ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart40b09 |
|---|---|
| Clone Library Name | barley_pub |
>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 2452 Score = 42.0 bits (97), Expect = 8e-04 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCIS--YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETP 262 T N++N S T + + ++ Y+ ++P Y + +P+YS P+YS + Y +P Sbjct: 2257 TYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSP 2316 Query: 263 RXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 + Y P+Y + Y +P ++ +P++ Sbjct: 2317 KYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNY 2361 Score = 36.6 bits (83), Expect = 0.034 Identities = 18/72 (25%), Positives = 31/72 (43%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P+YS P+YS + Y +P Y + P++ Sbjct: 2318 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP---VAQNIASPNYSPYSITSPKFSPT 2374 Query: 341 ATSYGIVAPGYD 376 + +Y I +P YD Sbjct: 2375 SPAYSISSPVYD 2386
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Frame = +2 Query: 116 SVTEDGHST----YKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXX 283 S + G+ST S SY +P Y +P YS P YS + Y +P Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618 Query: 284 XXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +PS+ Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1655 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1665 TSPSYSPTSPSY-SPTSPSY 1683 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1651 TSPSYSPTSPSY-SPTSPSY 1669 Score = 41.2 bits (95), Expect = 0.001 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1644 TSPSYSPTSPSY-SPTSPSY 1662 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1728 TSPSYSPTSPSY-SPTSPSY 1746 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1721 TSPSYSPTSPSY-SPTSPSY 1739 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1714 TSPSYSPTSPSY-SPTSPSY 1732 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1707 TSPSYSPTSPSY-SPTSPSY 1725 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1700 TSPSYSPTSPSY-SPTSPSY 1718 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1693 TSPSYSPTSPSY-SPTSPSY 1711 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1686 TSPSYSPTSPSY-SPTSPSY 1704 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1679 TSPSYSPTSPSY-SPTSPSY 1697 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/79 (29%), Positives = 30/79 (37%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734 Query: 338 VATSYGIVAPGYDSVVAPS 394 + SY +P Y S +PS Sbjct: 1735 TSPSYSPTSPSY-SPTSPS 1752 Score = 37.0 bits (84), Expect = 0.026 Identities = 24/87 (27%), Positives = 35/87 (40%) Frame = +2 Query: 137 STYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDM 316 S YK S + +P ++P Y + P YS + GY +P SY Sbjct: 1529 SPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSP 1587 Query: 317 FVPRYDMVATSYGIVAPGYDSVVAPSH 397 P Y + SY +P Y S +PS+ Sbjct: 1588 TSPSYSPTSPSYSPTSPSY-SATSPSY 1613
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/72 (29%), Positives = 27/72 (37%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1698 Query: 338 VATSYGIVAPGY 373 + SY +PGY Sbjct: 1699 TSPSYSPTSPGY 1710 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1685 TSPSYSPTSPNY-SPTSPSY 1703 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1604 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1663 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1664 TSPSYSPTSPSY-SPTSPSY 1682 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1650 TSPSYSPTSPAY-SPTSPSY 1668 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1636 TSPSYSPTSPSY-SPTSPSY 1654 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1569 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1629 TSPSYSPTSPSY-SPTSPSY 1647 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1562 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1622 TSPSYSPTSPSY-SPTSPSY 1640 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP 1677 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1678 TSPSYSPTSPSY-SPTSPNY 1696 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1643 TSPSYSPTSPSY-SPTSPAY 1661 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1555 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1614 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1615 TSPSYSPTSPSY-SPTSPSY 1633 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1608 TSPSYSPTSPSY-SPTSPSY 1626 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1605 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1606 SPTSPSY-SPTSPSY 1619 Score = 35.8 bits (81), Expect = 0.058 Identities = 20/75 (26%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P + +P YS P YS + Y +P SY P Y + SY Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1599 SPTSPSY-SPTSPSY 1612 Score = 33.9 bits (76), Expect = 0.22 Identities = 19/75 (25%), Positives = 30/75 (40%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P + + +P +S P YS + Y +P SY P Y + SY Sbjct: 1532 SPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1591 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1592 SPTSPSY-SPTSPSY 1605 Score = 30.4 bits (67), Expect = 2.4 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETP 262 SY +P Y +P YS P YS + GY +P Sbjct: 1681 SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSP 1715 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/72 (23%), Positives = 25/72 (34%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1660 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--------------NYSPTSPSYSP 1705 Query: 338 VATSYGIVAPGY 373 + Y +P Y Sbjct: 1706 TSPGYSPGSPAY 1717
