Clone Name | rbart40b05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_475643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 777 Score = 250 bits (126), Expect = 4e-63 Identities = 171/186 (91%) Strand = Plus / Minus Query: 357 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 416 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 777 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 718 Query: 417 cttcgctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcaccc 476 |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 717 cttcgccggagtgatcttgacgcacttgccgtggtaccacctctcgcacacgtcgcagcc 658 Query: 477 gatccagaattcctcggcgctgtatatgccgccgcatgtcccacatagggtctcgctgtg 536 ||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 657 gatccagaactcgtcggcgctgtatatcccaccgcaagtcccgcatagggtctcactgtg 598 Query: 537 gtcgcc 542 |||||| Sbjct: 597 gtcgcc 592
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 250 bits (126), Expect = 4e-63 Identities = 171/186 (91%) Strand = Plus / Plus Query: 357 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 416 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 60088 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 60147 Query: 417 cttcgctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcaccc 476 |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 60148 cttcgccggagtgatcttgacgcacttgccgtggtaccacctctcgcacacgtcgcagcc 60207 Query: 477 gatccagaattcctcggcgctgtatatgccgccgcatgtcccacatagggtctcgctgtg 536 ||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 60208 gatccagaactcgtcggcgctgtatatcccaccgcaagtcccgcatagggtctcactgtg 60267 Query: 537 gtcgcc 542 |||||| Sbjct: 60268 gtcgcc 60273
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 250 bits (126), Expect = 4e-63 Identities = 171/186 (91%) Strand = Plus / Plus Query: 357 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 416 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 3637741 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 3637800 Query: 417 cttcgctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcaccc 476 |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 3637801 cttcgccggagtgatcttgacgcacttgccgtggtaccacctctcgcacacgtcgcagcc 3637860 Query: 477 gatccagaattcctcggcgctgtatatgccgccgcatgtcccacatagggtctcgctgtg 536 ||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 3637861 gatccagaactcgtcggcgctgtatatcccaccgcaagtcccgcatagggtctcactgtg 3637920 Query: 537 gtcgcc 542 |||||| Sbjct: 3637921 gtcgcc 3637926 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 430 atcttcacgcacttgccatggtaccacctctcgca 464 |||||||||||||| ||||||||||||| |||||| Sbjct: 20402459 atcttcacgcactttccatggtaccaccgctcgca 20402425
>dbj|AK071548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104P18, full insert sequence Length = 1109 Score = 250 bits (126), Expect = 4e-63 Identities = 171/186 (91%) Strand = Plus / Minus Query: 357 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 416 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 882 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 823 Query: 417 cttcgctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcaccc 476 |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 822 cttcgccggagtgatcttgacgcacttgccgtggtaccacctctcgcacacgtcgcagcc 763 Query: 477 gatccagaattcctcggcgctgtatatgccgccgcatgtcccacatagggtctcgctgtg 536 ||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 762 gatccagaactcgtcggcgctgtatatcccaccgcaagtcccgcatagggtctcactgtg 703 Query: 537 gtcgcc 542 |||||| Sbjct: 702 gtcgcc 697
>dbj|AK061479.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G07, full insert sequence Length = 1172 Score = 250 bits (126), Expect = 4e-63 Identities = 171/186 (91%) Strand = Plus / Minus Query: 357 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 416 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 801 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 742 Query: 417 cttcgctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcaccc 476 |||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct: 741 cttcgccggagtgatcttgacgcacttgccgtggtaccacctctcgcacacgtcgcagcc 682 Query: 477 gatccagaattcctcggcgctgtatatgccgccgcatgtcccacatagggtctcgctgtg 536 ||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct: 681 gatccagaactcgtcggcgctgtatatcccaccgcaagtcccgcatagggtctcactgtg 622 Query: 537 gtcgcc 542 |||||| Sbjct: 621 gtcgcc 616
