Clone Information

BLAST Search Result

Clone Name	rbart40b10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476056.1\| Oryza sativa (japonica cultivar-group), predic...	80	7e-12
2	gb\|AC087553.3\| Oryza sativa (japonica cultivar-group) chromosome...	80	7e-12
3	gb\|AC084817.5\| Oryza sativa (japonica cultivar-group) chromosome...	80	7e-12
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	80	7e-12
5	emb\|AL008732.1\|HS67M12 Human DNA sequence from clone RP1-67M12 o...	42	1.6
6	gb\|AC098613.2\| Homo sapiens chromosome 3 clone RP11-24F11, compl...	42	1.6
7	gb\|AC093333.7\| Homo sapiens chromosome 8, clone RP11-470N15, com...	42	1.6
8	gb\|AC104304.2\| Homo sapiens chromosome 3 clone RP11-509I21, comp...	42	1.6
9	gb\|AC023741.4\| Drosophila melanogaster X BAC RP98-23O9 (Roswell ...	42	1.6
10	gb\|AC104627.8\| Drosophila melanogaster X BAC RP98-4A11 (Roswell ...	42	1.6
11	gb\|AC162801.2\| Mus musculus BAC clone RP24-65E6 from chromosome ...	42	1.6
12	dbj\|AP008934.1\| Staphylococcus saprophyticus subsp. saprophyticu...	42	1.6
13	gb\|AC156798.2\| Mus musculus BAC clone RP23-378B3 from chromosome...	42	1.6
14	gb\|AC025522.7\| Homo sapiens chromosome 8, clone RP11-599P7, comp...	42	1.6
15	gb\|AF508798.1\| Homo sapiens lactoferrin gene, exons 1 through 6 ...	42	1.6
16	gb\|AE003490.3\| Drosophila melanogaster chromosome X, section 42 ...	42	1.6
17	emb\|AL833781.5\| Mouse DNA sequence from clone RP23-447J12 on chr...	42	1.6
18	ref\|NM_101556.3\| Arabidopsis thaliana unknown protein AT1G16950 ...	40	6.5
19	gb\|AC150752.4\| Bos taurus BAC CH240-288E20 (Children's Hospital...	40	6.5
20	gb\|AC147312.3\| Pan troglodytes BAC clone RP43-50K12 from 7, comp...	40	6.5
21	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	6.5
22	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	6.5
23	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	6.5
24	gb\|AC124412.3\| Mus musculus BAC clone RP24-274J3 from chromosome...	40	6.5
25	gb\|AC118613.8\| Mus musculus chromosome 6, clone RP23-442E2, comp...	40	6.5
26	gb\|AC006148.3\| Homo sapiens PAC clone RP5-902E20 from 7, complet...	40	6.5
27	emb\|AL606489.26\| Human DNA sequence from clone RP11-739N20 on ch...	40	6.5
28	emb\|AL161742.7\| Human DNA sequence from clone RP4-597J3 on chrom...	40	6.5
29	gb\|AC090786.6\| Homo sapiens chromosome 8, clone RP11-381G11, com...	40	6.5
30	emb\|BX927155.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	6.5
31	emb\|AL161508.2\|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ...	40	6.5
32	emb\|AL513014.9\| Mouse DNA sequence from clone RP23-461O24 on chr...	40	6.5
33	emb\|BX537117.6\| Zebrafish DNA sequence from clone CH211-281N15 i...	40	6.5
34	gb\|AC161479.5\| Pan troglodytes BAC clone CH251-168J1 from chromo...	40	6.5
35	dbj\|AP001204.1\| Rhodococcus equi plasmid pREAT701 DNA, complete ...	40	6.5
36	gb\|AC112640.3\| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Canc...	40	6.5
37	dbj\|AK134538.1\| Mus musculus adult male medulla oblongata cDNA, ...	40	6.5
38	gb\|AC092661.2\| Homo sapiens BAC clone RP11-510D4 from 4, complet...	40	6.5
39	gb\|AC093926.6\| Genomic sequence for Mus musculus, clone RP23-342...	40	6.5
40	dbj\|AK163880.1\| Mus musculus 0 day neonate cerebellum cDNA, RIKE...	40	6.5
41	gb\|AC161147.6\| Mus musculus BAC clone RP23-357G12 from chromosom...	40	6.5
42	emb\|BX005229.30\| Zebrafish DNA sequence from clone DKEY-21D17 in...	40	6.5
43	dbj\|AK039271.1\| Mus musculus adult male spinal cord cDNA, RIKEN ...	40	6.5
44	dbj\|AK031928.1\| Mus musculus adult male medulla oblongata cDNA, ...	40	6.5
45	dbj\|AK076827.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	6.5
46	gb\|AC022872.4\|AC022872 Homo sapiens chromosome 15, clone RP11-39...	40	6.5
47	gb\|AF355462.1\|AF355462 Micrococcus lylae MlyIM (mlyIM) and MlyIR...	40	6.5
48	gb\|AC079412.5\| Homo sapiens chromosome 16 clone CTD-2302M15, com...	40	6.5
49	gb\|AF116907.2\|AF116907 Rhodococcus equi virulence plasmid, compl...	40	6.5
50	gb\|AC154245.2\| Mus musculus BAC clone RP24-326A24 from chromosom...	40	6.5
51	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	6.5
52	gb\|AC048380.12\| Homo sapiens chromosome 18, clone RP11-426J5, co...	40	6.5
53	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.5
54	gb\|AC026237.4\|AC026237 Arabidopsis thaliana chromosome I BAC F17...	40	6.5
55	gb\|AC051629.3\|AC051629 Arabidopsis thaliana chromosome I BAC F6I...	40	6.5
56	emb\|CR450733.7\| Zebrafish DNA sequence from clone DKEYP-86E4 in ...	40	6.5
57	emb\|BX927356.22\| Zebrafish DNA sequence from clone DKEY-54K20 in...	40	6.5
58	gb\|AF128395.1\|F5K24 Arabidopsis thaliana BAC F5K24	40	6.5
59	gb\|AC006268.1\|AC006268 Arabidopsis thaliana BAC T24G23 from chro...	40	6.5
60	dbj\|AK122269.1\| Mus musculus mRNA for mKIAA0386 protein	40	6.5
61	gb\|CP000102.1\| Methanosphaera stadtmanae DSM 3091, complete genome	40	6.5
62	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	6.5
63	gb\|AF017435.1\|AF017435 Methylobacterium extorquens methanol oxid...	40	6.5
64	emb\|AJ539424.1\|BPR539424 Beta vulgaris transgenic Beetle1 retrot...	40	6.5

