Clone Name	rbart40c08
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase m...	153	5e-34
2	gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferas...	105	1e-19
3	gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full ...	98	2e-17
4	gb|AF153826.1|AF153826 Festuca arundinacea comt3 caffeic acid O-...	90	6e-15
5	gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O...	90	6e-15
6	gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltrans...	70	6e-09
7	gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O...	66	9e-08
8	gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O...	66	9e-08
9	gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltrans...	66	9e-08
10	gb|AF010291.1|AF010291 Lolium perenne bispecific caffeic acid/5-...	58	2e-05
11	emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic ...	48	0.020
12	gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyl...	48	0.020
13	gb|AC158943.9| Mus musculus chromosome 1, clone RP24-272N10, com...	44	0.32
14	gb|AC104890.16| Mus musculus chromosome 1, clone RP23-260J11, co...	44	0.32
15	gb|AF139533.1|AF139533 Liquidambar styraciflua caffeate O-methyl...	44	0.32
16	gb|AF004877.1| Homo sapiens pro-alpha 2(I) collagen (COL1A2) gen...	42	1.3
17	gb|DQ001169.1| Acacia mangium x Acacia auriculiformis caffeic ac...	42	1.3
18	gb|AF543567.1| Macaca fascicularis collagen COL1A2 gene, exons 4...	42	1.3
19	emb|AL138831.12| Human DNA sequence from clone RP3-406P24 on chr...	42	1.3
20	dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
21	gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094...	42	1.3
22	gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14...	42	1.3
23	gb|AC103817.6| Homo sapiens chromosome 8, clone CTD-3083F21, com...	42	1.3
24	gb|AC002528.1|AC002528 Human BAC clone GS1-542D18 from 7q31-q32,...	42	1.3
25	gb|AC171642.3| Rhesus Macaque BAC CH250-405K12 (Children's Hosp...	42	1.3
26	gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome...	42	1.3
27	emb|AL833478.1|HSM804791 Homo sapiens mRNA; cDNA DKFZp686B1029 (...	42	1.3
28	emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chro...	42	1.3
29	gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome	40	5.0
30	gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mit...	40	5.0
31	gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion...	40	5.0
32	gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion...	40	5.0
33	emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chro...	40	5.0
34	gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosom...	40	5.0
35	gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosom...	40	5.0
36	gb|AC138448.9| Medicago truncatula clone mth2-11n13, complete se...	40	5.0
37	emb|Z83001.1|HSG0453 Human DNA sequence from clone XX-G0453 on c...	40	5.0
38	emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on ch...	40	5.0
39	emb|AL136373.21| Human DNA sequence from clone RP11-49P4 on chro...	40	5.0
40	emb|CR933734.10| Zebrafish DNA sequence from clone DKEY-287I17 i...	40	5.0
41	emb|Z00026.1|MIZMATP1 Maize mitochondrial gene for F1-ATPase alp...	40	5.0
42	emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete...	40	5.0
43	emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome	40	5.0
44	emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple...	40	5.0
45	emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS...	40	5.0
46	emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) com...	40	5.0
47	emb|AJ278690.1|SBI278690 Sorghum bicolor partial mitochondrial m...	40	5.0
48	emb|AJ278689.1|SBI278689 Sorghum bicolor partial mitochondrial m...	40	5.0
49	emb|AL663035.8| Mouse DNA sequence from clone RP23-432G17 on chr...	40	5.0
50	emb|CR387929.4| Zebrafish DNA sequence from clone DKEY-172H18 in...	40	5.0
51	gb|AC084871.4| Homo sapiens BAC clone RP11-701P16 from 4, comple...	40	5.0
52	gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, compl...	40	5.0
53	emb|BX511101.3| Zebrafish DNA sequence from clone DKEYP-92F1 in ...	40	5.0
54	ref|XM_395084.2| PREDICTED: Apis mellifera similar to CG5811-PA ...	40	5.0
55	gb|AY124521.1| Luzula acuminata ATPase F1 alpha subunit (atp1) g...	40	5.0
56	gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5,...	40	5.0
57	emb|AL929026.10| Mouse DNA sequence from clone RP23-332K7 on chr...	40	5.0
58	emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in...	40	5.0
59	gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete...	40	5.0
60	dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	5.0
61	gb|M16222.1|MZEMTATP Maize mitochondrial ATP-alpha gene encoding...	40	5.0
62	emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1...	40	5.0

