ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469858.1| Oryza sativa (japonica cultivar-group), mRNA 200 3e-48
2dbj|AK102620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
3gb|AY831391.1| Oryza sativa (indica cultivar-group) BTH-induced ... 192 8e-46
4gb|AY831390.1| Oryza sativa (indica cultivar-group) BTH-induced ... 192 8e-46
5dbj|AK105764.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 8e-46
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 155 2e-34
7gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 155 2e-34
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
9dbj|AK066083.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
10gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare str... 82 2e-12
11gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence 82 2e-12
12dbj|AK099959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
13ref|XM_213954.3| PREDICTED: Rattus norvegicus nidogen (entactin)... 44 0.45
14gb|AY106533.1| Zea mays PCO124223 mRNA sequence 44 0.45
15gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, c... 42 1.8
16gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 42 1.8
17emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chro... 42 1.8
18ref|NM_119078.3| Arabidopsis thaliana unknown protein AT4G29330 ... 40 7.1
19ref|XM_476355.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.1
20gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 7.1
21gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.1
22gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 7.1
23gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 7.1
24ref|XM_388651.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.1
25gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.1
26gb|AY096457.1| Arabidopsis thaliana unknown protein (At4g29330) ... 40 7.1
27gb|AY063817.1| Arabidopsis thaliana unknown protein (At4g29330) ... 40 7.1
28emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.1
29emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment ... 40 7.1
30emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 40 7.1
31gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.1
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
33emb|BX826348.1|CNS0A38I Arabidopsis thaliana Full-length cDNA Co... 40 7.1
34emb|BX841558.1|CNS09YFE Arabidopsis thaliana Full-length cDNA Co... 40 7.1
35dbj|AB089954.1| Micromonospora griseorubida gene cluster for the... 40 7.1
36dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
37emb|Z36879.1|FPGDCPA F.pringlei gdcsPA gene for P-protein of the... 40 7.1
38emb|Z54239.1|FPGDCSPB F.pringlei gdcsPB gene 40 7.1
39gb|AC153599.6| Mus musculus 6 BAC RP23-227G6 (Roswell Park Cance... 40 7.1
40gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, com... 40 7.1
41gb|U43323.1|ATU43323 Arabidopsis thaliana profilin 2 and profili... 40 7.1 
>ref|XM_469858.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1641

 Score =  200 bits (101), Expect = 3e-48
 Identities = 230/273 (84%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
            ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||
Sbjct: 1196 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacgacccttgt 1137

                                                                        
Query: 310  ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
             || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 1136 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 1077

                                                                        
Query: 370  atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
            |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 1076 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 1017

                                                                        
Query: 430  cgtggcctccttcaaggcggaccgcactaatcggtttgctatacccgttcttgggttctt 489
            |||||| ||||| || |||| |  ||| |||| ||||||||||||||| ||||| |||||
Sbjct: 1016 cgtggcttcctttaaagcggccttcaccaatctgtttgctatacccgtccttggattctt 957

                                             
Query: 490  gaagacaatttgcacagcagcgtcatcgctgag 522
            ||||||||| ||||| |||||||| || |||||
Sbjct: 956  gaagacaatctgcaccgcagcgtcgtcactgag 924
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>dbj|AK102620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H11, full
            insert sequence
          Length = 1532

 Score =  200 bits (101), Expect = 3e-48
 Identities = 230/273 (84%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
            ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||
Sbjct: 1147 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacgacccttgt 1088

                                                                        
Query: 310  ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
             || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 1087 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 1028

                                                                        
Query: 370  atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
            |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 1027 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 968

                                                                        
Query: 430  cgtggcctccttcaaggcggaccgcactaatcggtttgctatacccgttcttgggttctt 489
            |||||| ||||| || |||| |  ||| |||| ||||||||||||||| ||||| |||||
Sbjct: 967  cgtggcttcctttaaagcggccttcaccaatctgtttgctatacccgtccttggattctt 908

                                             
Query: 490  gaagacaatttgcacagcagcgtcatcgctgag 522
            ||||||||| ||||| |||||||| || |||||
Sbjct: 907  gaagacaatctgcaccgcagcgtcgtcactgag 875
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>gb|AY831391.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase
            2C 2 K3 form (BIPP2C2) mRNA, complete cds, alternatively
            spliced
          Length = 1326

 Score =  192 bits (97), Expect = 8e-46
 Identities = 229/273 (83%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
            ||||||||||||||||||||||||| ||||||||||||| |||||||| || ||| | ||
Sbjct: 1023 ggaggagtagatgtcgacgggggcgttggtgcagttgctactcgagtcgacgacccttgt 964