>ref|XM_476056.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3354

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 422  ccctccagttgctccacatcctgagcattatgtacagcag 461
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3112 ccctccagttgctccacatcctgagcattatgtacagcag 3073



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 331  accttccagtacttcccgtccccggcgcagcacttgcc 368
            |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 3212 accttccagtacttgccgtcgccggcgcaccacttgcc 3175



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 276  cgacgccgagctgtacttctc 296
            |||||||||||||||||||||
Sbjct: 3267 cgacgccgagctgtacttctc 3247

to top

>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                     
Query: 422   ccctccagttgctccacatcctgagcattatgtacagcag 461
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 43712 ccctccagttgctccacatcctgagcattatgtacagcag 43673



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 331   accttccagtacttcccgtccccggcgcagcacttgcc 368
             |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 43812 accttccagtacttgccgtcgccggcgcaccacttgcc 43775



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   cgacgccgagctgtacttctc 296
             |||||||||||||||||||||
Sbjct: 43867 cgacgccgagctgtacttctc 43847

to top

>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
              complete sequence
          Length = 136713

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                      
Query: 422    ccctccagttgctccacatcctgagcattatgtacagcag 461
              ||||||||||||||||||||||||||||||||||||||||
Sbjct: 131927 ccctccagttgctccacatcctgagcattatgtacagcag 131888