---

>gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase mRNA, complete cds
          Length = 1233

 Score =  153 bits (77), Expect = 5e-34
 Identities = 119/133 (89%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            |||||||||||| ||||| || |||||||||||  |||| |||||||| | ||| |||| 
Sbjct: 1148 catctacttagtgaactcgatggcccatgcgttggcgtagatgtaagtagtcttcatggc 1089

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 1088 ggcgaacccggcgcccttggccagggcctcgaactccctctcgtacctctccctgccacc 1029

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1028 cgggttgtgcgcg 1016

---

>gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferase (COMT1) mRNA,
            complete cds
          Length = 1371

 Score =  105 bits (53), Expect = 1e-19
 Identities = 116/137 (84%)
 Strand = Plus / Minus

                                                                        
Query: 236  catgcatctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttga 295
            |||| |||||||| || ||||| || ||  |||||||  |||| |||||||||| |||||
Sbjct: 1163 catggatctacttggtgaactcgatggcaaatgcgttggcgtagatgtaagtggtcttga 1104

                                                                        
Query: 296  tggaggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctac 355
            |||    ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 1103 tggctttgaagccggcgcccttggccagggcctcgaactccctctcgtacctctccctgc 1044

                             
Query: 356  cacctgggttgtgcgcg 372
            | || ||||||||||||
Sbjct: 1043 cgccggggttgtgcgcg 1027

---

>gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full insert mRNA sequence
          Length = 1314

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                        
Query: 236  catgcatctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttga 295
            |||| |||||||| || ||||| || ||  |||||||  |||| ||||| |||| |||||
Sbjct: 1083 catggatctacttggtgaactcgatggcaaatgcgttggcgtagatgtaggtggtcttga 1024

                                                                        
Query: 296  tggaggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctac 355
            |||    ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 1023 tggctttgaagccggcgcccttggccagggcctcgaactccctctcgtacctctccctgc 964

                             
Query: 356  cacctgggttgtgcgcg 372
            | || ||||||||||||
Sbjct: 963  cgccggggttgtgcgcg 947

---

>gb|AF153826.1|AF153826 Festuca arundinacea comt3 caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1430

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 111/133 (83%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            ||||||||| || ||||| || ||||| |||||  |||| ||||| |||| ||||| |  
Sbjct: 1163 catctacttggtgaactcgatggcccaggcgttggcgtagatgtatgtggacttgaagcc 1104

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            |||||| || || |||||||| || ||||| ||||||||||| ||||||||||| |||||
Sbjct: 1103 ggcgaagccagctcccttggcgagcgcctcgaactccctctcgtacctctccctgccacc 1044

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1043 ggggttgtgcgcg 1031

---

>gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1440

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 111/133 (83%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            ||||||||| || ||||| || ||||| |||||  |||| ||||| |||| ||||| |  
Sbjct: 1156 catctacttggtgaactcgatggcccacgcgtttgcgtagatgtacgtggacttgacgcc 1097

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            || |||||| || ||| ||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 1096 ggtgaacccagctcccctggccagggcctcgaactccctctcgtacctctccctgccgcc 1037

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1036 ggggttgtgcgcg 1024

---

>gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltransferase (OMT3) mRNA, complete
            cds
          Length = 1436

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 107/131 (81%)
 Strand = Plus / Minus

                                                                        
Query: 242  tctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatggagg 301
            ||||||| || ||||| || ||||| |||||  |||| ||||| |||| ||||| |  ||
Sbjct: 1172 tctacttggtgaactcgatggcccaggcgttggcgtagatgtatgtggacttgaagccgg 1113

                                                                        
Query: 302  cgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacctg 361
            |||| || || ||| |||| || |||||  |||||||||| ||||||||||| || ||||
Sbjct: 1112 cgaagccagctcccctggcgagcgcctcgtactccctctcgtacctctccctgccgcctg 1053

                       
Query: 362  ggttgtgcgcg 372
            |||||||||||
Sbjct: 1052 ggttgtgcgcg 1042

---

>gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1438

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 108/133 (81%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            ||||||||| || ||||| || ||||| |||||  |||| ||||| |||| ||||| |  
Sbjct: 1147 catctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgcc 1088

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            || ||| ||||| ||| |||| || ||||| |||||||| || ||||||||||| || ||
Sbjct: 1087 ggtgaagccggctcccctggcgagcgcctcgaactccctttcgtacctctccctgccgcc 1028

