ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40b08 |
|---|---|
| Clone Library Name | barley_pub |
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 38.1 bits (87), Expect = 0.014 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%) Frame = +1 Query: 232 GQQLHVYTHIHLPPS----DRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHH 399 G QLH H+ P D P PP S H H + S +C P G Sbjct: 230 GHQLHENAHLSESPKPDTPDTPENPPTSGLHHHHHRHKGPQRQGHSDNCDTP---LGSES 286 Query: 400 EEPNCPLREVCRPNPHRHKMC 462 +P+ P +++CR +C Sbjct: 287 LQPSLPQKKLCRKRCINQLLC 307 Score = 30.0 bits (66), Expect = 3.9 Identities = 22/87 (25%), Positives = 32/87 (36%) Frame = +1 Query: 229 RGQQLHVYTHIHLPPSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEP 408 R Q V ++ L ++ ++ S H H P P P H G H Sbjct: 179 RPQDEDVCKNVFLATKEKTAE--ASQRHHHPHPHSHPHPHPHPHPHPHPHPHHG-HQLHE 235 Query: 409 NCPLREVCRPNPHRHKMCPPAASLHHY 489 N L E +P+ PP + LHH+ Sbjct: 236 NAHLSESPKPDTPDTPENPPTSGLHHH 262 Score = 29.6 bits (65), Expect = 5.1 Identities = 17/71 (23%), Positives = 24/71 (33%) Frame = +1 Query: 244 HVYTHIHLPPSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLR 423 H + H H P P P ++ +HL + P+ + P G HH Sbjct: 210 HSHPHPHPHPHPHPHPHPHHGHQLHENAHLSESPKPDTPDTPENPPTSGLHHHH------ 263 Query: 424 EVCRPNPHRHK 456 HRHK Sbjct: 264 -------HRHK 267
>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 20) Length = 726 Score = 35.0 bits (79), Expect = 0.12 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Frame = +2 Query: 263 ICPPLIDLLNHPAPHMNTKERATCWMIQEHKVSIVPDRDNIKANIMRNPTVLCAR--CAG 436 + P LI+ H+N TCW H +PD +K + P +C R CA Sbjct: 571 VIPNLIEHSTVQQFHLND---TTCWGTDYHLGMAIPDIGEVKDGTVCGPEKICIRKKCAS 627 Query: 437 LTHTDTKCVHQQPACTIIG 493 + H C Q+ C + G Sbjct: 628 MVHLSQAC--QRKTCNMRG 644
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 34.3 bits (77), Expect = 0.21 Identities = 24/75 (32%), Positives = 28/75 (37%) Frame = +1 Query: 274 SDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLREVCRPNPHRH 453 S PSQPPC+ R++ P QH P P EP P E P H Sbjct: 1006 SPEPSQPPCAVCIGHRDAPRASSPPRYLQHDPFP------FFPEPRAPESE---PPHHEP 1056 Query: 454 KMCPPAASLHHYRRP 498 PPA + H P Sbjct: 1057 PYIPPAVCIGHRDAP 1071
>Y201_ENCCU (Q8ST90) Hypothetical protein ECU02_0010/ECU04_1710| Length = 220 Score = 32.3 bits (72), Expect = 0.79 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 4/79 (5%) Frame = +1 Query: 256 HIHLPPSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLREVCR 435 H PP PP S + ++E+ P S HCP +Q H P P + Sbjct: 72 HSQHPPRPSELSPPLSCFLCQKETLTSPRPSPPSHHCPESLTYQ-VHQPNPKSPSGPLVH 130 Query: 436 PN----PHRHKMCPPAASL 480 N R + PP +SL Sbjct: 131 SNRFKASERRRPNPPTSSL 149
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 32.3 bits (72), Expect = 0.79 Identities = 18/60 (30%), Positives = 24/60 (40%) Frame = +1 Query: 307 YEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLREVCRPNPHRHKMCPPAASLHH 486 + H E H +P + H P +H HHEE + P+PH H P HH Sbjct: 63 HHHPEEHH---EPHHEEHHHHHPEEHHEPHHEEHHHH-----HPHPHHHHHHHPPHHHHH 114
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/102 (21%), Positives = 32/102 (31%) Frame = +1 Query: 148 RGVIPHAPLCSALGXXXXXXXXQERHVRGQQLHVYTHIHLPPSDRPSQPPCSSYEHKRES 327 + + H P + G E Q + H+H P + PP Y H+ + Sbjct: 82 KAALTHHPAAMSNGNMSTIGHMMEMMGSRQDQTPHHHLHSHPHQHQTLPPHHPYPHQHQ- 140 Query: 328 HLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLREVCRPNPHRH 453 H P Q H H H + P P+P H Sbjct: 141 HPAHHPHPQPHHQQNHPHHHSHSHLHAH-PAHHQTSPHPPLH 181
