Clone Name | rbart40b09 |
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Clone Library Name | barley_pub |
>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1 precursor, mRNA, complete cds Length = 1079 Score = 565 bits (285), Expect = e-158 Identities = 410/449 (91%), Gaps = 7/449 (1%) Strand = Plus / Minus Query: 30 tgctatatatatttatgaggttacataacacgattggccccacc-aagtgattgtgagct 88 |||||||||||| |||| |||||||||||| |||| ||||||| ||||||||||| ||| Sbjct: 1064 tgctatatatatccatgaagttacataacactattgaccccacccaagtgattgtgggct 1005 Query: 89 acaccgaactcggacaacaaggtgagctccgtcacggaagatggacac--tccacttaca 146 |||| ||||| ||||||| | | |||||| ||| |||||||| | || | |||||||| Sbjct: 1004 acactgaacttggacaaccacataagctccatcaaggaagatgcaaacaattcacttaca 945 Query: 147 aatcatgcatctcctacgactttgttgctcccagatacgacatggttgctcccagataca 206 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 944 aatcattcatctcctacgaccttgttgctcccagatacgacatggttgctcccagataca 885 Query: 207 gtgttgttggtcccagatacagtattgtggcttccggatacggtatggaaactcccagat 266 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct: 884 gtgttgttggtcccagatacagtattgtggctcccggatacggtatggaagctcccggat 825 Query: 267 acattgttgtcattcccggatacggcattgttgttgtcagttacgatatgtttgtcccca 326 ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 824 acattattgtc----ccggatacggcattgttattgtcagtcacgatatgtttgtcccca 769 Query: 327 gatacgacatggttgctaccagttacggtattgtcgctcccggttacgatagtgttgttg 386 ||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||| Sbjct: 768 gatacaacatggttgctaccagttacggtattgtcgttcccggttatgacagtgttgttg 709 Query: 387 ctcccagccacattgttgttgttcccggatatgacagtgttgtcgttcccagaaacaaca 446 |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 708 ctcccagccacattgttgttattcccggatatgacagtgttgtcattcccagaaacaacg 649 Query: 447 ttggtgctcccagatctgacagtgttgtt 475 ||||||||||||||||||||||||||||| Sbjct: 648 ttggtgctcccagatctgacagtgttgtt 620
>emb|AJ277399.1|LPE277399 Lolium perenne partial mRNA for ice recrystallisation inhibition protein Length = 357 Score = 260 bits (131), Expect = 4e-66 Identities = 271/315 (86%), Gaps = 2/315 (0%) Strand = Plus / Minus Query: 162 acgactttgttgctcccagatacgacatggttgctcccagatacagtgttgttggtccca 221 |||||||||||||| |||||||| || ||||||||||||||||| || |||||| |||| Sbjct: 344 acgactttgttgcttccagatacaacgtggttgctcccagatacggtattgttgctcccg 285 Query: 222 gatacagtattgtggcttccggatacggtatggaaactcccagatacattgttgtcattc 281 || ||||||||||| | |||||||||||||| || ||||| |||||||| || || ||| Sbjct: 284 gagacagtattgtgccccccggatacggtatgaaagctcccggatacattattatcgttc 225 Query: 282 ccggatacggcattgttgttgtcagttacgatatg-tttgtccccagatacgacatggtt 340 ||||||||| |||||||||||| || |||||||| |||||||| |||||||||||||| Sbjct: 224 ccggatacgttattgttgttgtctgtaacgatatggtttgtccct-gatacgacatggtt 166 Query: 341 gctaccagttacggtattgtcgctcccggttacgatagtgttgttgctcccagccacatt 400 ||| || |||||||||||||| |||| |||||| ||||||||||||||||| |||| | Sbjct: 165 gctgccggttacggtattgtcattcccacttacgacagtgttgttgctcccagacacact 106 Query: 401 gttgttgttcccggatatgacagtgttgtcgttcccagaaacaacattggtgctcccaga 460 ||||||| ||| |||||||| |||||||| ||||||| || |||||| ||||||| || Sbjct: 105 attgttgtccccagatatgacggtgttgtcattcccagcaagaacatttttgctcccgga 46 Query: 461 tctgacagtgttgtt 475 ||||||||| ||||| Sbjct: 45 tctgacagtattgtt 31
>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2 precursor, mRNA, complete cds Length = 1596 Score = 83.8 bits (42), Expect = 5e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 408 ttcccggatatgacagtgttgtcgttcccagaaacaacattggtgctcccagatctgaca 467 ||||||||||||||||||||||| |||||||| | ||||||| || |||||||||||| | Sbjct: 1058 ttcccggatatgacagtgttgtcattcccagatagaacattgttggtcccagatctgata 999 Query: 468 gtgttg 473 |||||| Sbjct: 998 gtgttg 993 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 161 tacgactttgttgctcccagatacgacatggttgctcccagataca 206 |||||||||||| ||||||||||||||||||| |||||||||||| Sbjct: 1239 tacgactttgttattcccagatacgacatggtttctcccagataca 1194 Score = 60.0 bits (30), Expect = 7e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 60 cgattggccccaccaagtgattgtgagctacaccgaactcggacaa 105 ||||||||||||||||| |||||||| |||||| ||||| |||||| Sbjct: 1345 cgattggccccaccaagggattgtgaactacactgaacttggacaa 1300
>ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3033 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 65 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtgagctccgtca 122 ||||||||||||||||||||||| |||| ||||| ||||| ||||| || ||||||| Sbjct: 1838 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 1781
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 65 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtgagctccgtca 122 ||||||||||||||||||||||| |||| ||||| ||||| ||||| || ||||||| Sbjct: 425934 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 425877 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 aacaacattggtgctcccagatct 463 |||||||||| ||||||||||||| Sbjct: 6979725 aacaacattgctgctcccagatct 6979702
>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0585H11 Length = 149371 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 65 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtgagctccgtca 122 ||||||||||||||||||||||| |||| ||||| ||||| ||||| || ||||||| Sbjct: 28098 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 28041
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 65 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtgagctccgtca 122 ||||||||||||||||||||||| |||| ||||| ||||| ||||| || ||||||| Sbjct: 1964 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 1907
>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full insert sequence Length = 2958 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 65 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtgagctccgtca 122 ||||||||||||||||||||||| |||| ||||| ||||| ||||| || ||||||| Sbjct: 1502 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 1445
>dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full insert sequence Length = 2238 Score = 60.0 bits (30), Expect = 7e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 65 ggccccaccaagtgattgtgagctacaccgaactcggacaacaaggtgagctccgtca 122 ||||||||||||||||||||||| |||| ||||| ||||| ||||| || ||||||| Sbjct: 649 ggccccaccaagtgattgtgagccacactgaactttgacaagaaggtcaggtccgtca 592
>gb|BT024033.1| Zea mays clone EL01N0423B02 mRNA sequence Length = 2283 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Minus Query: 73 caagtgattgtgagctacaccgaactcggacaacaaggtgagctccgt 120 ||||||||||||||| || | ||||| ||||| |||||||||||||| Sbjct: 775 caagtgattgtgagccacgctgaacttggacaggaaggtgagctccgt 728
>emb|BX072551.7| Zebrafish DNA sequence from clone CH211-117G17 in linkage group 17, complete sequence Length = 164264 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tatgttgctatatatatttat 45 ||||||||||||||||||||| Sbjct: 139840 tatgttgctatatatatttat 139820
>dbj|AK098142.1| Homo sapiens cDNA FLJ40823 fis, clone TRACH2011093 Length = 2364 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 atgttgctatatatatttatgaggt 50 |||||||||||||| |||||||||| Sbjct: 1753 atgttgctatatatgtttatgaggt 1777
>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete sequence Length = 167444 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 atgttgctatatatatttatgaggt 50 |||||||||||||| |||||||||| Sbjct: 101885 atgttgctatatatgtttatgaggt 101861
>gb|AF100675.2| Caenorhabditis elegans cosmid Y55H10A, complete sequence Length = 24427 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttgttgttgttcccggatat 418 |||||||||||||||||||| Sbjct: 11555 ttgttgttgttcccggatat 11574 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttgttgttgttcccggatat 418 |||||||||||||||||||| Sbjct: 2671 ttgttgttgttcccggatat 2690
>emb|Z74039.1|CEK03B8 Caenorhabditis elegans Cosmid K03B8, complete sequence Length = 29132 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 atacattgttgtcattcccg 284 |||||||||||||||||||| Sbjct: 12445 atacattgttgtcattcccg 12464