                                                                        
Query: 310  ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
             || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 963  gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 904

                                                                        
Query: 370  atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
            |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 903  atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 844

                                                                        
Query: 430  cgtggcctccttcaaggcggaccgcactaatcggtttgctatacccgttcttgggttctt 489
            |||||| ||||| || |||| |  ||| |||| ||||||||||||||| ||||| |||||
Sbjct: 843  cgtggcttcctttaaagcggccttcaccaatctgtttgctatacccgtccttggattctt 784

                                             
Query: 490  gaagacaatttgcacagcagcgtcatcgctgag 522
            ||||||||| ||||| |||||||| || |||||
Sbjct: 783  gaagacaatctgcaccgcagcgtcgtcactgag 751
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>gb|AY831390.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase
            2C 2 K2 form (BIPP2C2) mRNA, complete cds, alternatively
            spliced
          Length = 1526

 Score =  192 bits (97), Expect = 8e-46
 Identities = 229/273 (83%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
            ||||||||||||||||||||||||| ||||||||||||| |||||||| || ||| | ||
Sbjct: 1125 ggaggagtagatgtcgacgggggcgttggtgcagttgctactcgagtcgacgacccttgt 1066

                                                                        
Query: 310  ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
             || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 1065 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 1006

                                                                        
Query: 370  atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
            |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 1005 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 946

                                                                        
Query: 430  cgtggcctccttcaaggcggaccgcactaatcggtttgctatacccgttcttgggttctt 489
            |||||| ||||| || |||| |  ||| |||| ||||||||||||||| ||||| |||||
Sbjct: 945  cgtggcttcctttaaagcggccttcaccaatctgtttgctatacccgtccttggattctt 886

                                             
Query: 490  gaagacaatttgcacagcagcgtcatcgctgag 522
            ||||||||| ||||| |||||||| || |||||
Sbjct: 885  gaagacaatctgcaccgcagcgtcgtcactgag 853
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>dbj|AK105764.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D12, full
            insert sequence
          Length = 1635

 Score =  192 bits (97), Expect = 8e-46
 Identities = 229/273 (83%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
            ||||||||||||||||||||||||| |||||||||||||||||||||| ||  || | ||
Sbjct: 1250 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacggcccttgt 1191

                                                                        
Query: 310  ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
             || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 1190 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 1131

                                                                        
Query: 370  atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
            |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 1130 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 1071

                                                                        
Query: 430  cgtggcctccttcaaggcggaccgcactaatcggtttgctatacccgttcttgggttctt 489
            |||||| ||||| || |||| |  ||| |||| ||||||||||||||| ||||| |||||
Sbjct: 1070 cgtggcttcctttaaagcggccttcaccaatctgtttgctatacccgtccttggattctt 1011

                                             
Query: 490  gaagacaatttgcacagcagcgtcatcgctgag 522
            ||||||||| ||||| |||||||| || |||||
Sbjct: 1010 gaagacaatctgcaccgcagcgtcgtcactgag 978
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 189/226 (83%)
 Strand = Plus / Plus

                                                                            
Query: 250      ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
                ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||
Sbjct: 31168638 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacgacccttgt 31168697

                                                                            
Query: 310      ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
                 || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 31168698 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 31168757

                                                                            
Query: 370      atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
                |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 31168758 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 31168817

                                                              
Query: 430      cgtggcctccttcaaggcggaccgcactaatcggtttgctataccc 475
                |||||| ||||| || |||| |  ||| |||| |||||||||||||
Sbjct: 31168818 cgtggcttcctttaaagcggccttcaccaatctgtttgctataccc 31168863



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Plus

                                                                          
Query: 255    agtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggtctggc 314
              ||||||||||||||||| |  ||||||||||| |||| ||||| || ||| |||| || |
Sbjct: 255390 agtagatgtcgacggggccattggtgcagttgatgcttgagtcgacgaccctggtgtgac 255449

                                                                          
Query: 315    gacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaaatggc 374
              | ||||| ||||| ||||| ||||| || |||| ||  |||||||||||||||||| |||
Sbjct: 255450 ggcgaccacggtggcggtcaaggtagacgacgatgatgctgatgtcgtcgtggaaacggc 255509

               
Query: 375    g 375
              |
Sbjct: 255510 g 255510



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                            
Query: 474    ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgct 519
              |||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 255720 ccgttcttggattcttgaagacaatctgcaccgcagcgtcatcgct 255765



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 474      ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgctgag 522
                |||| ||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct: 31168985 ccgtccttggattcttgaagacaatctgcaccgcagcgtcgtcactgag 31169033
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score =  155 bits (78), Expect = 2e-34
 Identities = 189/226 (83%)
 Strand = Plus / Plus