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 331    accttccagtacttcccgtccccggcgcagcacttgcc 368
              |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 132027 accttccagtacttgccgtcgccggcgcaccacttgcc 131990



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 276    cgacgccgagctgtacttctc 296
              |||||||||||||||||||||
Sbjct: 132082 cgacgccgagctgtacttctc 132062

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                       
Query: 422     ccctccagttgctccacatcctgagcattatgtacagcag 461
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157233 ccctccagttgctccacatcctgagcattatgtacagcag 4157194



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 331     accttccagtacttcccgtccccggcgcagcacttgcc 368
               |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 4157333 accttccagtacttgccgtcgccggcgcaccacttgcc 4157296



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 276     cgacgccgagctgtacttctc 296
               |||||||||||||||||||||
Sbjct: 4157388 cgacgccgagctgtacttctc 4157368

to top

>emb|AL008732.1|HS67M12 Human DNA sequence from clone RP1-67M12 on chromosome 6p22.1-22.3
             Contains part of a novel gene, complete sequence
          Length = 103268

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   tccagttgctccacatcctga 445
             |||||||||||||||||||||
Sbjct: 53759 tccagttgctccacatcctga 53779

to top

>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    acagccacccatacacaaaca 179
              |||||||||||||||||||||
Sbjct: 125559 acagccacccatacacaaaca 125539

to top

>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 425    tccagttgctccacatcctga 445
              |||||||||||||||||||||
Sbjct: 145465 tccagttgctccacatcctga 145445

to top

>gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, complete sequence
          Length = 202933

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  acagccacccatacacaaaca 179
            |||||||||||||||||||||
Sbjct: 1416 acagccacccatacacaaaca 1396

to top

>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tagagaaacgagaacaaaagg 122
             |||||||||||||||||||||
Sbjct: 77324 tagagaaacgagaacaaaagg 77344

to top

>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187921

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tagagaaacgagaacaaaagg 122
             |||||||||||||||||||||
Sbjct: 12518 tagagaaacgagaacaaaagg 12538

to top

>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   cacccatacacaaacattttt 184
             |||||||||||||||||||||
Sbjct: 13462 cacccatacacaaacattttt 13442

to top

>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 53     ataattaaaaacagctttagc 73
              |||||||||||||||||||||
Sbjct: 435955 ataattaaaaacagctttagc 435935

to top

>gb|AC156798.2| Mus musculus BAC clone RP23-378B3 from chromosome 12, complete sequence
          Length = 220547

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 164   cacccatacacaaacattttt 184
             |||||||||||||||||||||
Sbjct: 16245 cacccatacacaaacattttt 16265

to top

>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 425    tccagttgctccacatcctga 445
              |||||||||||||||||||||
Sbjct: 124938 tccagttgctccacatcctga 124958

to top

>gb|AF508798.1| Homo sapiens lactoferrin gene, exons 1 through 6 and partial cds
          Length = 19899

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 159  acagccacccatacacaaaca 179
            |||||||||||||||||||||
Sbjct: 5171 acagccacccatacacaaaca 5191

to top

>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
             sequence
          Length = 302665

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tagagaaacgagaacaaaagg 122
             |||||||||||||||||||||
Sbjct: 94445 tagagaaacgagaacaaaagg 94465

to top

>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete
             sequence
          Length = 165700

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    agatgaagaacacaccaacaa 97
             |||||||||||||||||||||
Sbjct: 24159 agatgaagaacacaccaacaa 24139

to top

>ref|NM_101556.3| Arabidopsis thaliana unknown protein AT1G16950 mRNA, complete cds
          Length = 551

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 168 catacacaaacatttttgagaaga 191
           |||||||||||||| |||||||||
Sbjct: 469 catacacaaacattcttgagaaga 446

to top

>gb|AC150752.4| Bos taurus  BAC CH240-288E20 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 165924