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 41.6 bits (96), Expect = 0.001 Identities = 23/80 (28%), Positives = 32/80 (40%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1635 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +PGY S +PS+ Sbjct: 1695 TSPAYSPTSPGY-SPTSPSY 1713 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1673 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1674 TSPSYSPTSPSY-SPTSPSY 1692 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/79 (29%), Positives = 31/79 (39%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P Y +P YS P YS + GY +P SY P Y Sbjct: 1559 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1618 Query: 341 ATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1619 SPSYSPTSPSY-SPTSPSY 1636 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1681 TSPSYSPTSPSY-SPTSPAY 1699 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1666 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1667 TSPSYSPTSPSY-SPTSPSY 1685 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1659 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1660 TSPSYSPTSPSY-SPTSPSY 1678 Score = 39.3 bits (90), Expect = 0.005 Identities = 27/103 (26%), Positives = 39/103 (37%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +P SD + S + S Y +P Y +P YS P YS + GY +P Sbjct: 1521 SPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1580 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 +Y P Y + SY +P Y S +PS+ Sbjct: 1581 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1622 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/73 (26%), Positives = 27/73 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y +P Y P Y Sbjct: 1656 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1715 Query: 338 VATSYGIVAPGYD 376 + SYG +P Y+ Sbjct: 1716 TSPSYGPTSPSYN 1728 Score = 38.9 bits (89), Expect = 0.007 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Frame = +2 Query: 116 SVTEDGHS----TYK-SCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXX 280 S T G+S TY S Y +P Y +P YS P YS + Y +P Sbjct: 1567 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1626 Query: 281 XXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + +Y +P Y S +PS+ Sbjct: 1627 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY-SPTSPSY 1664 Score = 36.2 bits (82), Expect = 0.044 Identities = 18/72 (25%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1649 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1708 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1709 TSPSYSPTSPSY 1720 Score = 35.8 bits (81), Expect = 0.058 Identities = 25/104 (24%), Positives = 34/104 (32%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGP 1722 Query: 338 VATSYGIVAPGYDSVVAPSHIXXXXXXXXXXXPRNNIGAPRSDS 469 + SY + Y +A S P + +P S S Sbjct: 1723 TSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPS 1766
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (Fragment) Length = 902 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/100 (26%), Positives = 40/100 (40%) Frame = +2 Query: 98 SDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXX 277 S + ++S + + +Y S Y +P Y +P YS P YS + Y +P Sbjct: 700 SPSAMNSPGYNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 759 Query: 278 XXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +PS+ Sbjct: 760 SPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSY-SPTSPSY 798 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 783 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 843 TSPSYSPTSPSY-SPTSPSY 861 Score = 40.0 bits (92), Expect = 0.003 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 734 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSP 793 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 794 TSPSYSPTSPSY-SPTSPSY 812 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 790 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 849 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 850 TSPSYSPTSPSY-SPSSPSY 868 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 769 SYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 828 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 829 TSPSYSPTSPSY-SPTSPSY 847 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 762 SYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 821 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 822 TSPSYSPTSPSY-SPTSPSY 840 Score = 39.7 bits (91), Expect = 0.004 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 755 SYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 814 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 815 TSPSYSPTSPSY-SPTSPSY 833 Score = 39.3 bits (90), Expect = 0.005 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 748 SYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 807 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 808 TSPSYSPTSPSY-SPTSPSY 826 Score = 38.1 bits (87), Expect = 0.012 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 804 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 863 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 864 SSPSYSPSSPSY-SPSSPSY 882 Score = 35.0 bits (79), Expect = 0.099 Identities = 19/72 (26%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 818 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 877 Query: 338 VATSYGIVAPGY 373 + SY +P + Sbjct: 878 SSPSYSPSSPTF 889