                                                                         
Query: 250   ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
             ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||
Sbjct: 89279 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacgacccttgt 89338

                                                                         
Query: 310   ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
              || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 89339 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 89398

                                                                         
Query: 370   atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
             |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 89399 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 89458

                                                           
Query: 430   cgtggcctccttcaaggcggaccgcactaatcggtttgctataccc 475
             |||||| ||||| || |||| |  ||| |||| |||||||||||||
Sbjct: 89459 cgtggcttcctttaaagcggccttcaccaatctgtttgctataccc 89504



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 474   ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgctgag 522
             |||| ||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct: 89626 ccgtccttggattcttgaagacaatctgcaccgcagcgtcgtcactgag 89674
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 189/226 (83%)
 Strand = Plus / Plus

                                                                            
Query: 250      ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
                ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||
Sbjct: 31259161 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacgacccttgt 31259220

                                                                            
Query: 310      ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
                 || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 31259221 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 31259280

                                                                            
Query: 370      atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
                |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 31259281 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 31259340

                                                              
Query: 430      cgtggcctccttcaaggcggaccgcactaatcggtttgctataccc 475
                |||||| ||||| || |||| |  ||| |||| |||||||||||||
Sbjct: 31259341 cgtggcttcctttaaagcggccttcaccaatctgtttgctataccc 31259386



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Plus

                                                                          
Query: 255    agtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggtctggc 314
              ||||||||||||||||| |  ||||||||||| |||| ||||| || ||| |||| || |
Sbjct: 255390 agtagatgtcgacggggccattggtgcagttgatgcttgagtcgacgaccctggtgtgac 255449

                                                                          
Query: 315    gacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaaatggc 374
              | ||||| ||||| ||||| ||||| || |||| ||  |||||||||||||||||| |||
Sbjct: 255450 ggcgaccacggtggcggtcaaggtagacgacgatgatgctgatgtcgtcgtggaaacggc 255509

               
Query: 375    g 375
              |
Sbjct: 255510 g 255510



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                            
Query: 474    ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgct 519
              |||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 255720 ccgttcttggattcttgaagacaatctgcaccgcagcgtcatcgct 255765



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 474      ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgctgag 522
                |||| ||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct: 31259508 ccgtccttggattcttgaagacaatctgcaccgcagcgtcgtcactgag 31259556
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>dbj|AK066083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050O18, full
            insert sequence
          Length = 1776

 Score =  155 bits (78), Expect = 2e-34
 Identities = 189/226 (83%)
 Strand = Plus / Minus

                                                                        
Query: 250  ggaggagtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggt 309
            ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||
Sbjct: 1333 ggaggagtagatgtcgacgggggcgttggtgcagttgctgctcgagtcgacgacccttgt 1274

                                                                        
Query: 310  ctggcgacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaa 369
             || || ||||| ||||| ||||| ||||| || |||| ||| |||||||||||||||||
Sbjct: 1273 gtgacggcgaccgcggtggcggtcaaggtagacgacgatgacgctgatgtcgtcgtggaa 1214

                                                                        
Query: 370  atggcgtcgcacgccccgctctatcgtcctcaggtcgtgcacgctgacctatctcttctt 429
            |||||| | ||| |||  |||||||||| |||| ||  | | ||||||||  |||||| |
Sbjct: 1213 atggcgcctcactcccttctctatcgtcttcagatcacggaagctgacctccctcttcct 1154

                                                          
Query: 430  cgtggcctccttcaaggcggaccgcactaatcggtttgctataccc 475
            |||||| ||||| || |||| |  ||| |||| |||||||||||||
Sbjct: 1153 cgtggcttcctttaaagcggccttcaccaatctgtttgctataccc 1108



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 474 ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgctgag 522
           |||| ||||| |||||||||||||| ||||| |||||||| || |||||
Sbjct: 986 ccgtccttggattcttgaagacaatctgcaccgcagcgtcgtcactgag 938
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>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0080O10, from chromosome 3, complete sequence
          Length = 127917

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Plus

                                                                         
Query: 255   agtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggtctggc 314
             ||||||||||||||||| |  ||||||||||| |||| ||||| || ||| |||| || |
Sbjct: 92457 agtagatgtcgacggggccattggtgcagttgatgcttgagtcgacgaccctggtgtgac 92516

                                                                         
Query: 315   gacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaaatggc 374
             | ||||| ||||| ||||| ||||| || |||| ||  |||||||||||||||||| |||
Sbjct: 92517 ggcgaccacggtggcggtcaaggtagacgacgatgatgctgatgtcgtcgtggaaacggc 92576