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 425    tccagttgctccacatcctgagca 448
              ||||||||||||||||||| ||||
Sbjct: 132094 tccagttgctccacatcctcagca 132071

to top

>gb|AC147312.3| Pan troglodytes BAC clone RP43-50K12 from 7, complete sequence
          Length = 214157

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tcatttaatcatctgaagaa 22
             ||||||||||||||||||||
Sbjct: 80525 tcatttaatcatctgaagaa 80544

to top

>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     acgccgagctgtacttctcc 297
               ||||||||||||||||||||
Sbjct: 1697490 acgccgagctgtacttctcc 1697509

to top

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     acgccgagctgtacttctcc 297
               ||||||||||||||||||||
Sbjct: 1527150 acgccgagctgtacttctcc 1527169

to top

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 278     acgccgagctgtacttctcc 297
               ||||||||||||||||||||
Sbjct: 4391754 acgccgagctgtacttctcc 4391735

to top

>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence
          Length = 175945

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tttttgagaagaaaccacag 199
              ||||||||||||||||||||
Sbjct: 168367 tttttgagaagaaaccacag 168386

to top

>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence
          Length = 256556

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    gagaaacgagaacaaaaggc 123
              ||||||||||||||||||||
Sbjct: 111410 gagaaacgagaacaaaaggc 111429

to top

>gb|AC006148.3| Homo sapiens PAC clone RP5-902E20 from 7, complete sequence
          Length = 121110

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tcatttaatcatctgaagaa 22
             ||||||||||||||||||||
Sbjct: 13820 tcatttaatcatctgaagaa 13801

to top

>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the
             5' end of the gene for phosphoinositol 3-phosphate-binding
             protein-3 (PEPP3), two novel genes, the  PPP1R15B gene for
             protein phosphatase 1, regulatory (inhibitor) subunit 15B,
             the PIK3C2B gene for phosphoinositide-3-kinase, class 2,
             beta polypeptide, a small nuclear ribonucleoprotein
             polypeptide F (SNRPF) pseudogene and three CpG islands,
             complete sequence
          Length = 167079

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   ctccagttgctccacatcct 443
             ||||||||||||||||||||
Sbjct: 47636 ctccagttgctccacatcct 47617

to top

>emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chromosome 1p32.1-32.3
             Contains the 5' end of the ROR1 gene for receptor tyrosine
             kinase-like orphan receptor 1, a ribosomal protein L19
             (RPL19) pseudogene, a cofilin 1 (non-muscle) (CFL1)
             pseudogene and a CpG island, complete sequence
          Length = 114409

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tccagttgctccacatcctg 444
             ||||||||||||||||||||
Sbjct: 19295 tccagttgctccacatcctg 19314

to top

>gb|AC090786.6| Homo sapiens chromosome 8, clone RP11-381G11, complete sequence
          Length = 188274

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    ctccagttgctccacatcct 443
              ||||||||||||||||||||
Sbjct: 180689 ctccagttgctccacatcct 180670

to top

>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    cttccagtacttcccgtccc 352
              ||||||||||||||||||||
Sbjct: 133877 cttccagtacttcccgtccc 133858

to top

>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
          Length = 196517

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agatgaagaacacaccaaca 96
             ||||||||||||||||||||
Sbjct: 42898 agatgaagaacacaccaaca 42917



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agatgaagaacacaccaaca 96
             ||||||||||||||||||||
Sbjct: 10687 agatgaagaacacaccaaca 10706

to top

>emb|AL513014.9| Mouse DNA sequence from clone RP23-461O24 on chromosome 13 Contains the
             5' end of the gene for a novel protein similar to C6orf32
             (KIAA0386, DIFF48), complete sequence
          Length = 80460

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   tgccgtgcacctccggctcc 393
             ||||||||||||||||||||
Sbjct: 11955 tgccgtgcacctccggctcc 11936

to top

>emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 in linkage group 17,
             complete sequence
          Length = 161999

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    tgataattaaaaacagcttt 70
             ||||||||||||||||||||
Sbjct: 33397 tgataattaaaaacagcttt 33416

to top

>gb|AC161479.5| Pan troglodytes BAC clone CH251-168J1 from chromosome unknown, complete
              sequence
          Length = 206985