>gb|AY111838.1| Zea mays CL29063_1 mRNA sequence Length = 871 Score = 202 bits (102), Expect = 9e-49 Identities = 156/174 (89%) Strand = Plus / Plus Query: 381 gcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgca 440 |||||||||||| |||||||||||||||||||||||||| || || || ||||||||||| Sbjct: 350 gcagcttgggcacttgtactgctttatgctctccgcctttgcaggtgtgatcttcacgca 409 Query: 441 cttgccatggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgctgta 500 |||||||||||||||| |||||||||||||||||||||||||||| || || |||||||| Sbjct: 410 cttgccatggtaccacttctcgcacacgtcgcacccgatccagaactcatcagcgctgta 469 Query: 501 tatgccgccgcatgtcccacatagggtctcgctgtggtcgccgtcatcttcatc 554 ||| || || |||||||| || | ||| |||||||||| || |||||||||||| Sbjct: 470 tattccaccacatgtcccgcacaaggtttcgctgtggttgctgtcatcttcatc 523
>gb|BT009102.1| Triticum aestivum clone wkm2n.pk004.d7:fis, full insert mRNA sequence Length = 1221 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| || |||||||| Sbjct: 889 gggcacttgtactgcttgatgtgctccgccttggccggcgtgatcttgacacacttgccg 830 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| ||||| ||||||||| |||||| ||||||||||| Sbjct: 829 tggaaccacttctcgcacatgtcgcagccgatccagaa 792
>ref|XM_479105.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1168 Score = 73.8 bits (37), Expect = 6e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| ||||||||||| Sbjct: 790 gggcacttgtactgcttgatgtgctccgccttggccggggtgatcttgacgcacttgccg 731 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgc 496 ||| ||||| ||||||| | |||||| | ||||||||| || ||||||| Sbjct: 730 tggaaccacttctcgcagatgtcgcagcagatccagaactcgtcggcgc 682
>gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence Length = 129838 Score = 73.8 bits (37), Expect = 6e-10 Identities = 91/109 (83%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| ||||||||||| Sbjct: 125337 gggcacttgtactgcttgatgtgctccgccttggccggggtgatcttgacgcacttgccg 125396 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgc 496 ||| ||||| ||||||| | |||||| | ||||||||| || ||||||| Sbjct: 125397 tggaaccacttctcgcagatgtcgcagcagatccagaactcgtcggcgc 125445
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 6e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| ||||||||||| Sbjct: 24963816 gggcacttgtactgcttgatgtgctccgccttggccggggtgatcttgacgcacttgccg 24963757 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgc 496 ||| ||||| ||||||| | |||||| | ||||||||| || ||||||| Sbjct: 24963756 tggaaccacttctcgcagatgtcgcagcagatccagaactcgtcggcgc 24963708 Score = 65.9 bits (33), Expect = 1e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||||||| ||||| |||||||| |||||| | ||||| ||||| Sbjct: 7447113 gggcacttgtagtgctttatgtgttccgctttcgctggtgttatcctaacgcatttgccg 7447172 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgctgtatatgccg 507 ||| |||||| |||||| | ||||||||| ||||| || || | |||| |||| ||| Sbjct: 7447173 tggaaccaccgctcgcaaatgtcgcacccaatccaaaactcgttggcgttgtagcggcca 7447232 Query: 508 ccgcatgtcccacatagggtctcgctgtg 536 ||||| || ||||||||||| || ||||| Sbjct: 7447233 ccgcaggttccacatagggtttcactgtg 7447261
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 73.8 bits (37), Expect = 6e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| ||||||||||| Sbjct: 147448 gggcacttgtactgcttgatgtgctccgccttggccggggtgatcttgacgcacttgccg 147389 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgc 496 ||| ||||| ||||||| | |||||| | ||||||||| || ||||||| Sbjct: 147388 tggaaccacttctcgcagatgtcgcagcagatccagaactcgtcggcgc 147340
>dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0018L13 Length = 131155 Score = 73.8 bits (37), Expect = 6e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| ||||||||||| Sbjct: 4496 gggcacttgtactgcttgatgtgctccgccttggccggggtgatcttgacgcacttgccg 4437 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgc 496 ||| ||||| ||||||| | |||||| | ||||||||| || ||||||| Sbjct: 4436 tggaaccacttctcgcagatgtcgcagcagatccagaactcgtcggcgc 4388
>dbj|AK109447.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H11, full insert sequence Length = 1220 Score = 73.8 bits (37), Expect = 6e-10 Identities = 91/109 (83%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||||||||| || || || ||||| ||||||||||| Sbjct: 842 gggcacttgtactgcttgatgtgctccgccttggccggggtgatcttgacgcacttgccg 783 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgc 496 ||| ||||| ||||||| | |||||| | ||||||||| || ||||||| Sbjct: 782 tggaaccacttctcgcagatgtcgcagcagatccagaactcgtcggcgc 734
