccaacattgacaaatat 103473 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tataatccaacattgacaaa 203 |||||||||||||||||||| Sbjct: 90848 tataatccaacattgacaaa 90829
>dbj|AK057990.1| Homo sapiens cDNA FLJ25261 fis, clone STM04691 Length = 2124 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagtattgaactacaaaagaa 152 ||||||||||||||||||||| Sbjct: 1286 aagtattgaactacaaaagaa 1306
>gb|AF015664.1|AF015664 Phoneutria nigriventer Tx3-2 neurotoxin (Tx3-2) mRNA, complete cds Length = 465 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 342 tgttatctcaccatacgttttcttg 366 |||||||||| |||||||||||||| Sbjct: 372 tgttatctcatcatacgttttcttg 396
>gb|AC079093.16| Homo sapiens chromosome 8, clone RP11-265H5, complete sequence Length = 141612 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 agaccctttgtgattccatct 405 ||||||||||||||||||||| Sbjct: 83270 agaccctttgtgattccatct 83250
>dbj|AP004195.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1434A12 Length = 151834 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 agaccctttgtgattccatct 405 ||||||||||||||||||||| Sbjct: 99338 agaccctttgtgattccatct 99318
>dbj|AB051551.1| Homo sapiens mRNA for KIAA1764 protein, partial cds Length = 4490 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagtattgaactacaaaagaa 152 ||||||||||||||||||||| Sbjct: 3652 aagtattgaactacaaaagaa 3672
>gb|AC115968.10| Mus musculus chromosome 1, clone RP24-72P6, complete sequence Length = 229959 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 agagttgtgggatcatgaag 485 |||||||||||||||||||| Sbjct: 202305 agagttgtgggatcatgaag 202324
>ref|NM_001039828.1| Danio rerio peptide transporter PEPT2 (slc15a2), mRNA Length = 3238 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 agtgtaaatgttcaagtgtt 110 |||||||||||||||||||| Sbjct: 2940 agtgtaaatgttcaagtgtt 2921
>gb|AC096643.2| Homo sapiens chromosome 1 clone RP11-408A22, complete sequence Length = 163962 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 aactgaagtgaaaatggact 39 |||||||||||||||||||| Sbjct: 11787 aactgaagtgaaaatggact 11768
>gb|DQ192597.1| Danio rerio peptide transporter PEPT2 (slc15a2) mRNA, complete cds Length = 3238 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 agtgtaaatgttcaagtgtt 110 |||||||||||||||||||| Sbjct: 2940 agtgtaaatgttcaagtgtt 2921
>gb|AC119212.15| Mus musculus chromosome 1, clone RP24-192L21, complete sequence Length = 174380 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 agagttgtgggatcatgaag 485 |||||||||||||||||||| Sbjct: 8409 agagttgtgggatcatgaag 8428
>gb|DQ295239.1| Uncultured marine bacterium Ant24C4, partial genomic sequence Length = 43501 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tgagaccctttgtgattcca 402 |||||||||||||||||||| Sbjct: 37536 tgagaccctttgtgattcca 37555
>gb|AC153606.3| Mus musculus 6 BAC RP23-252F12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203410 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 gtaagtcatcagcgatggat 451 |||||||||||||||||||| Sbjct: 199895 gtaagtcatcagcgatggat 199876
>ref|XM_392454.2| PREDICTED: Apis mellifera similar to alpha-2-macroglobulin (LOC408926), mRNA Length = 5524 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gacaaatatgttcttgaatc 217 |||||||||||||||||||| Sbjct: 3539 gacaaatatgttcttgaatc 3558
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tattgaactacaaaagaaga 154 |||||||||||||||||||| Sbjct: 28754231 tattgaactacaaaagaaga 28754212
>gb|AC007389.7| Homo sapiens BAC clone RP11-418H16 from 2, complete sequence Length = 209197 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ggggcatcgactgtgacagc 311 |||||||||||||||||||| Sbjct: 18731 ggggcatcgactgtgacagc 18750
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tattgaactacaaaagaaga 154 |||||||||||||||||||| Sbjct: 70804 tattgaactacaaaagaaga 70785
>gb|AC153994.8| Mus musculus 6 BAC RP24-178H18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179333 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 gtaagtcatcagcgatggat 451 |||||||||||||||||||| Sbjct: 146082 gtaagtcatcagcgatggat 146101
>gb|AC004053.1|AC004053 Homo sapiens chromosome 4 clone B211A1 map 4q25, complete sequence Length = 166900 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 tccaacattgacaaatatgt 208 |||||||||||||||||||| Sbjct: 41913 tccaacattgacaaatatgt 41894
>gb|AC171399.2| Mus musculus chromosome 5, clone wi1-2751O13, complete sequence Length = 37863 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ttcttgaatcttgagtgcag 227 |||||||||||||||||||| Sbjct: 30849 ttcttgaatcttgagtgcag 30868
>gb|AC170994.2| Mus musculus chromosome 5, clone wi1-1202G12, complete sequence Length = 42126 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ttcttgaatcttgagtgcag 227 |||||||||||||||||||| Sbjct: 24768 ttcttgaatcttgagtgcag 24749
>gb|AC170186.3| Mus musculus chromosome 5, clone wi1-1070G1, complete sequence Length = 37126 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ttcttgaatcttgagtgcag 227 |||||||||||||||||||| Sbjct: 33299 ttcttgaatcttgagtgcag 33280
>dbj|AP001955.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2002L2, complete sequence Length = 88753 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 tccaacattgacaaatatgt 208 |||||||||||||||||||| Sbjct: 80978 tccaacattgacaaatatgt 80997 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,225,597 Number of Sequences: 3902068 Number of extensions: 4225597 Number of successful extensions: 79019 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78878 Number of HSP's gapped (non-prelim): 141 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