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/103 (26%), Positives = 38/103 (36%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + SY +P Y +P YS P YS + Y +P Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +PS+ Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1734 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1688 TSPSYSPTSPSY-SPTSPSY 1706 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1681 TSPSYSPTSPSY-SPTSPSY 1699 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1674 TSPSYSPTSPSY-SPTSPSY 1692 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/104 (23%), Positives = 41/104 (39%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 ++P+ T S S Y +P+Y +P+YS P+YS + Y TP+ Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 1887 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 Y P+Y + +Y +P Y S +P++ Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTY 1930 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1779 TSPNYSPTSPSY-SPTSPSY 1797 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1737 TSPSYSPTSPNY-SPTSPNY 1755 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1730 TSPSYSPTSPSY-SPTSPNY 1748 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1751 TSPNYTPTSPSY-SPTSPSY 1769 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1772 TSPNYTPTSPNY-SPTSPSY 1790 Score = 38.1 bits (87), Expect = 0.012 Identities = 23/95 (24%), Positives = 33/95 (34%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + +Y +P Y +P YS P YS + Y +PR Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 SY P Y + Y +P Y Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1758 TSPSYSPTSPSY-SPTSPNY 1776 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/96 (21%), Positives = 37/96 (38%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 ++P + + T S S SY +P+Y +P YS P Y+ + Y +P+ Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK 1866 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 +Y P+Y + +Y +P Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1672 SPTSPSY-SPTSPSY 1685 Score = 37.0 bits (84), Expect = 0.026 Identities = 25/103 (24%), Positives = 38/103 (36%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN + T S + SY +P Y +P YS P YS + Y +P Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 +Y P Y + SY +P Y + +PS+ Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSY 1846 Score = 37.0 bits (84), Expect = 0.026 Identities = 19/72 (26%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P Y+ P YS + Y +P SY P Y Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1800 TSPSYSPSSPRY 1811 Score = 37.0 bits (84), Expect = 0.026 Identities = 18/72 (25%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P Y+ + Y +P +Y P Y Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1793 TSPSYSPTSPSY 1804 Score = 35.8 bits (81), Expect = 0.058 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y ++P SY P+Y Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1842 TSPSYSPSSPEY 1853 Score = 35.8 bits (81), Expect = 0.058 Identities = 24/103 (23%), Positives = 39/103 (37%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + SY +PRY +P Y+ P YS + Y +P+ Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 Y P+Y + Y +P Y S +P++ Sbjct: 1840 TPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY-SPTSPTY 1881 Score = 34.3 bits (77), Expect = 0.17 Identities = 20/72 (27%), Positives = 27/72 (37%) Frame = +2 Query: 182 YDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIV 361 Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667 Query: 362 APGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1668 SPSY-SPTSPSY 1678 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/69 (23%), Positives = 27/69 (39%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P YS P+YS + Y +P +Y P+Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926 Query: 341 ATSYGIVAP 367 + +Y +P Sbjct: 1927 SPTYSPTSP 1935 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P Y P+YS P YS + Y +P+ Y P Y Sbjct: 1874 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 1933 Query: 341 A---TSYGIVAPGYDSVVAPSH 397 + ++Y +PGY S +P++ Sbjct: 1934 SPKGSTYSPTSPGY-SPTSPTY 1954 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/69 (23%), Positives = 28/69 (40%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P YS P+YS + Y +P+ +Y P Y Sbjct: 1902 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK-----------GSTYSPTSPGYSPT 1950 Query: 341 ATSYGIVAP 367 + +Y + +P Sbjct: 1951 SPTYSLTSP 1959 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Frame = +2 Query: 191 VAPRYSVVGPRYSIVA-SGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAP 367 ++P YS P Y + GY ++P SY P Y + SY +P Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648 Query: 368 GYDSVVAPSH 397 Y S +PS+ Sbjct: 1649 SY-SPTSPSY 1657