>ref|NM_120643.1| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT5G05610 transcript variant AT5G05610.1 mRNA, complete cds Length = 1228 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 857 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 798 Query: 448 tggtacca 455 |||||||| Sbjct: 797 tggtacca 790
>ref|NM_180444.1| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT5G05610 transcript variant AT5G05610.2 mRNA, complete cds Length = 1184 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 857 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 798 Query: 448 tggtacca 455 |||||||| Sbjct: 797 tggtacca 790
>ref|XM_466276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1196 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 855 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 796 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 795 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 748
>ref|XM_506831.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1712_E04.22 mRNA Length = 1213 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 867 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 808 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 807 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 760
>gb|BT024471.1| Arabidopsis thaliana At5g05610 mRNA, complete cds Length = 726 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 695 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 636 Query: 448 tggtacca 455 |||||||| Sbjct: 635 tggtacca 628
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 21436243 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 21436184 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 21436183 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 21436136
>gb|AY084560.1| Arabidopsis thaliana clone 111750 mRNA, complete sequence Length = 1228 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 857 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 798 Query: 448 tggtacca 455 |||||||| Sbjct: 797 tggtacca 790
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 31170 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 31111 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 31110 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 31063
>dbj|AK176806.1| Arabidopsis thaliana mRNA for nucleic acid binding protein-like, complete cds, clone: RAFL25-35-H08 Length = 1068 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 843 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 784 Query: 448 tggtacca 455 |||||||| Sbjct: 783 tggtacca 776
>dbj|AK176462.1| Arabidopsis thaliana mRNA for nucleic acid binding protein-like, complete cds, clone: RAFL24-25-C05 Length = 1120 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 830 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 771 Query: 448 tggtacca 455 |||||||| Sbjct: 770 tggtacca 763
>dbj|AP004144.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1712_E04 Length = 110098 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 96196 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 96137 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 96136 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 96089
>dbj|AB005241.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOP10 Length = 57892 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||||||||| ||||| |||||||| || || ||||| ||||||||||| ||||| ||| Sbjct: 55977 gggcatttgtattgcttgatgctctctgctttggctggtgttatcttcacacacttccca 56036 Query: 448 tggtacca 455 |||||||| Sbjct: 56037 tggtacca 56044
>dbj|AK105951.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D01, full insert sequence Length = 1196 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 855 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 796 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 795 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 748
>dbj|AK073526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046L10, full insert sequence Length = 1213 Score = 71.9 bits (36), Expect = 2e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 378 gctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcac 437 |||||||| ||||| ||||||||||| ||| ||| |||||||| || || ||| || Sbjct: 867 gctgcagccagggcacttgtactgcttgatgtgctctgccttcgcaggggtgatccgaac 808 Query: 438 gcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||||||| ||||| ||||||| |||||||| | ||||||||| Sbjct: 807 gcacttgccatggaaccacttctcgcagacgtcgcagcagatccagaa 760
