ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40b11 |
|---|---|
| Clone Library Name | barley_pub |
>YEIA_ECOLI (P25889) Hypothetical protein yeiA| Length = 411 Score = 39.7 bits (91), Expect = 0.004 Identities = 17/45 (37%), Positives = 29/45 (64%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 LLGA T+QV TG+M +GY +V+ + + L ++ F S+++ G Sbjct: 273 LLGAATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVG 317
>PYRDA_ENTFA (P59626) Dihydroorotate dehydrogenase A (EC 1.3.3.1)| (Dihydroorotate oxidase A) (DHOdehase A) (DHODase A) (DHOD A) Length = 311 Score = 36.2 bits (82), Expect = 0.040 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA VQV T + G + ++L ELQ+ M + SIE+FRG Sbjct: 262 LCGATLVQVGTQLHQEGPQVFERLAKELQEIMAAKGYESIEEFRG 306
>PYRD_METTH (O27281) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 303 Score = 34.7 bits (78), Expect = 0.12 Identities = 17/43 (39%), Positives = 24/43 (55%) Frame = -1 Query: 450 GADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 GA VQV T +M G + K+C L+ FM FSS+++ G Sbjct: 257 GARAVQVGTAIMYDGPEVFMKICRGLEAFMMAEGFSSVDEMVG 299
>PYRD_HALMA (Q5UYF1) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 350 Score = 33.9 bits (76), Expect = 0.20 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = -1 Query: 450 GADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGASL 313 GA VQ+ TG++ G + +++ + L+D + F S+ED GA L Sbjct: 305 GASLVQLYTGLVYRGPSIAREINSGLRDLLAEDGFDSVEDAVGADL 350
>PYRD_SACCA (Q6V3X0) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 33.5 bits (75), Expect = 0.26 Identities = 16/45 (35%), Positives = 28/45 (62%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA VQ+ T ++ G + ++L EL++ M +++IE+FRG Sbjct: 265 LCGASMVQIGTELVKEGVPIFERLERELKEVMDKKGYTTIEEFRG 309
>PYRD_METJA (Q58070) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 306 Score = 33.5 bits (75), Expect = 0.26 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMR 358 + GA VQ+ +GV GY + KK+C E+ F++ Sbjct: 259 MAGASAVQIGSGVYYRGYDIFKKVCDEIISFLK 291
>PYRD1_SACKL (Q7Z892) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 314 Score = 32.3 bits (72), Expect = 0.58 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA +QV T + G + +L EL++ M ++SIE FRG Sbjct: 265 LCGATMLQVGTELYKEGVSIFDRLERELKELMDKKGYTSIEQFRG 309
>PYRD_STRR6 (Q8DQG9) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 311 Score = 32.0 bits (71), Expect = 0.76 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA VQV T + G ++ EL+ M + S+EDFRG Sbjct: 261 LCGASMVQVGTTLHKEGVSAFDRITNELKAIMVEKGYESLEDFRG 305
>PYRD_STRPN (Q9X9S0) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 311 Score = 32.0 bits (71), Expect = 0.76 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA VQV T + G ++ EL+ M + S+EDFRG Sbjct: 261 LCGASMVQVGTTLHKEGVSAFDRITNELKAIMVEKGYESLEDFRG 305
>PYD1_KLULA (Q7Z895) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 315 Score = 31.6 bits (70), Expect = 0.99 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA +Q+ T + G + +++ EL + + SIEDFRG Sbjct: 265 LCGATMLQIGTELQNEGTEIFERINAELLQILEQKGYQSIEDFRG 309
>PYRD_PYRFU (Q8U0P6) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 300 Score = 31.2 bits (69), Expect = 1.3 Identities = 12/45 (26%), Positives = 26/45 (57%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRG 322 L GA VQ+ T V + G+ + +++ ++ ++ FSS+++ G Sbjct: 251 LAGASAVQIGTAVYLKGFSVFREIAEGIRKYLEEEGFSSVKEIIG 295
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 31.2 bits (69), Expect = 1.3 Identities = 11/45 (24%), Positives = 24/45 (53%) Frame = -1 Query: 450 GADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGAS 316 GA +QVC+ + + +++ CT L+ + + ++D+ G S Sbjct: 809 GASVLQVCSAIQNQDFTIIQDYCTGLKALLYLKSIEELQDWDGQS 853
>DPYD_CAEEL (Q18164) Probable dihydropyrimidine dehydrogenase [NADP+] (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1059 Score = 30.8 bits (68), Expect = 1.7 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGASLP 310 + GA +QVC+ V + +V CT L+ + + S++++ G S P Sbjct: 821 MAGASVLQVCSAVQNQDFTVVDDYCTGLKALLYLSGAESLKNWDGQSPP 869
