ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AK072568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
4emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial se... 56 1e-04
5gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
8emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 46 0.10
9emb|CR354441.11| Zebrafish DNA sequence from clone CH211-152P23 ... 44 0.41
10gb|AC140118.11| Homo sapiens 12 BAC RP13-507P19 (Roswell Park Ca... 44 0.41
11ref|NM_121478.2| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE 2)... 42 1.6
12ref|NM_001036807.1| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE... 42 1.6
13ref|NM_001036806.1| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE... 42 1.6
14ref|NM_203053.2| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE 2)... 42 1.6
15gb|BT000663.1| Arabidopsis thaliana clone RAFL09-37-L06 (R18764)... 42 1.6
16gb|BT000652.1| Arabidopsis thaliana clone RAFL09-38-M18 (R18712)... 42 1.6
17gb|AF326863.1| Arabidopsis thaliana putative carbonic anhydrase ... 42 1.6
18emb|AL391149.1|ATT9L3 Arabidopsis thaliana DNA chromosome 5, BAC... 42 1.6
19gb|AF428428.1|AF428428 Arabidopsis thaliana AT5g14740/T9L3_40 mR... 42 1.6
20gb|AF324712.2|AF324712 Arabidopsis thaliana AT5g14740 (AT5g14740... 42 1.6
21emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in... 42 1.6
22emb|BX831315.1|CNS09ZIL Arabidopsis thaliana Full-length cDNA Co... 42 1.6
23emb|BX830347.1|CNS09YOI Arabidopsis thaliana Full-length cDNA Co... 42 1.6
24gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cance... 42 1.6
25gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, co... 42 1.6
26gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, co... 42 1.6
27gb|L18901.1|ATHCAH Arabidopsis thaliana carbonic anhydrase (ca18... 42 1.6
28ref|XM_466150.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
29gb|BT017156.1| Zea mays clone EL01N0367F12.c mRNA sequence 40 6.4
30gb|AC102597.22| Mus musculus chromosome 18, clone RP23-361H2, co... 40 6.4
31gb|BT017938.1| Zea mays clone EL01N0520G10.c mRNA sequence 40 6.4
32gb|BT017861.1| Zea mays clone EL01N0511G07.c mRNA sequence 40 6.4
33gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
34gb|AE009275.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 6.4
35gb|AE008336.1| Agrobacterium tumefaciens str. C58 linear chromos... 40 6.4
36gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.4
37gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.4
38gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genom... 40 6.4
39gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.4
40gb|AC025198.12| Homo sapiens chromosome 17, clone RP11-766H1, co... 40 6.4
41gb|AC111399.4| Rattus norvegicus Mcs BAC CH230-138L13 (Children'... 40 6.4
42gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.4
43gb|AC096975.5| Rattus norvegicus 2 BAC CH230-203P11 (Children's ... 40 6.4
44gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.4
45dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana... 40 6.4
48dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
49dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
50emb|BX005099.9| Zebrafish DNA sequence from clone CH211-140M20 i... 40 6.4
51dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
52dbj|AK121233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
53emb|X92375.1|ZMATP164 Z.mays mRNA for V-type H+-ATPase, clone 16-4 40 6.4
54emb|X92374.1|ZMATP162 Z.mays mRNA for V-type H+-ATPase, clone 16-2 40 6.4
55dbj|AK105044.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
56dbj|AK099459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
57emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, c... 40 6.4
58gb|AY106139.1| Zea mays PCO154307 mRNA sequence 40 6.4
59emb|CR354534.15| Zebrafish DNA sequence from clone CH211-140C18 ... 40 6.4
60gb|U27098.1|OSU27098 Oryza sativa vacuolar H+-ATPase (vatp-P1) m... 40 6.4 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                       
Query: 436     tcagctgcagagcttgacggtgcacgccaccgcctgcgcc 475
               ||||||||||||| ||||||||||||| || |||||||||
Sbjct: 7130664 tcagctgcagagcctgacggtgcacgcgacggcctgcgcc 7130625
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>dbj|AK072568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131I01, full
           insert sequence
          Length = 1174

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 436 tcagctgcagagcttgacggtgcacgccaccgcctgcgcc 475
           ||||||||||||| ||||||||||||| || |||||||||
Sbjct: 721 tcagctgcagagcctgacggtgcacgcgacggcctgcgcc 682
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                       
Query: 436     tcagctgcagagcttgacggtgcacgccaccgcctgcgcc 475
               ||||||||||||| ||||||||||||| || |||||||||
Sbjct: 7130543 tcagctgcagagcctgacggtgcacgcgacggcctgcgcc 7130504
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>emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial sequence from chromosome 12 of
             cultivar Nipponbare of ssp. japonica of Oryza sativa
             (rice), complete sequence
          Length = 45687