>ref|NM_186688.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1155 Score = 65.9 bits (33), Expect = 1e-07 Identities = 120/149 (80%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||||||| ||||| |||||||| |||||| | ||||| ||||| Sbjct: 773 gggcacttgtagtgctttatgtgttccgctttcgctggtgttatcctaacgcatttgccg 714 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgctgtatatgccg 507 ||| |||||| |||||| | ||||||||| ||||| || || | |||| |||| ||| Sbjct: 713 tggaaccaccgctcgcaaatgtcgcacccaatccaaaactcgttggcgttgtagcggcca 654 Query: 508 ccgcatgtcccacatagggtctcgctgtg 536 ||||| || ||||||||||| || ||||| Sbjct: 653 ccgcaggttccacatagggtttcactgtg 625
>dbj|AK073637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048B22, full insert sequence Length = 1155 Score = 65.9 bits (33), Expect = 1e-07 Identities = 120/149 (80%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||||||| ||||| |||||||| |||||| | ||||| ||||| Sbjct: 773 gggcacttgtagtgctttatgtgttccgctttcgctggtgttatcctaacgcatttgccg 714 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgctgtatatgccg 507 ||| |||||| |||||| | ||||||||| ||||| || || | |||| |||| ||| Sbjct: 713 tggaaccaccgctcgcaaatgtcgcacccaatccaaaactcgttggcgttgtagcggcca 654 Query: 508 ccgcatgtcccacatagggtctcgctgtg 536 ||||| || ||||||||||| || ||||| Sbjct: 653 ccgcaggttccacatagggtttcactgtg 625
>dbj|AK063803.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F12, full insert sequence Length = 591 Score = 65.9 bits (33), Expect = 1e-07 Identities = 120/149 (80%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||||||| ||||| |||||||| |||||| | ||||| ||||| Sbjct: 209 gggcacttgtagtgctttatgtgttccgctttcgctggtgttatcctaacgcatttgccg 150 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaattcctcggcgctgtatatgccg 507 ||| |||||| |||||| | ||||||||| ||||| || || | |||| |||| ||| Sbjct: 149 tggaaccaccgctcgcaaatgtcgcacccaatccaaaactcgttggcgttgtagcggcca 90 Query: 508 ccgcatgtcccacatagggtctcgctgtg 536 ||||| || ||||||||||| || ||||| Sbjct: 89 ccgcaggttccacatagggtttcactgtg 61
>ref|NM_111955.1| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT3G11200 transcript variant AT3G11200.1 mRNA, complete cds Length = 1255 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 880 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 821 Query: 448 tggtacca 455 |||||||| Sbjct: 820 tggtacca 813
>ref|NM_202551.1| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT3G11200 transcript variant AT3G11200.2 mRNA, complete cds Length = 1404 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 1028 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 969 Query: 448 tggtacca 455 |||||||| Sbjct: 968 tggtacca 961
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 7696 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 7637 Query: 448 tggtacca 455 |||||||| Sbjct: 7636 tggtacca 7629
>gb|AY143832.1| Arabidopsis thaliana At3g11200/F11B9.12 mRNA, complete cds Length = 741 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 710 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 651 Query: 448 tggtacca 455 |||||||| Sbjct: 650 tggtacca 643
>gb|AY058833.1| Arabidopsis thaliana At3g11200/F11B9.12 mRNA, complete cds Length = 1134 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 846 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 787 Query: 448 tggtacca 455 |||||||| Sbjct: 786 tggtacca 779
>emb|BX823096.1|CNS0A79Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB8ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 641 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 352 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 293 Query: 448 tggtacca 455 |||||||| Sbjct: 292 tggtacca 285
>emb|BX822406.1|CNS0A7CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1404 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 1028 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 969 Query: 448 tggtacca 455 |||||||| Sbjct: 968 tggtacca 961
>emb|BX826146.1|CNS0A6H5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL87ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1017 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 806 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 747 Query: 448 tggtacca 455 |||||||| Sbjct: 746 tggtacca 739