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1027 ggggttgtgcgcg 1015

---

>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA,
            complete cds
          Length = 1446

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 108/133 (81%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            ||||||||| || ||||| || ||||| |||||  |||| ||||| |||| ||||| |  
Sbjct: 1130 catctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgcc 1071

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            || ||| ||||| ||| |||| || ||||  ||||||||||| ||||||||||| || ||
Sbjct: 1070 ggtgaatccggctcccctggcgagagcctggaactccctctcgtacctctccctgccgcc 1011

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1010 ggggttgtgcgcg 998

---

>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete
            cds
          Length = 1455

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 108/133 (81%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            ||||||||| || ||||| || ||||| |||||  |||| ||||| |||| ||||| |  
Sbjct: 1137 catctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgcc 1078

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            || ||| ||||| ||| |||| || ||||  ||||||||||| ||||||||||| || ||
Sbjct: 1077 ggtgaatccggctcccctggcgagagcctggaactccctctcgtacctctccctgccgcc 1018

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1017 ggggttgtgcgcg 1005

---

>gb|AF010291.1|AF010291 Lolium perenne bispecific caffeic acid/5-hydroxyferulic acid
            O-methyltransferase mRNA, complete cds
          Length = 1475

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 107/133 (80%)
 Strand = Plus / Minus

                                                                        
Query: 240  catctacttagttaactccattgcccatgcgttaacgtaaatgtaagtggccttgatgga 299
            ||||||||| || ||||| || ||||| |||||  |||| ||||| |||| |||||    
Sbjct: 1156 catctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacacc 1097

                                                                        
Query: 300  ggcgaacccggcgcccttggccagggcctcaaactccctctcatacctctccctaccacc 359
            || ||| ||||| ||| |||| || ||||  ||||||||||| ||||||||||| || ||
Sbjct: 1096 ggtgaatccggctcccctggcgagagcctggaactccctctcgtacctctccctgccccc 1037

                         
Query: 360  tgggttgtgcgcg 372
             ||||||||||||
Sbjct: 1036 ggggttgtgcgcg 1024

---

>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase
          Length = 1486

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 96/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  aactccattgcccatgcgttaacgtaaatgtaagtggccttgatggaggcgaacccggcg 312
            ||||| || ||||| |||||  |||| ||||| ||||||||||    || ||||||||||
Sbjct: 1183 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaacccggcg 1124

                                                                        
Query: 313  cccttggccagggcctcaaactccctctcatacctctccctaccacctgggttgtgcgcg 372
            |||||||| ||| | |  ||||||| ||| |||| |||||| || || ||||| ||||||
Sbjct: 1123 cccttggcgaggtcgtggaactcccgctcgtaccgctccctgccgccggggttatgcgcg 1064

---

>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT)
            gene, complete cds
          Length = 2012

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 96/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 253  aactccattgcccatgcgttaacgtaaatgtaagtggccttgatggaggcgaacccggcg 312
            ||||| || ||||| |||||  |||| ||||| ||||||||||    || ||||||||||
Sbjct: 2002 aactcgatggcccaggcgttggcgtagatgtaggtggccttgaacccggagaacccggcg 1943

                                                                        
Query: 313  cccttggccagggcctcaaactccctctcatacctctccctaccacctgggttgtgcgcg 372
            |||||||| ||| | |  ||||||| ||| |||| |||||| || || ||||| ||||||
Sbjct: 1942 cccttggcgaggtcgtggaactcccgctcgtaccgctccctgccgccggggttatgcgcg 1883

---

>gb|AC158943.9| Mus musculus chromosome 1, clone RP24-272N10, complete sequence
          Length = 186003

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 245  acttagttaactccattgccca 266
            ||||||||||||||||||||||
Sbjct: 8731 acttagttaactccattgccca 8752

---

>gb|AC104890.16| Mus musculus chromosome 1, clone RP23-260J11, complete sequence
          Length = 211081

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 245    acttagttaactccattgccca 266
              ||||||||||||||||||||||
Sbjct: 113549 acttagttaactccattgccca 113570

---

>gb|AF139533.1|AF139533 Liquidambar styraciflua caffeate O-methyltransferase (COMT) mRNA,
            complete cds
          Length = 1377

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 313  cccttggccagggcctcaaactccctctca 342
            |||||||||| ||||||||||||| |||||
Sbjct: 1094 cccttggccaaggcctcaaactccttctca 1065