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 436   tcagctgcagagcttgacggtgcacgccaccgcctgcgcc 475
             ||||||||||||| ||||||||||||| || |||||||||
Sbjct: 38964 tcagctgcagagcctgacggtgcacgcgacggcctgcgcc 38925
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>gb|AC133006.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0072N24 map C61883S, complete sequence
          Length = 163337

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 438   agctgcagagcttgacggtgcacgccaccgcctgcgcc 475
             ||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 62038 agctgcaaagcctgacggtgcacgcgaccgcctgcgcc 62001
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 438     agctgcagagcttgacggtgcacgccaccgcctgcgcc 475
               ||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 9968257 agctgcaaagcctgacggtgcacgcgaccgcctgcgcc 9968220



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     tgatgatgacggcgatgatg 286
               ||||||||||||||||||||
Sbjct: 3359997 tgatgatgacggcgatgatg 3360016
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 438      agctgcagagcttgacggtgcacgccaccgcctgcgcc 475
                ||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 10039954 agctgcaaagcctgacggtgcacgcgaccgcctgcgcc 10039917



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     tgatgatgacggcgatgatg 286
               ||||||||||||||||||||
Sbjct: 3368702 tgatgatgacggcgatgatg 3368721
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>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 257   ctgctgatcgtgatgatgacggc 279
             |||||||||||||||||||||||
Sbjct: 19636 ctgctgatcgtgatgatgacggc 19658
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>emb|CR354441.11| Zebrafish DNA sequence from clone CH211-152P23 in linkage group 8,
             complete sequence
          Length = 113575

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 58    ttgtgtgtttacatgaatgaat 79
             ||||||||||||||||||||||
Sbjct: 96049 ttgtgtgtttacatgaatgaat 96070
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>gb|AC140118.11| Homo sapiens 12 BAC RP13-507P19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 62172

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 261   tgatcgtgatgatgacggcgatgatg 286
             |||| |||||||||||||||||||||
Sbjct: 34357 tgatggtgatgatgacggcgatgatg 34382
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>ref|NM_121478.2| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE 2); carbonate
            dehydratase/ zinc ion binding AT5G14740 (CA2) transcript
            variant AT5G14740.1 mRNA, complete cds
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 258  tgctgatcgtgatgatgacggcgatgatg 286
            |||||||| ||||||||||| ||||||||
Sbjct: 1356 tgctgatcatgatgatgacgacgatgatg 1328
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>ref|NM_001036807.1| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE 2); carbonate
            dehydratase/ zinc ion binding AT5G14740 (CA2) transcript
            variant AT5G14740.4 mRNA, complete cds
          Length = 1511

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 258  tgctgatcgtgatgatgacggcgatgatg 286
            |||||||| ||||||||||| ||||||||
Sbjct: 1353 tgctgatcatgatgatgacgacgatgatg 1325
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>ref|NM_001036806.1| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE 2); carbonate
            dehydratase/ zinc ion binding AT5G14740 (CA2) transcript
            variant AT5G14740.3 mRNA, complete cds
          Length = 1511

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 258  tgctgatcgtgatgatgacggcgatgatg 286
            |||||||| ||||||||||| ||||||||
Sbjct: 1353 tgctgatcatgatgatgacgacgatgatg 1325
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>ref|NM_203053.2| Arabidopsis thaliana CA2 (CARBONIC ANHYDRASE 2); carbonate
            dehydratase/ zinc ion binding AT5G14740 (CA2) transcript
            variant AT5G14740.2 mRNA, complete cds
          Length = 1519

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 258  tgctgatcgtgatgatgacggcgatgatg 286
            |||||||| ||||||||||| ||||||||
Sbjct: 1361 tgctgatcatgatgatgacgacgatgatg 1333
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>gb|BT000663.1| Arabidopsis thaliana clone RAFL09-37-L06 (R18764) putative carbonic
           anhydrase (At5g14740) mRNA, complete cds
          Length = 1096

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 953 tgctgatcatgatgatgacgacgatgatg 925
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>gb|BT000652.1| Arabidopsis thaliana clone RAFL09-38-M18 (R18712) putative carbonic
           anhydrase (At5g14740) mRNA, complete cds
          Length = 1092

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 949 tgctgatcatgatgatgacgacgatgatg 921
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>gb|AF326863.1| Arabidopsis thaliana putative carbonic anhydrase 2 (At5g14740)
           mRNA, complete cds
          Length = 1080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 951 tgctgatcatgatgatgacgacgatgatg 923
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>emb|AL391149.1|ATT9L3 Arabidopsis thaliana DNA chromosome 5, BAC clone T9L3 (ESSA project)
          Length = 89370