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     caaaatttagagaaacgagaacaa 118
              ||||||||||||||| ||||||||
Sbjct: 206684 caaaatttagagaaaagagaacaa 206661

to top

>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence
          Length = 80610

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   acgctgctctccgacgccga 284
             ||||||||||||||||||||
Sbjct: 54339 acgctgctctccgacgccga 54320

to top

>gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 211335

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    tccagttgctccacatcctg 444
              ||||||||||||||||||||
Sbjct: 205754 tccagttgctccacatcctg 205773

to top

>dbj|AK134538.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330405L09 product:neurotrophic
           tyrosine kinase, receptor, type 2, full insert sequence
          Length = 5528

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 tgccgtgcacctccggctcc 393
           ||||||||||||||||||||
Sbjct: 138 tgccgtgcacctccggctcc 119

to top

>gb|AC092661.2| Homo sapiens BAC clone RP11-510D4 from 4, complete sequence
          Length = 176026

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     caaaatttagagaaacgagaacaa 118
              ||||||||||||||| ||||||||
Sbjct: 171539 caaaatttagagaaaagagaacaa 171516

to top

>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence
          Length = 210913

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tttttgagaagaaaccacag 199
             ||||||||||||||||||||
Sbjct: 59070 tttttgagaagaaaccacag 59089

to top

>dbj|AK163880.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230006N14 product:Diff48
           protein homolog [Homo sapiens], full insert sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 tgccgtgcacctccggctcc 393
           ||||||||||||||||||||
Sbjct: 143 tgccgtgcacctccggctcc 124

to top

>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence
          Length = 225957

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   gagaaacgagaacaaaaggc 123
             ||||||||||||||||||||
Sbjct: 37175 gagaaacgagaacaaaaggc 37156

to top

>emb|BX005229.30| Zebrafish DNA sequence from clone DKEY-21D17 in linkage group 17,
             complete sequence
          Length = 94988

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aaaaacagctttagcattag 78
             ||||||||||||||||||||
Sbjct: 57887 aaaaacagctttagcattag 57906

to top

>dbj|AK039271.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330012A19 product:hypothetical
           protein, full insert sequence
          Length = 2550

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 tgccgtgcacctccggctcc 393
           ||||||||||||||||||||
Sbjct: 172 tgccgtgcacctccggctcc 153

to top

>dbj|AK031928.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330500D04 product:DJ245M18.1
           (PLACENTAL PROTEIN DIFF40) (FRAGMENT) homolog [Homo
           sapiens], full insert sequence
          Length = 3370

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 tgccgtgcacctccggctcc 393
           ||||||||||||||||||||
Sbjct: 160 tgccgtgcacctccggctcc 141

to top

>dbj|AK076827.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930502C15 product:homeodomain
           interacting protein kinase 2, full insert sequence
          Length = 875

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 gagaaacgagaacaaaaggc 123
           ||||||||||||||||||||
Sbjct: 106 gagaaacgagaacaaaaggc 125

to top

>gb|AC022872.4|AC022872 Homo sapiens chromosome 15, clone RP11-390D11, complete sequence
          Length = 181923

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    ctccagttgctccacatcct 443
              ||||||||||||||||||||
Sbjct: 118417 ctccagttgctccacatcct 118398

to top

>gb|AF355462.1|AF355462 Micrococcus lylae MlyIM (mlyIM) and MlyIR (mlyIR) genes, complete cds
          Length = 2471

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   aaaatttagagaaacgagaa 115
            ||||||||||||||||||||
Sbjct: 1319 aaaatttagagaaacgagaa 1338

to top

>gb|AC079412.5| Homo sapiens chromosome 16 clone CTD-2302M15, complete sequence
          Length = 104704

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tccagttgctccacatcctg 444
             ||||||||||||||||||||
Sbjct: 42939 tccagttgctccacatcctg 42958

to top

>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence
          Length = 80609