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/103 (26%), Positives = 38/103 (36%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + SY +P Y +P YS P YS + Y +P Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +PS+ Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1734 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1688 TSPSYSPTSPSY-SPTSPSY 1706 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1681 TSPSYSPTSPSY-SPTSPSY 1699 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1674 TSPSYSPTSPSY-SPTSPSY 1692 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/104 (23%), Positives = 41/104 (39%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 ++P+ T S S Y +P+Y +P+YS P+YS + Y TP+ Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 1887 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 Y P+Y + +Y +P Y S +P++ Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTY 1930 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1779 TSPNYSPTSPSY-SPTSPSY 1797 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1737 TSPSYSPTSPNY-SPTSPNY 1755 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1730 TSPSYSPTSPSY-SPTSPNY 1748 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1751 TSPNYTPTSPSY-SPTSPSY 1769 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1772 TSPNYTPTSPNY-SPTSPSY 1790 Score = 38.1 bits (87), Expect = 0.012 Identities = 23/95 (24%), Positives = 33/95 (34%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + +Y +P Y +P YS P YS + Y +PR Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 SY P Y + Y +P Y Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1758 TSPSYSPTSPSY-SPTSPNY 1776 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/96 (21%), Positives = 37/96 (38%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 ++P + + T S S SY +P+Y +P YS P Y+ + Y +P+ Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 1866 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 +Y P+Y + +Y +P Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1672 SPTSPSY-SPTSPSY 1685 Score = 37.0 bits (84), Expect = 0.026 Identities = 25/103 (24%), Positives = 38/103 (36%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN + T S + SY +P Y +P YS P YS + Y +P Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 +Y P Y + SY +P Y + +PS+ Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSY 1846 Score = 37.0 bits (84), Expect = 0.026 Identities = 19/72 (26%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P Y+ P YS + Y +P SY P Y Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1800 TSPSYSPSSPRY 1811 Score = 37.0 bits (84), Expect = 0.026 Identities = 18/72 (25%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P Y+ + Y +P +Y P Y Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1793 TSPSYSPTSPSY 1804 Score = 35.8 bits (81), Expect = 0.058 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y ++P SY P+Y Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 1842 TSPSYSPSSPEY 1853 Score = 35.8 bits (81), Expect = 0.058 Identities = 24/103 (23%), Positives = 39/103 (37%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + SY +PRY +P Y+ P YS + Y +P+ Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 Y P+Y + Y +P Y S +P++ Sbjct: 1840 TPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY-SPTSPTY 1881 Score = 34.3 bits (77), Expect = 0.17 Identities = 20/72 (27%), Positives = 27/72 (37%) Frame = +2 Query: 182 YDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIV 361 Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1608 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1667 Query: 362 APGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1668 SPSY-SPTSPSY 1678 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/69 (23%), Positives = 27/69 (39%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P YS P+YS + Y +P +Y P+Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926 Query: 341 ATSYGIVAP 367 + +Y +P Sbjct: 1927 SPTYSPTSP 1935 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P Y P+YS P YS + Y +P+ Y P Y Sbjct: 1874 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 1933 Query: 341 A---TSYGIVAPGYDSVVAPSH 397 + ++Y +PGY S +P++ Sbjct: 1934 SPKGSTYSPTSPGY-SPTSPTY 1954 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/69 (23%), Positives = 28/69 (40%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P YS P+YS + Y +P+ +Y P Y Sbjct: 1902 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK-----------GSTYSPTSPGYSPT 1950 Query: 341 ATSYGIVAP 367 + +Y + +P Sbjct: 1951 SPTYSLTSP 1959 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Frame = +2 Query: 191 VAPRYSVVGPRYSIVA-SGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAP 367 ++P YS P Y + GY ++P SY P Y + SY +P Sbjct: 1589 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 1648 Query: 368 GYDSVVAPSH 397 Y S +PS+ Sbjct: 1649 SY-SPTSPSY 1657
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 41.2 bits (95), Expect = 0.001 Identities = 27/103 (26%), Positives = 38/103 (36%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + SY +P Y +P YS P YS + Y +P Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 189 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +PS+ Sbjct: 190 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 231 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 125 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 184 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 185 TSPSYSPTSPSY-SPTSPSY 203 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 118 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 177 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 178 TSPSYSPTSPSY-SPTSPSY 196 Score = 40.8 bits (94), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 111 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 