---

>gb|AF004877.1| Homo sapiens pro-alpha 2(I) collagen (COL1A2) gene, complete cds
          Length = 38682

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 93    gaccaatggcacaacaattaaaaat 117
             |||||||||||||||| ||||||||
Sbjct: 31437 gaccaatggcacaacatttaaaaat 31413

---

>gb|DQ001169.1| Acacia mangium x Acacia auriculiformis caffeic acid
            O-methyltransferase mRNA, complete cds
          Length = 1408

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 313  cccttggccagggcctcaaactccctctcatacctctccctaccacctgggtt 365
            ||||||||||| |||||||||||  |||||  ||||||  | |||||||||||
Sbjct: 1093 cccttggccagagcctcaaactctttctcagtcctctctttgccacctgggtt 1041

---

>gb|AF543567.1| Macaca fascicularis collagen COL1A2 gene, exons 40 and 41 and partial
            cds; and Alu Sq and L1MA4 repeat regions
          Length = 1299

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 93   gaccaatggcacaacaattaaaaat 117
            |||||||||||||||| ||||||||
Sbjct: 1062 gaccaatggcacaacatttaaaaat 1038

---

>emb|AL138831.12| Human DNA sequence from clone RP3-406P24 on chromosome 6 Contains a
             thioredoxin-like pseudogene, the gene for thioredoxin-like
             2 (TXNL2), a novel gene and the 5' end of the gene for
             serine/threonine-protein kinase PRP4 homolog (PRP4),(PR4H,
             PRP4H, KIAA0536). Contains 2 CpG islands, complete
             sequence
          Length = 49600

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   ggagcagcaatgagcatgcaa 217
             |||||||||||||||||||||
Sbjct: 20280 ggagcagcaatgagcatgcaa 20300

---

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 97       aatggcacaacaattaaaaat 117
                |||||||||||||||||||||
Sbjct: 16967528 aatggcacaacaattaaaaat 16967548

---

>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence,
            complete sequence
          Length = 135216

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 97   aatggcacaacaattaaaaat 117
            |||||||||||||||||||||
Sbjct: 8020 aatggcacaacaattaaaaat 8040

---

>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   acaacaattaaaaattggaat 123
             |||||||||||||||||||||
Sbjct: 71434 acaacaattaaaaattggaat 71454

---

>gb|AC103817.6| Homo sapiens chromosome 8, clone CTD-3083F21, complete sequence
          Length = 203148

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   ttggccagggcctcaaactcc 336
             |||||||||||||||||||||
Sbjct: 73188 ttggccagggcctcaaactcc 73208

---

>gb|AC002528.1|AC002528 Human BAC clone GS1-542D18 from 7q31-q32, complete sequence
          Length = 141120

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 93    gaccaatggcacaacaattaaaaat 117
             |||||||||||||||| ||||||||
Sbjct: 18556 gaccaatggcacaacatttaaaaat 18532

---

>gb|AC171642.3| Rhesus Macaque  BAC CH250-405K12 (Children's Hospital Oakland
            Research Institute Rhesus macaque Adult Male BAC Library)
            complete sequence
          Length = 138125

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 93   gaccaatggcacaacaattaaaaat 117
            |||||||||||||||| ||||||||
Sbjct: 9383 gaccaatggcacaacatttaaaaat 9407

---

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 97       aatggcacaacaattaaaaat 117
                |||||||||||||||||||||
Sbjct: 16976568 aatggcacaacaattaaaaat 16976588

---

>emb|AL833478.1|HSM804791 Homo sapiens mRNA; cDNA DKFZp686B1029 (from clone DKFZp686B1029)
          Length = 5990

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 93   gaccaatggcacaacaattaaaaat 117
            |||||||||||||||| ||||||||
Sbjct: 1655 gaccaatggcacaacatttaaaaat 1631

---

>emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chromosome 2, complete
              sequence
          Length = 189104

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 140    aaattaagggaaaacataggg 160
              |||||||||||||||||||||
Sbjct: 170272 aaattaagggaaaacataggg 170252

---

>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome
          Length = 569630

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     catcatatataattaatgca 54
              ||||||||||||||||||||
Sbjct: 523998 catcatatataattaatgca 524017



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     catcatatataattaatgca 54
              ||||||||||||||||||||
Sbjct: 455061 catcatatataattaatgca 455080