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 31.2 bits (69), Expect = 1.8 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Frame = +1 Query: 256 HIHLPPSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*Q-----HQGKHHEEPNC-P 417 H PP D P + R+ R QH P P +H ++P P Sbjct: 72 HPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDHQHRPPPTTTTTTIKDPQHPQDPLLLP 131 Query: 418 LREVCRPNPH--RHKMCPPAASLHHYRRPTSDG 510 + + +PH R PP+A HH++ P G Sbjct: 132 TKTLQEEDPHLLRPTRDPPSAKTHHHQDPPGGG 164
>RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen (Fragment)| Length = 760 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Frame = +1 Query: 304 SYEHKRESHLLDDPRTQS-----QHCPRP*QHQGKHHEEPNCPLREVCRPNPHRHKMCPP 468 S E E H +DD + +H P +H EEP V P + P Sbjct: 220 SVEENEEEHTVDDEHVEEHTADDEHVEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEP 279 Query: 469 AASLHHYRRPTSD 507 + H P SD Sbjct: 280 TVAEEHVEEPASD 292
>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)| Length = 264 Score = 30.8 bits (68), Expect = 2.3 Identities = 24/88 (27%), Positives = 32/88 (36%) Frame = +1 Query: 244 HVYTHIHLPPSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLR 423 H + ++ PP RPS P E + L P H P G HH E + PL Sbjct: 47 HHHQELYPPPPPRPSYP-----ERQYSCTSLQGPGNSRAHGP---AQAGHHHPEKSQPL- 97 Query: 424 EVCRPNPHRHKMCPPAASLHHYRRPTSD 507 C P P P+ + +P D Sbjct: 98 --CEPAPLSGTSASPSPAPPACSQPAPD 123
>RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen precursor| Length = 1073 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Frame = +1 Query: 304 SYEHKRESHLLDDPRTQS-----QHCPRP*QHQGKHHEEPNCPLREVCRPNPHRHKMCPP 468 S E E H +DD + +H P +H EEP V P + P Sbjct: 434 SVEENEEEHTVDDEHVEEHTADDEHVEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEP 493 Query: 469 AASLHHYRRPTSD 507 + H P SD Sbjct: 494 TVAEEHVEEPASD 506
>PAR3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome region candidate| gene 19 protein (Partitioning-defective 3-like protein) (PAR3-L protein) (PAR3-beta) Length = 1205 Score = 30.4 bits (67), Expect = 3.0 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Frame = +1 Query: 247 VYTHIHLP--PSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPL 420 +Y LP P P PP SY E + D Q P QH+G P Sbjct: 1104 LYKERELPYYPGAHPMHPPKGSYPRPTELRVADLRYPQHYPPPPAPQHKG--------PF 1155 Query: 421 REVCRPNPHRHKMCP 465 R+ P+P +H+ P Sbjct: 1156 RQDVPPSPPQHQRMP 1170
>EXTN_DAUCA (P06599) Extensin precursor| Length = 306 Score = 30.4 bits (67), Expect = 3.0 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Frame = +1 Query: 256 HIHLPPSDRPSQPPCSS-YEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLREVC 432 H PP + S PP + Y++K +H P P H P P+ + Sbjct: 93 HFESPPPPKHSPPPPTPVYKYKSPP--------PPKHSPAPVHHYKYKSPPPPTPVYKYK 144 Query: 433 RPNPHRHKMCPPAASLHHYR 492 P P +H P HHY+ Sbjct: 145 SPPPPKHSPAPE----HHYK 160
>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC| 2.7.11.25) Length = 1011 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Frame = +1 Query: 262 HLP-PSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP 375 H P PSD PS P S +S P+ SQH P P Sbjct: 643 HAPRPSDAPSASPTPSANSTTQSQTFPCPQAPSQHPPSP 681
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 29.6 bits (65), Expect = 5.1 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Frame = +1 Query: 223 HVRGQQLHVYTHIHLPPSDRPSQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHE 402 H + QQ H + Q +H+++ D + Q P QHQ H+ Sbjct: 646 HSQHQQHQHQQQQHQHHQQQQQQQHQQQQQHQQQQQQADMLQGLGQPQAHPHQHQ---HQ 702 Query: 403 EPNCPLREV--CRPNPHRHKMCP 465 P P+ + +P+PH+H M P Sbjct: 703 PPVAPMGQPQQMQPSPHQHPMDP 725