170 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 171 TSPSYSPTSPSY-SPTSPSY 189 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/104 (23%), Positives = 41/104 (39%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 ++P+ T S S Y +P+Y +P+YS P+YS + Y TP+ Sbjct: 325 SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 384 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 Y P+Y + +Y +P Y S +P++ Sbjct: 385 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY-SPTSPTY 427 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 216 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 275 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 276 TSPNYSPTSPSY-SPTSPSY 294 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 174 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 233 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 234 TSPSYSPTSPNY-SPTSPNY 252 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 167 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 226 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 227 TSPSYSPTSPSY-SPTSPNY 245 Score = 38.9 bits (89), Expect = 0.007 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 188 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 247 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 248 TSPNYTPTSPSY-SPTSPSY 266 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 209 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 268 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 269 TSPNYTPTSPNY-SPTSPSY 287 Score = 38.1 bits (87), Expect = 0.012 Identities = 23/95 (24%), Positives = 33/95 (34%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + +Y +P Y +P YS P YS + Y +PR Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 SY P Y + Y +P Y Sbjct: 309 TPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 343 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 195 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 254 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 255 TSPSYSPTSPSY-SPTSPNY 273 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/96 (21%), Positives = 37/96 (38%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 ++P + + T S S SY +P+Y +P YS P Y+ + Y +P+ Sbjct: 304 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 363 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 +Y P+Y + +Y +P Y Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 399 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 109 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 168 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 169 SPTSPSY-SPTSPSY 182 Score = 37.0 bits (84), Expect = 0.026 Identities = 25/103 (24%), Positives = 38/103 (36%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN + T S + SY +P Y +P YS P YS + Y +P Sbjct: 242 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 +Y P Y + SY +P Y + +PS+ Sbjct: 302 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY-TPTSPSY 343 Score = 37.0 bits (84), Expect = 0.026 Identities = 19/72 (26%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P Y+ P YS + Y +P SY P Y Sbjct: 237 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 296 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 297 TSPSYSPSSPRY 308 Score = 37.0 bits (84), Expect = 0.026 Identities = 18/72 (25%), Positives = 26/72 (36%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P Y+ + Y +P +Y P Y Sbjct: 230 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 289 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 290 TSPSYSPTSPSY 301 Score = 35.8 bits (81), Expect = 0.058 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y ++P SY P+Y Sbjct: 279 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 338 Query: 338 VATSYGIVAPGY 373 + SY +P Y Sbjct: 339 TSPSYSPSSPEY 350 Score = 35.8 bits (81), Expect = 0.058 Identities = 24/103 (23%), Positives = 39/103 (37%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +PN S + S + SY +PRY +P Y+ P YS + Y +P+ Sbjct: 277 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 Y P+Y + Y +P Y S +P++ Sbjct: 337 TPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY-SPTSPTY 378 Score = 34.3 bits (77), Expect = 0.17 Identities = 20/72 (27%), Positives = 27/72 (37%) Frame = +2 Query: 182 YDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIV 361 Y +P YS P YS + Y +P SY P Y + SY Sbjct: 105 YTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 164 Query: 362 APGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 165 SPSY-SPTSPSY 175 Score = 33.1 bits (74), Expect = 0.37 Identities = 16/69 (23%), Positives = 27/69 (39%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P YS P+YS + Y +P +Y P+Y Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 423 Query: 341 ATSYGIVAP 367 + +Y +P Sbjct: 424 SPTYSPTSP 432 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P Y P+YS P YS + Y +P+ Y P Y Sbjct: 371 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 430 Query: 341 A---TSYGIVAPGYDSVVAPSH 397 + ++Y +PGY S +P++ Sbjct: 431 SPKGSTYSPTSPGY-SPTSPTY 451 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/69 (23%), Positives = 28/69 (40%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P+Y +P YS P+YS + Y +P+ +Y P Y Sbjct: 399 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK-----------GSTYSPTSPGYSPT 447 Query: 341 ATSYGIVAP 367 + +Y + +P Sbjct: 448 SPTYSLTSP 456 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Frame = +2 Query: 191 VAPRYSVVGPRYSIVA-SGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAP 367 ++P YS P Y + GY ++P SY P Y + SY +P Sbjct: 86 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP 145 Query: 368 GYDSVVAPSH 397 Y S +PS+ Sbjct: 146 SY-SPTSPSY 154