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 258   tgctgatcgtgatgatgacggcgatgatg 286
             |||||||| ||||||||||| ||||||||
Sbjct: 29576 tgctgatcatgatgatgacgacgatgatg 29548
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>gb|AF428428.1|AF428428 Arabidopsis thaliana AT5g14740/T9L3_40 mRNA, complete cds
          Length = 1096

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 992 tgctgatcatgatgatgacgacgatgatg 964
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>gb|AF324712.2|AF324712 Arabidopsis thaliana AT5g14740 (AT5g14740/T9L3_40) mRNA, complete
           cds
          Length = 1064

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 951 tgctgatcatgatgatgacgacgatgatg 923
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>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12,
             complete sequence
          Length = 171920

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tgtgtgtttacatgaatgaat 79
             |||||||||||||||||||||
Sbjct: 52086 tgtgtgtttacatgaatgaat 52106
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>emb|BX831315.1|CNS09ZIL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS78ZC08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1278

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 258  tgctgatcgtgatgatgacggcgatgatg 286
            |||||||| ||||||||||| ||||||||
Sbjct: 1189 tgctgatcatgatgatgacgacgatgatg 1161
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>emb|BX830347.1|CNS09YOI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZA01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1011

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 924 tgctgatcatgatgatgacgacgatgatg 896
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>gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 157653

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 258   tgctgatcgtgatgatgacggcgatgatg 286
             ||||||| ||||||||||||| |||||||
Sbjct: 37726 tgctgatggtgatgatgacggtgatgatg 37754
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>gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, complete sequence
          Length = 185933

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 17     attattatttccaatgaattgagaa 41
              ||||||||| |||||||||||||||
Sbjct: 146906 attattattcccaatgaattgagaa 146882
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>gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, complete sequence
          Length = 209792

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 17     attattatttccaatgaattgagaa 41
              ||||||||| |||||||||||||||
Sbjct: 197427 attattattcccaatgaattgagaa 197451
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>gb|L18901.1|ATHCAH Arabidopsis thaliana carbonic anhydrase (ca180) mRNA, complete cds
          Length = 1015

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 258 tgctgatcgtgatgatgacggcgatgatg 286
           |||||||| ||||||||||| ||||||||
Sbjct: 888 tgctgatcatgatgatgacgacgatgatg 860
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>ref|XM_466150.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 883

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 367 tgatgatgacggcgatgatg 348
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>gb|BT017156.1| Zea mays clone EL01N0367F12.c mRNA sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 328 tgatgatgacggcgatgatg 309
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>gb|AC102597.22| Mus musculus chromosome 18, clone RP23-361H2, complete sequence
          Length = 204401

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     attattattatttccaatga 33
              ||||||||||||||||||||
Sbjct: 128344 attattattatttccaatga 128325
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>gb|BT017938.1| Zea mays clone EL01N0520G10.c mRNA sequence
          Length = 983

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 378 tgatgatgacggcgatgatg 359
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>gb|BT017861.1| Zea mays clone EL01N0511G07.c mRNA sequence
          Length = 1094

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 412 tgatgatgacggcgatgatg 393
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>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0073K23 map near R10571S, complete sequence
          Length = 161073

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tgatgatgacggcgatgatg 286
             ||||||||||||||||||||
Sbjct: 54297 tgatgatgacggcgatgatg 54278
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>gb|AE009275.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 45 of 187
             of the complete sequence
          Length = 12969

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   tgcgattccggcagatggcg 325
             ||||||||||||||||||||
Sbjct: 11966 tgcgattccggcagatggcg 11947
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>gb|AE008336.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 140 of
            187 of the complete sequence
          Length = 12674

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  tgcgattccggcagatggcg 325
            ||||||||||||||||||||
Sbjct: 9796 tgcgattccggcagatggcg 9815
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 261    tgatcgtgatgatgacggcgatga 284
              ||||||||||||||| ||||||||
Sbjct: 485442 tgatcgtgatgatgatggcgatga 485465
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     ttctgctgatcgtgatgatg 274
               ||||||||||||||||||||
Sbjct: 5981689 ttctgctgatcgtgatgatg 5981670
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>gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete
             sequence
          Length = 90341