---

>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete
              genome
          Length = 701046

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     catcatatataattaatgca 54
              ||||||||||||||||||||
Sbjct: 643780 catcatatataattaatgca 643799

---

>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome
          Length = 569553

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     catcatatataattaatgca 54
              ||||||||||||||||||||
Sbjct: 556187 catcatatataattaatgca 556206

---

>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome
          Length = 535825

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    catcatatataattaatgca 54
             ||||||||||||||||||||
Sbjct: 54575 catcatatataattaatgca 54594

---

>emb|CT025576.8| Mouse DNA sequence from clone RP23-286F8 on chromosome 16, complete
            sequence
          Length = 164971

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  aatgaggtccatgtgggagc 201
            ||||||||||||||||||||
Sbjct: 9078 aatgaggtccatgtgggagc 9097

---

>gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosome 13, complete
             sequence
          Length = 160268

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 251   ttaactccattgcccatgcgttaa 274
             |||||||||||||||||| |||||
Sbjct: 89451 ttaactccattgcccatgggttaa 89474

---

>gb|AC154836.2| Mus musculus BAC clone RP24-574D17 from chromosome 16, complete
             sequence
          Length = 150449

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   aatgaggtccatgtgggagc 201
             ||||||||||||||||||||
Sbjct: 79473 aatgaggtccatgtgggagc 79492

---

>gb|AC138448.9| Medicago truncatula clone mth2-11n13, complete sequence
          Length = 112155

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    catatggaatggaccaatgg 101
             ||||||||||||||||||||
Sbjct: 46376 catatggaatggaccaatgg 46357



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    catatggaatggaccaatgg 101
             ||||||||||||||||||||
Sbjct: 39072 catatggaatggaccaatgg 39053



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    catatggaatggaccaatgg 101
             ||||||||||||||||||||
Sbjct: 32824 catatggaatggaccaatgg 32805

---

>emb|Z83001.1|HSG0453 Human DNA sequence from clone XX-G0453 on chromosome 11, complete
             sequence
          Length = 32246

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tcaaaggatgcaaaaattaa 146
             ||||||||||||||||||||
Sbjct: 26735 tcaaaggatgcaaaaattaa 26716

---

>emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a
             novel pseudogene and a novel gene, complete sequence
          Length = 102624

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    atggcacaacaattaaaaat 117
             ||||||||||||||||||||
Sbjct: 70858 atggcacaacaattaaaaat 70839

---

>emb|AL136373.21| Human DNA sequence from clone RP11-49P4 on chromosome 1p32.2-33
             Contains two novel genes (FLJ40412, FLJ32011), the MKNK1
             gene for MAP kinase-interacting serine/threonine kinase 1,
             the gene for MOB3C protein (MOB3C) and the 3' end of the
             ATPAF1 gene for ATP synthase mitochondrial F1 complex
             assembly factor 1, complete sequence
          Length = 121112

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   ctctccctaccacctgggtt 365
             ||||||||||||||||||||
Sbjct: 90353 ctctccctaccacctgggtt 90372

---

>emb|CR933734.10| Zebrafish DNA sequence from clone DKEY-287I17 in linkage group 1,
              complete sequence
          Length = 113760

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 104    caacaattaaaaattggaatgatt 127
              |||| |||||||||||||||||||
Sbjct: 105043 caaccattaaaaattggaatgatt 105066

---

>emb|Z00026.1|MIZMATP1 Maize mitochondrial gene for F1-ATPase alpha-subunit
          Length = 1620

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  catcatatataattaatgca 54
           ||||||||||||||||||||
Sbjct: 907 catcatatataattaatgca 888

---

>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atcatatatcatgaatgatt 33
              ||||||||||||||||||||
Sbjct: 465737 atcatatatcatgaatgatt 465718

---

>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atcatatatcatgaatgatt 33
              ||||||||||||||||||||
Sbjct: 462965 atcatatatcatgaatgatt 462946

---

>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atcatatatcatgaatgatt 33
              ||||||||||||||||||||
Sbjct: 485880 atcatatatcatgaatgatt 485861

---

>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
               hansenii
          Length = 2051428

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 28      atgattgcatcatatataattaatgcaa 55
               ||||| ||||||||||||||| ||||||
Sbjct: 1986287 atgatggcatcatatataattcatgcaa 1986260

---

>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3
          Length = 315079