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   acgctgctctccgacgccga 284
             ||||||||||||||||||||
Sbjct: 54338 acgctgctctccgacgccga 54319

to top

>gb|AC154245.2| Mus musculus BAC clone RP24-326A24 from chromosome 14, complete
             sequence
          Length = 185892

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    ataattaaaaacagctttagcatt 76
             ||||||||||||||| ||||||||
Sbjct: 92367 ataattaaaaacagcattagcatt 92344

to top

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 333     cttccagtacttcccgtccc 352
               ||||||||||||||||||||
Sbjct: 2606703 cttccagtacttcccgtccc 2606684

to top

>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   ctccagttgctccacatcct 443
             ||||||||||||||||||||
Sbjct: 79449 ctccagttgctccacatcct 79430

to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 278     acgccgagctgtacttctcc 297
               ||||||||||||||||||||
Sbjct: 4111372 acgccgagctgtacttctcc 4111353

to top

>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence,
            complete sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 168  catacacaaacatttttgagaaga 191
            |||||||||||||| |||||||||
Sbjct: 4459 catacacaaacattcttgagaaga 4482

to top

>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   catacacaaacatttttgagaaga 191
             |||||||||||||| |||||||||
Sbjct: 51156 catacacaaacattcttgagaaga 51179

to top

>emb|CR450733.7| Zebrafish DNA sequence from clone DKEYP-86E4 in linkage group 18,
             complete sequence
          Length = 208614

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tgataattaaaaacagcttt 70
             ||||||||||||||||||||
Sbjct: 62196 tgataattaaaaacagcttt 62177

to top

>emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in linkage group 17,
              complete sequence
          Length = 204195

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aaaaacagctttagcattag 78
              ||||||||||||||||||||
Sbjct: 163019 aaaaacagctttagcattag 163038

to top

>gb|AF128395.1|F5K24 Arabidopsis thaliana BAC F5K24
          Length = 109786

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     agatgaagaacacaccaaca 96
              ||||||||||||||||||||
Sbjct: 100805 agatgaagaacacaccaaca 100824



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agatgaagaacacaccaaca 96
             ||||||||||||||||||||
Sbjct: 68597 agatgaagaacacaccaaca 68616

to top

>gb|AC006268.1|AC006268 Arabidopsis thaliana BAC T24G23 from chromosome IV near 21 cM, complete
             sequence
          Length = 105420

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    agatgaagaacacaccaaca 96
             ||||||||||||||||||||
Sbjct: 19537 agatgaagaacacaccaaca 19556

to top

>dbj|AK122269.1| Mus musculus mRNA for mKIAA0386 protein
          Length = 5528

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 tgccgtgcacctccggctcc 393
           ||||||||||||||||||||
Sbjct: 139 tgccgtgcacctccggctcc 120

to top

>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      aaacagctttagcattagat 80
               ||||||||||||||||||||
Sbjct: 1492861 aaacagctttagcattagat 1492842

to top

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 380     gcacctccggctcctcgccgtccg 403
               |||||||| |||||||||||||||
Sbjct: 1474348 gcacctccagctcctcgccgtccg 1474371

to top

>gb|AF017435.1|AF017435 Methylobacterium extorquens methanol oxidation genes, glmU-like gene,
            partial cds, and orfL2, orfL1, orfR genes, complete cds
          Length = 4301

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 375  gccgtgcacctccggctcct 394
            ||||||||||||||||||||
Sbjct: 2197 gccgtgcacctccggctcct 2216

to top

>emb|AJ539424.1|BPR539424 Beta vulgaris transgenic Beetle1 retrotransposon
          Length = 6736

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   tcatctgaagaaggttttcc 30
            ||||||||||||||||||||
Sbjct: 3638 tcatctgaagaaggttttcc 3657


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,624,126
Number of Sequences: 3902068
Number of extensions: 4624126
Number of successful extensions: 101023
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100642
Number of HSP's gapped (non-prelim): 381
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result