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 369   ccttgttgcgagtatgagttggct 392
             |||| |||||||||||||||||||
Sbjct: 86623 ccttattgcgagtatgagttggct 86600
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 261     tgatcgtgatgatgacggcg 280
               ||||||||||||||||||||
Sbjct: 1937515 tgatcgtgatgatgacggcg 1937496
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>gb|AC025198.12| Homo sapiens chromosome 17, clone RP11-766H1, complete sequence
          Length = 198524

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tcctctctcgcatcctcttc 210
             ||||||||||||||||||||
Sbjct: 46705 tcctctctcgcatcctcttc 46724
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>gb|AC111399.4| Rattus norvegicus Mcs BAC CH230-138L13 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 210984

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tgatgatgacggcgatgatg 286
             ||||||||||||||||||||
Sbjct: 73703 tgatgatgacggcgatgatg 73722
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     aatggccggccgatgaaatc 189
               ||||||||||||||||||||
Sbjct: 2787020 aatggccggccgatgaaatc 2787039
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>gb|AC096975.5| Rattus norvegicus 2 BAC CH230-203P11 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 213875

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tgatgatgacggcgatgatg 286
              ||||||||||||||||||||
Sbjct: 157264 tgatgatgacggcgatgatg 157283
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     tgatcgtgatgatgacggcg 280
               ||||||||||||||||||||
Sbjct: 4285681 tgatcgtgatgatgacggcg 4285700
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 267     tgatgatgacggcgatgatgcaat 290
               ||||||||||| ||||||||||||
Sbjct: 1754392 tgatgatgacgacgatgatgcaat 1754369
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 267      tgatgatgacggcgatgatg 286
                ||||||||||||||||||||
Sbjct: 20706821 tgatgatgacggcgatgatg 20706840
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>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I,
              complete sequence
          Length = 120977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 369    ccttgttgcgagtatgagttggct 392
              |||| |||||||||||||||||||
Sbjct: 109023 ccttattgcgagtatgagttggct 109046
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>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0451A10
          Length = 137046

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tgatgatgacggcgatgatg 286
             ||||||||||||||||||||
Sbjct: 57927 tgatgatgacggcgatgatg 57946
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>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1118_D07
          Length = 131449

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 267  tgatgatgacggcgatgatgcaat 290
            ||||||||||| ||||||||||||
Sbjct: 6611 tgatgatgacgacgatgatgcaat 6588
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>emb|BX005099.9| Zebrafish DNA sequence from clone CH211-140M20 in linkage group 24,
            complete sequence
          Length = 59459

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   gtgtgtttacatgaatgaat 79
            ||||||||||||||||||||
Sbjct: 8952 gtgtgtttacatgaatgaat 8933
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>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0040I22
          Length = 134273

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tgatgatgacggcgatgatg 286
              ||||||||||||||||||||
Sbjct: 103676 tgatgatgacggcgatgatg 103695
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>dbj|AK121233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093E21, full
           insert sequence
          Length = 935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 331 tgatgatgacggcgatgatg 312
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>emb|X92375.1|ZMATP164 Z.mays mRNA for V-type H+-ATPase, clone 16-4
          Length = 228

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 61  tgatgatgacggcgatgatg 42
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>emb|X92374.1|ZMATP162 Z.mays mRNA for V-type H+-ATPase, clone 16-2
          Length = 228

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 61  tgatgatgacggcgatgatg 42
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>dbj|AK105044.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-H05, full
           insert sequence
          Length = 1025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 400 tgatgatgacggcgatgatg 381
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>dbj|AK099459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023C24, full
           insert sequence
          Length = 883

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 367 tgatgatgacggcgatgatg 348
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>emb|AL935180.9| Zebrafish DNA sequence from clone CH211-227I1, complete sequence
          Length = 159007

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    agaccgattattattatttc 27
            ||||||||||||||||||||
Sbjct: 7974 agaccgattattattatttc 7955
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>gb|AY106139.1| Zea mays PCO154307 mRNA sequence
          Length = 1097

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 461 tgatgatgacggcgatgatg 442
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>emb|CR354534.15| Zebrafish DNA sequence from clone CH211-140C18 in linkage group 23,
             complete sequence
          Length = 189794

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gtgtgtttacatgaatgaat 79
             ||||||||||||||||||||
Sbjct: 12079 gtgtgtttacatgaatgaat 12060
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>gb|U27098.1|OSU27098 Oryza sativa vacuolar H+-ATPase (vatp-P1) mRNA, complete cds
          Length = 915

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 tgatgatgacggcgatgatg 286
           ||||||||||||||||||||
Sbjct: 341 tgatgatgacggcgatgatg 322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,064,230
Number of Sequences: 3902068
Number of extensions: 5064230
Number of successful extensions: 78526
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78071
Number of HSP's gapped (non-prelim): 455
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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