>MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate receptor precursor|
           (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like
           growth factor 2 receptor) (Insulin-like growth factor II
           receptor) (IGF-II receptor) (300 kDa mannose 6-phosphate
           receptor)
          Length = 2499

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = -2

Query: 426 SSNQSRGRRKTKPTHTRNKAATQFSSGDQCAREHAICRNRMEITLHC-----IIAVIITI 262
           + +++ GR  + PT  +      +S GD+C     I  N   ITL C       A ++T 
Sbjct: 552 NGSKNLGRFISSPTREKGNIQLSYSDGDECGGGQKIITN---ITLMCKPGDLESAPVLTT 608

Query: 261 SRTKGARIILDGRT 220
           SR  G     + RT
Sbjct: 609 SRADGCFYEFEWRT 622

>SRPR_PSEPU (Q9R9T9) HTH-type transcriptional regulator srpR (Solvent efflux|
           pump srpABC operon corepressor)
          Length = 213

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -3

Query: 389 QLILATRRQPNSVQATNVHESTPSAGI--AWKSHYIAXXXXXXXSAERRVHASYWMAGRD 216
           Q +LA+R+ P  +      + TP  GI  +W++  +A          ++        G D
Sbjct: 60  QAVLASRQHPLEL------DFTPDLGIERSWEAVVVAMLDAVHSPQSKQFSEILIYQGLD 113

Query: 215 ESKRMRERMISSAGHFQSCTHTLL 144
           ES  +  RM+ ++  F    H +L
Sbjct: 114 ESGLIHNRMVQASDRFLQYIHQVL 137

>GBRB4_CHICK (P24045) Gamma-aminobutyric-acid receptor beta-4 subunit precursor|
           (GABA(A) receptor)
          Length = 488

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = -1

Query: 397 DEANSYSQQGGNPIQFRRPMCTRARHLPESHGNHITLXXXXXXHDQQNEGCTHHIGWQDA 218
           D  NS     G+ IQFR+P+ +R     +  G+H TL         ++   THH     A
Sbjct: 392 DSRNSVMSFEGSGIQFRKPLASR-----DGFGHHPTL--------DRHVPLTHHAA---A 435

Query: 217 MNRRGC 200
            NR  C
Sbjct: 436 RNRANC 441


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,300,356
Number of Sequences: 219361
Number of extensions: 1303164
Number of successful extensions: 2871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)