              
Query: 375   g 375
             |
Sbjct: 92577 g 92577



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                           
Query: 474   ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgct 519
             |||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 92787 ccgttcttggattcttgaagacaatctgcaccgcagcgtcatcgct 92832
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>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
          Length = 162241

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Minus

                                                                        
Query: 255  agtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggtctggc 314
            ||||||||||||||||| |  ||||||||||| |||| ||||| || ||| |||| || |
Sbjct: 7226 agtagatgtcgacggggccattggtgcagttgatgcttgagtcgacgaccctggtgtgac 7167

                                                                        
Query: 315  gacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaaatggc 374
            | ||||| ||||| ||||| ||||| || |||| ||  |||||||||||||||||| |||
Sbjct: 7166 ggcgaccacggtggcggtcaaggtagacgacgatgatgctgatgtcgtcgtggaaacggc 7107

             
Query: 375  g 375
            |
Sbjct: 7106 g 7106



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 474  ccgttcttgggttcttgaagacaatttgcacagcagcgtcatcgct 519
            |||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 6896 ccgttcttggattcttgaagacaatctgcaccgcagcgtcatcgct 6851
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>dbj|AK099959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126F07, full
            insert sequence
          Length = 1984

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Minus

                                                                        
Query: 255  agtagatgtcgacgggggcgctggtgcagttgctgctcgagtccaccaccttggtctggc 314
            ||||||||||||||||| |  ||||||||||| |||| ||||| || ||| |||| || |
Sbjct: 1747 agtagatgtcgacggggccattggtgcagttgatgcttgagtcgacgaccctggtgtgac 1688

                                                                        
Query: 315  gacgaccccggtgccggtcgaggtacaccacgacgacactgatgtcgtcgtggaaatggc 374
            | ||||| ||||| ||||| ||||| || |||| ||  |||||||||||||||||| |||
Sbjct: 1687 ggcgaccacggtggcggtcaaggtagacgacgatgatgctgatgtcgtcgtggaaacggc 1628

             
Query: 375  g 375
            |
Sbjct: 1627 g 1627



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                        
Query: 422  ctcttcttcgtggcctccttcaaggcggaccgcactaatcggtttgctatacccgttctt 481
            |||||| ||||||| |||||||| |||| |   || | || |||||||| | ||||||||
Sbjct: 1587 ctcttcctcgtggcttccttcaaagcggcctttaccactctgtttgctacatccgttctt 1528

                                                  
Query: 482  gggttcttgaagacaatttgcacagcagcgtcatcgct 519
            || |||||||||||||| ||||| ||||||||||||||
Sbjct: 1527 ggattcttgaagacaatctgcaccgcagcgtcatcgct 1490
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>ref|XM_213954.3| PREDICTED: Rattus norvegicus nidogen (entactin) (Nid), mRNA
          Length = 3774

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 258 agatgtcgacgggggcgctggtgcagttgctgct 291
           |||||| |||| |||||||| |||||||||||||
Sbjct: 29  agatgtggacgtgggcgctgctgcagttgctgct 62
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>gb|AY106533.1| Zea mays PCO124223 mRNA sequence
          Length = 2059

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 331  gtcgaggtacaccacgacgacactgatgtcgtcgtggaaatg 372
            ||||||| |||||||||||||  | || ||||||||||||||
Sbjct: 1507 gtcgaggaacaccacgacgacggttatatcgtcgtggaaatg 1466
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>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome
          Length = 134431

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 424   cttcttcgtggcctccttcaaggcg 448
             ||||||||||| |||||||||||||
Sbjct: 37275 cttcttcgtggactccttcaaggcg 37251
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 271     ggcgctggtgcagttgctgct 291
               |||||||||||||||||||||
Sbjct: 3293389 ggcgctggtgcagttgctgct 3293409
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>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete
              sequence
          Length = 195413

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    ctggacggagctggaggagga 255
              |||||||||||||||||||||
Sbjct: 125110 ctggacggagctggaggagga 125090
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>ref|NM_119078.3| Arabidopsis thaliana unknown protein AT4G29330 mRNA, complete cds
          Length = 1079

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 cggagctggaggaggagtag 259
           ||||||||||||||||||||
Sbjct: 808 cggagctggaggaggagtag 827
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>ref|XM_476355.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 396