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 30.8 bits (68), Expect = 1.7 Identities = 11/45 (24%), Positives = 24/45 (53%) Frame = -1 Query: 450 GADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGAS 316 GA +QVC+ + + +++ CT L+ + + ++D+ G S Sbjct: 809 GASVLQVCSAIQNQDFTVIEDYCTGLKALLYLKSIEELQDWDGQS 853
>PYRD_VIBVY (Q7MKX3) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 336 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTEL 373 L GAD VQV +G + HG GLV+ + L Sbjct: 309 LAGADLVQVYSGFIYHGPGLVRDIVKNL 336
>PYRD_VIBVU (Q8D9G5) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 336 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTEL 373 L GAD VQV +G + HG GLV+ + L Sbjct: 309 LAGADLVQVYSGFIYHGPGLVRDIVKNL 336
>PYRD_THEAC (Q9HL35) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 300 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = -1 Query: 456 LLGADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGASL 313 + GA VQ+ T + G + + + +++ FM F SI+D G ++ Sbjct: 252 MAGASAVQIGTALYTVGKSVFRNIISQMNTFMDDEKFHSIQDMVGVAI 299
>APPF_BACSU (P42065) Oligopeptide transport ATP-binding protein appF| Length = 329 Score = 29.3 bits (64), Expect = 4.9 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +1 Query: 37 LNEVQQRFP----LFVSKVRA*SQVEG-SMAERKGAARGIGSETGLRHSVGDHALRLLDE 201 L +V++ FP LF KV V+G S + +KG GI E+G S + L + Sbjct: 12 LRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMIRLYK 71 Query: 202 PVAGPVLVRLQ 234 P G +L + Q Sbjct: 72 PTEGQILFKGQ 82
>PYRD_CORDI (Q6NH79) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate| oxidase) (DHOdehase) (DHODase) (DHOD) Length = 363 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -1 Query: 450 GADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGASLPY 307 GA +Q TG++ G ++ + + +R HD SSI+ G+ LP+ Sbjct: 313 GATLLQGYTGMIYGGPDWIRDIHLGIAAQLRAHDLSSIDQAVGSKLPW 360
>PR28_MYCTU (P0A5Q6) Proline-rich 28 kDa antigen precursor| Length = 310 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -2 Query: 203 GSSRRRRAWSPTECRSPVSDPIPLAAPFLSAILP 102 GSS R +SP +P++ PIP+ AP +A+ P Sbjct: 63 GSSNR---FSPAPAPAPIASPIPVGAPGSTAVPP 93
>PR28_MYCBO (P0A5Q7) Proline-rich 28 kDa antigen precursor| Length = 310 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -2 Query: 203 GSSRRRRAWSPTECRSPVSDPIPLAAPFLSAILP 102 GSS R +SP +P++ PIP+ AP +A+ P Sbjct: 63 GSSNR---FSPAPAPAPIASPIPVGAPGSTAVPP 93
>KLDC3_RAT (Q6AYI2) Kelch domain-containing protein 3| Length = 382 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +2 Query: 98 WKEVWRKGRAPRGGSDRRQGCGIQLETMLSVSLTNPSPVQSLSD 229 WK++ KG+ P RRQ C I + ++ T+PSP + L D Sbjct: 278 WKKIEPKGKGPC--PRRRQCCCIVGDKIVLFGGTSPSPEEGLGD 319
>KLDC3_MOUSE (Q8VEM9) Kelch domain-containing protein 3 (Protein Peas) (Testis| intracellular mediator protein) Length = 382 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +2 Query: 98 WKEVWRKGRAPRGGSDRRQGCGIQLETMLSVSLTNPSPVQSLSD 229 WK++ KG+ P RRQ C I + ++ T+PSP + L D Sbjct: 278 WKKIEPKGKGPC--PRRRQCCCIVGDKIVLFGGTSPSPEEGLGD 319
>KLDC3_HUMAN (Q9BQ90) Kelch domain-containing protein 3 (Protein Peas) (Testis| intracellular mediator protein) Length = 382 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +2 Query: 98 WKEVWRKGRAPRGGSDRRQGCGIQLETMLSVSLTNPSPVQSLSD 229 WK++ KG+ P RRQ C I + ++ T+PSP + L D Sbjct: 278 WKKIEPKGKGPC--PRRRQCCCIVGDKIVLFGGTSPSPEEGLGD 319
>SUZ2_DROME (P25172) Protein suppressor 2 of zeste (Protein posterior sex| combs) Length = 1368 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -1 Query: 402 GLVKKLCTELQDFMRMHDFSSIEDFRGASLPYFTTHTDLVQRQKE 268 GL ++ C EL DF HD + D + P F T T+L+ E Sbjct: 102 GLYQRECKELADFKEQHD---LVDEQTTDEPEFFTTTELISLSLE 143
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/45 (24%), Positives = 23/45 (51%) Frame = -1 Query: 450 GADTVQVCTGVMMHGYGLVKKLCTELQDFMRMHDFSSIEDFRGAS 316 GA +QVC+ V + +++ CT L+ + + ++ + G S Sbjct: 809 GASVLQVCSAVQNQDFTVIQDYCTGLKALLYLKSIEELQGWDGQS 853 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,396,742 Number of Sequences: 219361 Number of extensions: 1122293 Number of successful extensions: 3765 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3695 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3764 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