>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11 Length = 344249 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ccgaactcggacaacaaggt 111 |||||||||||||||||||| Sbjct: 180716 ccgaactcggacaacaaggt 180735
>gb|AC162856.2| Mus musculus chromosome 8, clone RP23-51I4, complete sequence Length = 247161 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gttcccagaaacaacattgg 450 |||||||||||||||||||| Sbjct: 14662 gttcccagaaacaacattgg 14681
>gb|AC157019.8| Mus musculus 10 BAC RP24-377N13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 233155 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 tcccagaaacaacattggtg 452 |||||||||||||||||||| Sbjct: 173844 tcccagaaacaacattggtg 173863
>gb|AC116675.11| Mus musculus chromosome 8, clone RP23-16M20, complete sequence Length = 214196 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gttcccagaaacaacattgg 450 |||||||||||||||||||| Sbjct: 73146 gttcccagaaacaacattgg 73165
>gb|AF038613.2| Caenorhabditis elegans cosmid F42A6, complete sequence Length = 38222 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttgttgttgttcccggatat 418 |||||||||||||||||||| Sbjct: 36993 ttgttgttgttcccggatat 37012
>ref|NM_067930.1| Caenorhabditis elegans Y55H10A.2 (Y55H10A.2) mRNA, complete cds Length = 1155 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttgttgttgttcccggatat 418 |||||||||||||||||||| Sbjct: 697 ttgttgttgttcccggatat 716
>ref|NM_073492.1| Caenorhabditis elegans Nematode AStacin protease family member (nas-19) (nas-19) mRNA, complete cds Length = 1440 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 atacattgttgtcattcccg 284 |||||||||||||||||||| Sbjct: 786 atacattgttgtcattcccg 767
>ref|NM_067929.2| Caenorhabditis elegans F42A6.1 (F42A6.1) mRNA, complete cds Length = 1005 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 ttgttgttgttcccggatat 418 |||||||||||||||||||| Sbjct: 628 ttgttgttgttcccggatat 647
>gb|AC010139.4|AC010139 Homo sapiens BAC clone RP11-194G10 from 3, complete sequence Length = 161407 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aatattatttaagcaggaat 25 |||||||||||||||||||| Sbjct: 107126 aatattatttaagcaggaat 107107
>gb|AC091493.2| Homo sapiens chromosome 3 clone RP11-357E4 map 3p, complete sequence Length = 186953 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aatattatttaagcaggaat 25 |||||||||||||||||||| Sbjct: 12359 aatattatttaagcaggaat 12340
>gb|AC154138.11| Mus musculus 10 BAC RP23-124J6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179306 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 ttcccggatacggcattgtt 298 |||||||||||||||||||| Sbjct: 170133 ttcccggatacggcattgtt 170114
>dbj|AP005516.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10 Length = 200968 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 aacaacattggtgctcccagatct 463 |||||||||| ||||||||||||| Sbjct: 6414 aacaacattgctgctcccagatct 6391
>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0668C05 Length = 142081 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 aacaacattggtgctcccagatct 463 |||||||||| ||||||||||||| Sbjct: 103540 aacaacattgctgctcccagatct 103517
>emb|AJ748318.1| Bdellovibrio bacteriovorus fliC5 gene for flagellin Length = 3949 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ccgaactcggacaacaaggt 111 |||||||||||||||||||| Sbjct: 3181 ccgaactcggacaacaaggt 3200
>gb|AC027700.11| Mus musculus chromosome 10, clone RP23-145G7, complete sequence Length = 227454 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 ttcccggatacggcattgtt 298 |||||||||||||||||||| Sbjct: 189825 ttcccggatacggcattgtt 189844 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,823,105 Number of Sequences: 3902068 Number of extensions: 4823105 Number of successful extensions: 72423 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72292 Number of HSP's gapped (non-prelim): 110 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)