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1599 Score = 40.8 bits (94), Expect = 0.002 Identities = 25/98 (25%), Positives = 34/98 (34%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1493 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1552 Query: 338 VATSYGIVAPGYDSVVAPSHIXXXXXXXXXXXPRNNIG 451 + SY +P Y S +PS+ +N G Sbjct: 1553 TSPSYSPTSPSY-SPTSPSYSVSMSSFSNKNKSKNQDG 1589 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1486 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1545 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1546 TSPSYSPTSPSY-SPTSPSY 1564 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1479 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1538 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1539 TSPSYSPTSPSY-SPTSPSY 1557 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1472 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1531 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1532 TSPSYSPTSPSY-SPTSPSY 1550 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1530 SPTSPSY-SPTSPSY 1543 Score = 35.8 bits (81), Expect = 0.058 Identities = 27/104 (25%), Positives = 40/104 (38%) Frame = +2 Query: 86 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 265 +TP+SD+ S + + S D + R +P YS P YS + Y +P Sbjct: 1435 STPSSDSFSISSGNWSPTHLEMAYSRD-LGERLSPTSPSYSPTSPSYSPTSPSYSPTSPS 1493 Query: 266 XXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +PS+ Sbjct: 1494 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSY 1536
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1635 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1695 TSPSYSPTSPSY-SPTSPSY 1713 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1688 TSPSYSPTSPSY-SPTSPSY 1706 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1681 TSPSYSPTSPSY-SPTSPSY 1699 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1674 TSPSYSPTSPSY-SPTSPSY 1692 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1667 TSPSYSPTSPSY-SPTSPSY 1685 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1659 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1660 TSPSYSPTSPSY-SPTSPSY 1678 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1593 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1652 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1653 TSPSYSPTSPSY-SPTSPSY 1671 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1586 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1645 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1646 TSPSYSPTSPSY-SPTSPSY 1664 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1639 TSPSYSPTSPSY-SPTSPSY 1657 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1572 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1631 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1632 TSPSYSPTSPSY-SPTSPSY 1650 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1565 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1625 TSPSYSPTSPSY-SPTSPSY 1643 Score = 40.4 bits (93), Expect = 0.002 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1558 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1618 TSPSYSPTSPSY-SPTSPSY 1636 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/80 (27%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1551 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1610 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1611 TSPSYSPTSPSY-SPTSPSY 1629 Score = 38.5 bits (88), Expect = 0.009 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1709 TSPSYSPTSPQY-SPRSPSY 1727 Score = 37.7 bits (86), Expect = 0.015 Identities = 21/75 (28%), Positives = 29/75 (38%) Frame = +2 Query: 173 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 352 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608 Query: 353 GIVAPGYDSVVAPSH 397 +P Y S +PS+ Sbjct: 1609 SPTSPSY-SPTSPSY 1622 Score = 37.0 bits (84), Expect = 0.026 Identities = 21/78 (26%), Positives = 30/78 (38%) Frame = +2 Query: 164 DFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVA 343 D +P + +P YS P YS + Y +P SY P Y + Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1598 Query: 344 TSYGIVAPGYDSVVAPSH 397 SY +P Y S +PS+ Sbjct: 1599 PSYSPTSPSY-SPTSPSY 1615
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 40.0 bits (92), Expect = 0.003 Identities = 19/73 (26%), Positives = 28/73 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +PR +Y P Y Sbjct: 1643 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1702 Query: 338 VATSYGIVAPGYD 376 + +Y +P Y+ Sbjct: 1703 TSPTYSPTSPSYE 1715 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/80 (27%), Positives = 32/80 (40%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY PRY Sbjct: 1622 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSP 1681 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +P++ Sbjct: 1682 TSPTYSPTSPTY-SPTSPTY 1700 Score = 37.0 bits (84), Expect = 0.026 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1636 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSP 1695 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1696 