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    caacaattaaaaattggaat 123
              ||||||||||||||||||||
Sbjct: 151926 caacaattaaaaattggaat 151945

---

>emb|AJ278690.1|SBI278690 Sorghum bicolor partial mitochondrial mRNA for F0-F1 ATPase alpha
           subunit (atpA gene), cultivar 2077A
          Length = 1324

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  catcatatataattaatgca 54
           ||||||||||||||||||||
Sbjct: 784 catcatatataattaatgca 765

---

>emb|AJ278689.1|SBI278689 Sorghum bicolor partial mitochondrial mRNA for F0-F1 ATPase alpha
           subunit (atpA gene), cultivar CS3541
          Length = 1324

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  catcatatataattaatgca 54
           ||||||||||||||||||||
Sbjct: 784 catcatatataattaatgca 765

---

>emb|AL663035.8| Mouse DNA sequence from clone RP23-432G17 on chromosome 11 Contains a
              novel pseudogene, complete sequence
          Length = 203319

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    tcaaaggatgcaaaaattaa 146
              ||||||||||||||||||||
Sbjct: 147829 tcaaaggatgcaaaaattaa 147810

---

>emb|CR387929.4| Zebrafish DNA sequence from clone DKEY-172H18 in linkage group 5,
              complete sequence
          Length = 245364

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      aacatcaaatcatatatcat 25
              ||||||||||||||||||||
Sbjct: 222321 aacatcaaatcatatatcat 222302

---

>gb|AC084871.4| Homo sapiens BAC clone RP11-701P16 from 4, complete sequence
          Length = 203726

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 220    aatacttggaagttatcatgcatc 243
              |||||||| |||||||||||||||
Sbjct: 146884 aatacttgaaagttatcatgcatc 146861

---

>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aattaaaaattggaatgatt 127
             ||||||||||||||||||||
Sbjct: 44842 aattaaaaattggaatgatt 44823

---

>emb|BX511101.3| Zebrafish DNA sequence from clone DKEYP-92F1 in linkage group 2,
             complete sequence
          Length = 81968

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     aacatcaaatcatatatcat 25
             ||||||||||||||||||||
Sbjct: 16480 aacatcaaatcatatatcat 16499

---

>ref|XM_395084.2| PREDICTED: Apis mellifera similar to CG5811-PA (LOC411614), mRNA
          Length = 1281

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   gaccaatggcacaacaatta 112
            ||||||||||||||||||||
Sbjct: 1214 gaccaatggcacaacaatta 1233

---

>gb|AY124521.1| Luzula acuminata ATPase F1 alpha subunit (atp1) gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1235

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  catcatatataattaatgca 54
           ||||||||||||||||||||
Sbjct: 707 catcatatataattaatgca 688

---

>gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5, complete sequence
          Length = 197778

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   caaaaattaagggaaaacat 156
             ||||||||||||||||||||
Sbjct: 40577 caaaaattaagggaaaacat 40596

---

>emb|AL929026.10| Mouse DNA sequence from clone RP23-332K7 on chromosome 2, complete
             sequence
          Length = 124244

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   gtaagtggccttgatggagg 301
             ||||||||||||||||||||
Sbjct: 64001 gtaagtggccttgatggagg 63982

---

>emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in linkage group 20,
             complete sequence
          Length = 200944

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   acaattaaaaattggaatga 125
             ||||||||||||||||||||
Sbjct: 45871 acaattaaaaattggaatga 45890

---

>gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete sequence
          Length = 156833

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   caaaaattaagggaaaacat 156
             ||||||||||||||||||||
Sbjct: 86222 caaaaattaagggaaaacat 86203

---

>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    caaaaattaagggaaaacat 156
              ||||||||||||||||||||
Sbjct: 255530 caaaaattaagggaaaacat 255549

---

>gb|M16222.1|MZEMTATP Maize mitochondrial ATP-alpha gene encoding F1-ATPase alpha
           subunit, complete cds
          Length = 1742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  catcatatataattaatgca 54
           ||||||||||||||||||||
Sbjct: 879 catcatatataattaatgca 860

---

>emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1598Q2, complete sequence
          Length = 116189

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   caaaaattaagggaaaacat 156
             ||||||||||||||||||||
Sbjct: 66964 caaaaattaagggaaaacat 66983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,964,839
Number of Sequences: 3902068
Number of extensions: 3964839
Number of successful extensions: 82864
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 82640
Number of HSP's gapped (non-prelim): 225
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---