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 tctgcaaccctaccaccgtt 142
           ||||||||||||||||||||
Sbjct: 257 tctgcaaccctaccaccgtt 238
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 434     gcctccttcaaggcggaccg 453
               ||||||||||||||||||||
Sbjct: 1314597 gcctccttcaaggcggaccg 1314578
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 266    acgggggcgctggtgcagttgctgctcg 293
              ||||| ||| ||||||||||||||||||
Sbjct: 971698 acgggcgcgatggtgcagttgctgctcg 971671
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 483     ggttcttgaagacaatttgc 502
               ||||||||||||||||||||
Sbjct: 3934912 ggttcttgaagacaatttgc 3934893
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    cgctggtgcagttgctgctc 292
              ||||||||||||||||||||
Sbjct: 537261 cgctggtgcagttgctgctc 537280
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>ref|XM_388651.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08475.1)
            partial mRNA
          Length = 5055

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 424  cttcttcgtggcctccttca 443
            ||||||||||||||||||||
Sbjct: 2850 cttcttcgtggcctccttca 2831
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    cgctggtgcagttgctgctc 292
              ||||||||||||||||||||
Sbjct: 669848 cgctggtgcagttgctgctc 669867
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>gb|AY096457.1| Arabidopsis thaliana unknown protein (At4g29330) mRNA, complete cds
          Length = 832

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 cggagctggaggaggagtag 259
           ||||||||||||||||||||
Sbjct: 693 cggagctggaggaggagtag 712
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>gb|AY063817.1| Arabidopsis thaliana unknown protein (At4g29330) mRNA, complete cds
          Length = 1095

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 cggagctggaggaggagtag 259
           ||||||||||||||||||||
Sbjct: 810 cggagctggaggaggagtag 829
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 266     acgggggcgctggtgcagttgctgctcg 293
               ||||| ||| ||||||||||||||||||
Sbjct: 2290400 acgggcgcgatggtgcagttgctgctcg 2290373
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>emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment 23/24
          Length = 306550

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    cctgagcttctgcggccctt 187
              ||||||||||||||||||||
Sbjct: 216419 cctgagcttctgcggccctt 216400
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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    cggagctggaggaggagtag 259
              ||||||||||||||||||||
Sbjct: 174924 cggagctggaggaggagtag 174943
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 266     acgggggcgctggtgcagttgctgctcg 293
               ||||| ||| ||||||||||||||||||
Sbjct: 1838069 acgggcgcgatggtgcagttgctgctcg 1838042
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tctgcaaccctaccaccgtt 142
              ||||||||||||||||||||
Sbjct: 112546 tctgcaaccctaccaccgtt 112565
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>emb|BX826348.1|CNS0A38I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB18ZD09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 962

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 cggagctggaggaggagtag 259
           ||||||||||||||||||||
Sbjct: 749 cggagctggaggaggagtag 768
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>emb|BX841558.1|CNS09YFE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH46ZD04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1024

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 cggagctggaggaggagtag 259
           ||||||||||||||||||||
Sbjct: 240 cggagctggaggaggagtag 221
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>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide
             mycinamicin, partial and comeplete cds
          Length = 58343

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   cgaccccggtgccggtcgag 336
             ||||||||||||||||||||
Sbjct: 48111 cgaccccggtgccggtcgag 48092
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tctgcaaccctaccaccgtt 142
              ||||||||||||||||||||
Sbjct: 111845 tctgcaaccctaccaccgtt 111864
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>emb|Z36879.1|FPGDCPA F.pringlei gdcsPA gene for P-protein of the glycine cleavage system
          Length = 8496

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  caccatgatcatatatatag 167
            ||||||||||||||||||||
Sbjct: 6353 caccatgatcatatatatag 6334
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>emb|Z54239.1|FPGDCSPB F.pringlei gdcsPB gene
          Length = 10187

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  caccatgatcatatatatag 167
            ||||||||||||||||||||
Sbjct: 7164 caccatgatcatatatatag 7145
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>gb|AC153599.6| Mus musculus 6 BAC RP23-227G6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203926

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ccaccatgatcatatatata 166
              ||||||||||||||||||||
Sbjct: 136064 ccaccatgatcatatatata 136045
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>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence
          Length = 206641

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 480    ttgggttcttgaagacaatt 499
              ||||||||||||||||||||
Sbjct: 135223 ttgggttcttgaagacaatt 135242
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>gb|U43323.1|ATU43323 Arabidopsis thaliana profilin 2 and profilin 3 genes, complete cds
          Length = 5329

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 240 cggagctggaggaggagtag 259
           ||||||||||||||||||||
Sbjct: 744 cggagctggaggaggagtag 763


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,524,570
Number of Sequences: 3902068
Number of extensions: 3524570
Number of successful extensions: 117686
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117254
Number of HSP's gapped (non-prelim): 431
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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