TSPTYSPTSPTY-SPTSPSY 1714 Score = 36.6 bits (83), Expect = 0.034 Identities = 21/76 (27%), Positives = 30/76 (39%) Frame = +2 Query: 170 VAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATS 349 V+P Y +P YS P YS + Y +P SY P Y + S Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671 Query: 350 YGIVAPGYDSVVAPSH 397 Y +P Y S +P++ Sbjct: 1672 YSPSSPRY-SPTSPTY 1686 Score = 35.8 bits (81), Expect = 0.058 Identities = 21/80 (26%), Positives = 30/80 (37%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1615 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1674 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + Y +P Y S +P++ Sbjct: 1675 SSPRYSPTSPTY-SPTSPTY 1693 Score = 33.5 bits (75), Expect = 0.29 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRY---SIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRY 331 + +P Y +P YS P + S V+ Y +P SY P Y Sbjct: 1585 FSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1644 Query: 332 DMVATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1645 SPTSPSYSPTSPSY-SPTSPSY 1665 Score = 33.5 bits (75), Expect = 0.29 Identities = 21/79 (26%), Positives = 32/79 (40%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 340 Y +P + M +P YS P YS + + ++P SY P Y Sbjct: 1578 YSPASPGFSMTSPHYSPTSPSYSPTSPAHHGQSP----VSPSYSPTSPSYSPTSPSYSPT 1633 Query: 341 ATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1634 SPSYSPTSPSY-SPTSPSY 1651 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/78 (23%), Positives = 27/78 (34%) Frame = +2 Query: 140 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 319 TY F +P+Y +P YS P Y+ + Y +P Y Sbjct: 1765 TYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPS 1824 Query: 320 VPRYDMVATSYGIVAPGY 373 P Y + +Y +P Y Sbjct: 1825 SPTYSPSSPTYSPASPSY 1842 Score = 32.0 bits (71), Expect = 0.83 Identities = 18/70 (25%), Positives = 25/70 (35%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1650 SYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSP 1709 Query: 338 VATSYGIVAP 367 + SY +P Sbjct: 1710 TSPSYEGYSP 1719 Score = 31.2 bits (69), Expect = 1.4 Identities = 21/80 (26%), Positives = 33/80 (41%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P+Y +P+YS P Y+ + Y +PR Y P Y Sbjct: 1737 SYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR--------AFSSPQYSPTSPTYSP 1788 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +P++ Sbjct: 1789 TSPSYTPSSPQY-SPTSPTY 1807 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 6/84 (7%) Frame = +2 Query: 140 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 319 T S Y +P+Y +P YS P YS + Y +P+ +Y+ Sbjct: 1710 TSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPT 1769 Query: 320 VPR------YDMVATSYGIVAPGY 373 PR Y + +Y +P Y Sbjct: 1770 SPRAFSSPQYSPTSPTYSPTSPSY 1793
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/74 (27%), Positives = 29/74 (39%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +PR +Y P Y Sbjct: 1639 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1698 Query: 338 VATSYGIVAPGYDS 379 + +Y +P Y+S Sbjct: 1699 TSPTYSPTSPSYES 1712 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/80 (27%), Positives = 32/80 (40%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P SY PRY Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1677 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +P++ Sbjct: 1678 TSPTYSPTSPTY-SPTSPTY 1696 Score = 36.6 bits (83), Expect = 0.034 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = +2 Query: 158 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 337 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSP 1691 Query: 338 VATSYGIVAPGYDSVVAPSH 397 + +Y +P Y S +PS+ Sbjct: 1692 TSPTYSPTSPTY-SPTSPSY 1710 Score = 36.6 bits (83), Expect = 0.034 Identities = 24/94 (25%), Positives = 34/94 (36%) Frame = +2 Query: 116 SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXX 295 S T +S V+P Y +P YS P YS + Y +P Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649 Query: 296 XXXSYDMFVPRYDMVATSYGIVAPGYDSVVAPSH 397 SY P Y + SY +P Y S +P++ Sbjct: 1650 TSPSYSPSSPSYSPSSPSYSPSSPRY-SPTSPTY 1682 Score = 36.2 bits (82), Expect = 0.044 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGPRYSIV--ASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYD 334 Y +P++ M +P YS P YS A+G +P SY P Y Sbjct: 1575 YSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYS 1634 Query: 335 MVATSYGIVAPGYDSVVAPSH 397 + SY +P Y S +PS+ Sbjct: 1635 PTSPSYSPTSPSY-SPTSPSY 1654 Score = 33.9 bits (76), Expect = 0.22 Identities = 18/78 (23%), Positives = 27/78 (34%) Frame = +2 Query: 140 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 319 TY F +P+Y +P YS P Y+ + Y +P Y Sbjct: 1764 TYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPT 1823 Query: 320 VPRYDMVATSYGIVAPGY 373 P Y + +Y +P Y Sbjct: 1824 SPTYSPSSPTYSPASPSY 1841 Score = 33.9 bits (76), Expect = 0.22 Identities = 23/95 (24%), Positives = 34/95 (35%) Frame = +2 Query: 89 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 268 +P+ S + S S SY +PRY +P YS P YS + Y +P Sbjct: 1644 SPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSP-T 1702 Query: 269 XXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGY 373 Y P+Y + +Y +P Y Sbjct: 1703 YSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSY 1737 Score = 33.1 bits (74), Expect = 0.37 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Frame = +2 Query: 140 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 319 +Y+S Y +P+Y +P YS P YS + Y +P+ +Y+ Sbjct: 1709 SYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPT 1768 Query: 320 VPR------YDMVATSYGIVAPGY 373 PR Y + +Y +P Y Sbjct: 1769 SPRGFSSPQYSPTSPTYSPTSPSY 1792 Score = 32.0 bits (71), Expect = 0.83 Identities = 22/86 (25%), Positives = 29/86 (33%) Frame = +2 Query: 116 SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXX 295 S+T +S S A V+P YS P YS + Y +P Sbjct: 1583 SMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642 Query: 296 XXXSYDMFVPRYDMVATSYGIVAPGY 373 SY P Y + SY +P Y Sbjct: 1643 TSPSYSPTSPSYSPSSPSYSPSSPSY 1668