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 29.6 bits (65), Expect = 5.1 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -2 Query: 248 TCSCWPRTCLSCY 210 TC+CWP+ CL C+ Sbjct: 657 TCNCWPKWCLLCF 669
>AMY2_SCHPO (O42918) Probable alpha-amylase meu7 precursor (EC 3.2.1.1)| (1,4-alpha-D-glucan glucanohydrolase) (Meiotic expression up-regulated protein 7) Length = 774 Score = 29.6 bits (65), Expect = 5.1 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 12/99 (12%) Frame = +1 Query: 256 HIHLPPSDRP-----SQPPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPL 420 H H RP ++P ++H+ H PR + +P KH E +C Sbjct: 286 HCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEEHCSCHH 345 Query: 421 REVCRPNPHR-----HKMCPPAASLHH--YRRPTSDGAT 516 + RP PH HK HH + RP T Sbjct: 346 DKFSRPVPHNGTKPDHKPWKHEEHCHHGKFLRPVPHNVT 384
>ODD_DROME (P23803) Protein odd-skipped| Length = 392 Score = 29.3 bits (64), Expect = 6.7 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 10/100 (10%) Frame = +1 Query: 214 QERHVRGQQLHVYTHIHLPPSDRPSQPPCSSYE---HK-------RESHLLDDPRTQSQH 363 Q++H Q+ H P P P S+ H+ R + + + Q QH Sbjct: 91 QQQHRLWLQMQQQQQQHQAPQQYPVYPTASADPVAVHQQLMNHWIRNAAIYQQQQQQQQH 150 Query: 364 CPRP*QHQGKHHEEPNCPLREVCRPNPHRHKMCPPAASLH 483 H HH P+ P+PH H + P A LH Sbjct: 151 -----PHHHHHHGHPH-------HPHPHPHHVRPYPAGLH 178
>STCK_EMENI (Q00706) Putative sterigmatocystin biosynthesis fatty acid synthase| beta subunit Length = 1914 Score = 28.9 bits (63), Expect = 8.7 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 10/87 (11%) Frame = +3 Query: 9 ETQILKTQQPTYMTAISIV----------LRKRNNSKYIPLYCRTHTQFR*YNDQTQGGH 158 + Q L P + + +S V LR R N IP+YC+ + R N Q G H Sbjct: 283 DVQFLPVSAPYHSSLLSSVELRVTDAIGGLRLRGNDLAIPVYCQANGSLR--NLQDYGTH 340 Query: 159 SSCPTLFCAGKIGGQIIITGETRTWPA 239 TL + +T E WPA Sbjct: 341 DILLTLIQS--------VTVERVNWPA 359
>DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA| Length = 533 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 25 RPNNQHT*PQYLLFLGREITQSTYLSIAELILSLDSTTIKH 147 RP N Q ++L +E+TQ + I EL D TT+ H Sbjct: 465 RPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLH 505
>POU1_XENLA (P31363) Transcription factor POU1 (XLPOU1) (Homeotic protein| NRL-22/NRL-34) Length = 356 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Frame = +1 Query: 292 PPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKH--HEEPNCP 417 P SS H L DDP P QH G H H + + P Sbjct: 135 PQASSLHHSMRDPLHDDPGVHDTQVDSPPQHLGHHQDHSDEDAP 178
>VAV_DROME (Q9NHV9) Protein vav (DroVav)| Length = 793 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +1 Query: 292 PPCSSYEHKRESHLLDDPRTQSQHCPRP*QHQGKHHEEPNCPLREVCRPNPHR 450 P C S +HK E + D P T +HC + +G+ H+ C +VC+ + H+ Sbjct: 546 PGCQSTDHKMEIYTFDAP-TTCRHCSK--FLKGRIHQGYRC---KVCQISVHK 592
>DNAA_RALSO (Q8XTV4) Chromosomal replication initiator protein dnaA| Length = 522 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 25 RPNNQHT*PQYLLFLGREITQSTYLSIAELILSLDSTTIKH 147 RP N Q ++L +E+TQ + I EL D TT+ H Sbjct: 454 RPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLH 494 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,216,638 Number of Sequences: 219361 Number of extensions: 1875123 Number of successful extensions: 5899 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5871 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
