ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40c01 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 56.2 bits (134), Expect = 4e-08 Identities = 23/35 (65%), Positives = 31/35 (88%) Frame = -1 Query: 481 RYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 377 RY + H+CQFD++ AR+AIAKANPVVKA+K+D+I Sbjct: 134 RYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 53.1 bits (126), Expect = 4e-07 Identities = 21/35 (60%), Positives = 29/35 (82%) Frame = -1 Query: 481 RYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 377 RY +KH+C FD++ RDAIAKANP+VKA+K+ +I Sbjct: 141 RYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 52.0 bits (123), Expect = 8e-07 Identities = 21/32 (65%), Positives = 28/32 (87%) Frame = -1 Query: 481 RYSDKHDCQFDYRTAARDAIAKANPVVKAEKL 386 RYSD+H C +DY++AARDAIA+ NPVV+A K+ Sbjct: 130 RYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/35 (57%), Positives = 25/35 (71%) Frame = -1 Query: 481 RYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 377 RYSDKH+C +DY+ A I K NPVV AEK+ +I Sbjct: 179 RYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/35 (57%), Positives = 25/35 (71%) Frame = -1 Query: 481 RYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 377 RYSDKH+C +DY+ A I K NPVV AEK+ +I Sbjct: 179 RYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 45.8 bits (107), Expect = 6e-05 Identities = 20/35 (57%), Positives = 26/35 (74%) Frame = -1 Query: 481 RYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 377 RY + H C FD+++A R+ IAKANP+V A KL KI Sbjct: 127 RYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>NORQ_PARDE (Q51664) Protein norQ| Length = 270 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -3 Query: 389 ARQDLGVL-QGRNGCNLPRFIIHLCCAILAPPFLVGCH 279 A DL VL +G GC RF+ H+ + P + V CH Sbjct: 32 AANDLPVLLKGPTGCGKTRFVAHMAARLGRPLYTVACH 69
>YVDC_LACLA (Q9CE03) Hypothetical UPF0177 protein yvdC| Length = 261 Score = 31.2 bits (69), Expect = 1.5 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%) Frame = -1 Query: 394 EKLDKI*VSYREEMVAICQGSSSIFAVPSLHLPFLLAATFPKLYGIVM--HTASW----- 236 EKL + YR +V I S +V HLPFL+ A + G++ H + W Sbjct: 5 EKLQSL-AKYRWVIVIILALLFSALSVSIFHLPFLMTALVLSIVGLIFAYHKSVWLVLFI 63 Query: 235 ----QLQELNPFSHSEWFACCVT-LFMVVFSVSIVASH 137 + F++ F T +F ++F ++I++S+ Sbjct: 64 LSNLPMLATTIFAYQHHFTTLDTVIFFIIFLLTIISSY 101
>VG40_ICHV1 (Q00145) Hypothetical gene 40 protein| Length = 136 Score = 29.6 bits (65), Expect = 4.3 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -2 Query: 393 RSSTRFRCPTGKKWLQSAKVHHPSLLCHPCTSLSCWLPHFLNCTAS*CTLRRGS 232 RS++ F C + L ++ PS+ CT+ SCW H L +++ +RR S Sbjct: 26 RSNSWFVCKIVYRCLSPRRIISPSI----CTAFSCWANHGLRLSST-AAMRRSS 74
>IL17E_HUMAN (Q9H293) Interleukin-17E precursor (IL-17E) (Interleukin-25)| (IL-25) Length = 177 Score = 29.3 bits (64), Expect = 5.6 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Frame = +1 Query: 346 LQPFLPCRTPKSCRASLPSPLG----WPWRW 426 L+P P R P+SCRAS PL PWR+ Sbjct: 62 LEPARPNRHPESCRASEDGPLNSRAISPWRY 92
>PA2X_BUNFA (P14411) Phospholipase A2 isozyme X, basic (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 118 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%) Frame = +3 Query: 228 CSCHDAVCITM---PYNLGNVAANKKGRCK 308 C C A I PYNL N NKK CK Sbjct: 89 CDCDRAAAICFAAAPYNLSNFGINKKTHCK 118
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Frame = -2 Query: 201 NGLRVV*LYSWWFFRSV-----LWLLILASSVYVLLSH 103 NG Y WWFF++V + LL++ + +YV SH Sbjct: 1176 NGSEFPQKYYWWFFQTVPGLTGVMLLLILAIMYVFASH 1213
>CCND2_ARATH (P42752) Cyclin delta-2| Length = 361 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -1 Query: 286 AATFPKLYGIVMHTASWQLQELNPFSHSEWF 194 A T ++ +V+ T +W+LQ L PFS ++F Sbjct: 178 AKTIKRMELLVVTTLNWRLQALTPFSFIDYF 208
>SYA_BUCBP (P59420) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 880 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -3 Query: 374 GVLQGRNGCNLPRFI 330 G + G NGCN+PRF+ Sbjct: 195 GTIPGNNGCNVPRFV 209
>NIRQ_PSEST (Q02441) Denitrification regulatory protein nirQ| Length = 275 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -3 Query: 371 VLQGRNGCNLPRFIIHLCCAILAPPFLVGCH 279 +++G GC RF+ H+ + P + V CH Sbjct: 44 LIKGPTGCGKTRFVQHMAHRLNLPLYTVACH 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,982,157 Number of Sequences: 219361 Number of extensions: 1548878 Number of successful extensions: 4074 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4073 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