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 37.4 bits (85), Expect = 0.020 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 6/85 (7%) Frame = +2 Query: 161 YDFVAPRYDMVAPRYSVVGP------RYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFV 322 Y +P+Y +P YS P +YS S Y +PR Y Sbjct: 1784 YSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1843 Query: 323 PRYDMVATSYGIVAPGYDSVVAPSH 397 P Y A +Y +P Y S APSH Sbjct: 1844 PTYTPTARNYSPTSPMY-SPTAPSH 1867 Score = 36.2 bits (82), Expect = 0.044 Identities = 26/104 (25%), Positives = 40/104 (38%) Frame = +2 Query: 68 PTK*L*ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGY 247 PT ++P+ S++ G++ S +Y +P Y +P YS P YS + Y Sbjct: 1647 PTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCY 1706 Query: 248 GMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSYGIVAPGYDS 379 +P SY P Y V SY +P Y + Sbjct: 1707 SPTSP--------------SYSPTSPNYTPVTPSYSPTSPNYSA 1736
>CCD70_HUMAN (Q6NSX1) Coiled-coil domain-containing protein 70 precursor| Length = 233 Score = 33.5 bits (75), Expect = 0.29 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 12/109 (11%) Frame = -3 Query: 458 WEHQCCFWERQHCHIREQQQCGWEQQHYRNRER----QYRN--------W*QPCRIWGQT 315 WE + FWE + +E++ ++ +R E+ +YR W + +W + Sbjct: 87 WEEERPFWEEEKTFWKEEKSFWEMEKSFREEEKTFWKKYRTFWKEDKAFWKEDNALWERD 146 Query: 314 YRNXXXXXXXXXXXXXIWEFPYRIRKPQYCIWDQQHCIWEQPCRIWEQQ 168 +W + + + +W+ + +WE+ +WE++ Sbjct: 147 RNLLQEDKALWEEEKALWVEERALLEGEKALWEDKTSLWEEENALWEEE 195
>CCD70_MOUSE (Q9D9B0) Coiled-coil domain-containing protein 70 precursor| Length = 223 Score = 33.1 bits (74), Expect = 0.37 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 12/109 (11%) Frame = -3 Query: 458 WEHQCCFWERQHCHIREQQQCGWEQQHYRNRER----QYRN--------W*QPCRIWGQT 315 WE + FWE + +E++ ++ +R E+ +YR W + +W + Sbjct: 76 WEEERPFWEEEKIFWKEEKTFWEMEKSFREEEKTFWKKYRTFWKEDKAFWREDNALWERD 135 Query: 314 YRNXXXXXXXXXXXXXIWEFPYRIRKPQYCIWDQQHCIWEQPCRIWEQQ 168 +W + + +W+ + +WE+ +WE++ Sbjct: 136 RNLLQEDKALWEEEKALWVEERALLAEEKALWEDKKSLWEEENALWEEE 184
>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)| Length = 1767 Score = 32.7 bits (73), Expect = 0.49 Identities = 21/64 (32%), Positives = 32/64 (50%) Frame = +2 Query: 2 GKYYLSRNMLLYIFMRLHNTIGPTK*L*ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPR 181 G+ Y+ R I ++LH T+ TK L NSD+ VS V + HS + S + P Sbjct: 788 GEVYVGR-----IIVKLHETLSKTKDLSEAANSDSSVSFVCDVVHSFFSSAGGGLLMPPS 842 Query: 182 YDMV 193 D++ Sbjct: 843 EDLL 846
>CCD70_MACFA (Q4R9C9) Coiled-coil domain-containing protein 70 precursor| Length = 232 Score = 32.7 bits (73), Expect = 0.49 Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 12/109 (11%) Frame = -3 Query: 458 WEHQCCFWERQHCHIREQQQCGWEQQHYRNRERQYRN------------W*QPCRIWGQT 315 WE + FWE + +E++ ++ +R E+ + W + +W + Sbjct: 87 WEEERPFWEEEKSFWKEEKSFWEMEKSFREEEKTFWKKYRIFWKDDKAFWKEDNALWEKD 146 Query: 314 YRNXXXXXXXXXXXXXIWEFPYRIRKPQYCIWDQQHCIWEQPCRIWEQQ 168 +W + + + +W+ + +WE+ +WE++ Sbjct: 147 RNLLQEDKALWEEEKALWVEERALLEEEKALWEDKTSLWEEENALWEEE 195
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = -3 Query: 470 HCQIWEHQCCFWERQHCHIREQQQCGWEQQHYRNRERQ 357 H Q+ HQ + QH H ++QQQ +QQH++ +++Q Sbjct: 178 HQQMQHHQ--LQQHQHQHQQQQQQQQHQQQHHQQQQQQ 213
>DGKZ_HUMAN (Q13574) Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride| kinase zeta) (DGK-zeta) (DAG kinase zeta) Length = 1117 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -3 Query: 230 YCIWDQQHCIWEQPCRIWEQQSRRRCMICKWSVHLP 123 +C +Q+C+ R+ + SRR+C CK VH P Sbjct: 298 FCYVGEQYCV----ARMLKSVSRRKCAACKIVVHTP 329
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 29.3 bits (64), Expect = 5.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 132 PSSVTELTLLSEFGVAHNHLVGPI 61 P S+ +L+ LS F VA+N L GPI Sbjct: 598 PPSLVKLSFLSTFSVAYNKLSGPI 621
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 132 PSSVTELTLLSEFGVAHNHLVGPI 61 PSSVTE+T L ++HNH G I Sbjct: 422 PSSVTEMTKLQILNLSHNHFDGYI 445
>DOA_DROME (P49762) Serine/threonine-protein kinase Doa (EC 2.7.12.1) (Protein| darkener of apricot) Length = 832 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 452 HQCCFWERQHCHIREQQQCGWEQQHYRNRERQYRNW 345 +Q +Q H ++QQQ EQQ Y +R + NW Sbjct: 132 YQRLLQHQQQQHHQQQQQQHQEQQQYPQHKRPFLNW 167
>CBK1_DEBHA (Q6BLJ9) Serine/threonine-protein kinase CBK1 (EC 2.7.11.1)| Length = 716 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -3 Query: 473 QHCQIWEHQCCFWERQH---CHIREQQQCGWEQQHYRNRERQ 357 Q Q++ HQ ++QH H ++QQ +QQH +N++ Q Sbjct: 10 QKQQLYFHQMQAEQQQHQQQLHYKQQQHIQQQQQHQQNQQNQ 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,551,532 Number of Sequences: 219361 Number of extensions: 1040168 Number of successful extensions: 3217 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2981 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