>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete sequence Length = 103517 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 45584 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 45643 Query: 448 tggtacca 455 |||||||| Sbjct: 45644 tggtacca 45651
>gb|AY085138.1| Arabidopsis thaliana clone 13297 mRNA, complete sequence Length = 1255 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 |||||||| |||||||| |||||||| || || || ||||||||||| ||||| || ||| Sbjct: 880 gggcatttatactgcttgatgctctctgctttagccggagttatcttgacgcattttcca 821 Query: 448 tggtacca 455 |||||||| Sbjct: 820 tggtacca 813
>ref|XM_470117.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1157 Score = 60.0 bits (30), Expect = 8e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||| ||| ||||||||| || || |||||| | ||||| ||||| Sbjct: 802 gggcacttgtagtgcttgatgtgctccgccttagccggggttatcctgacgcatttgccg 743 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| |||||| ||| || | |||||||||||||||||| Sbjct: 742 tggaaccaccgctcacagatgtcgcacccgatccagaa 705
>gb|BT017746.1| Zea mays clone EL01N0449H05.c mRNA sequence Length = 1198 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 372 cttggagctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttat 431 ||||| ||||||||| || || ||||||||||| ||| ||||||||| || || || || Sbjct: 877 cttggtgctgcagctgggacacttgtactgcttgatgtgctccgccttggcaggggtgat 818 Query: 432 cttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 || |||||||||||| ||||| |||||||||| ||||| | ||||||||| Sbjct: 817 gcggacacacttgccatggaaccacttctcgcacacatcgcagcagatccagaa 764
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 8e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||| ||| ||||||||| || || |||||| | ||||| ||||| Sbjct: 34039651 gggcacttgtagtgcttgatgtgctccgccttagccggggttatcctgacgcatttgccg 34039710 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| |||||| ||| || | |||||||||||||||||| Sbjct: 34039711 tggaaccaccgctcacagatgtcgcacccgatccagaa 34039748
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 8e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||| ||| ||||||||| || || |||||| | ||||| ||||| Sbjct: 34130123 gggcacttgtagtgcttgatgtgctccgccttagccggggttatcctgacgcatttgccg 34130182 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| |||||| ||| || | |||||||||||||||||| Sbjct: 34130183 tggaaccaccgctcacagatgtcgcacccgatccagaa 34130220
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 60.0 bits (30), Expect = 8e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||| ||| ||||||||| || || |||||| | ||||| ||||| Sbjct: 3463 gggcacttgtagtgcttgatgtgctccgccttagccggggttatcctgacgcatttgccg 3522 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| |||||| ||| || | |||||||||||||||||| Sbjct: 3523 tggaaccaccgctcacagatgtcgcacccgatccagaa 3560
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 60.0 bits (30), Expect = 8e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||| ||| ||||||||| || || |||||| | ||||| ||||| Sbjct: 18040 gggcacttgtagtgcttgatgtgctccgccttagccggggttatcctgacgcatttgccg 17981 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| |||||| ||| || | |||||||||||||||||| Sbjct: 17980 tggaaccaccgctcacagatgtcgcacccgatccagaa 17943
>dbj|AK103363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126N11, full insert sequence Length = 1202 Score = 60.0 bits (30), Expect = 8e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||| ||||| ||| ||||||||| || || |||||| | ||||| ||||| Sbjct: 812 gggcacttgtagtgcttgatgtgctccgccttagccggggttatcctgacgcatttgccg 753 Query: 448 tggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||| |||||| ||| || | |||||||||||||||||| Sbjct: 752 tggaaccaccgctcacagatgtcgcacccgatccagaa 715
>gb|AY104993.1| Zea mays PCO092577 mRNA sequence Length = 1146 Score = 60.0 bits (30), Expect = 8e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 372 cttggagctgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttat 431 ||||| ||||||||| || || ||||||||||| ||| ||||||||| || || || || Sbjct: 853 cttggtgctgcagctgggacacttgtactgcttgatgtgctccgccttggcaggggtgat 794 Query: 432 cttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 || |||||||||||| ||||| |||||||||| ||||| | ||||||||| Sbjct: 793 gcggacacacttgccatggaaccacttctcgcacacatcgcagcagatccagaa 740
>ref|NM_114147.3| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT3G42790 mRNA, complete cds Length = 1072 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 838 gctggagtgatcttcacacacttgccatggaaccacttctcacaaaggtcacagcagatc 779 Query: 481 cagaattc 488 |||||||| Sbjct: 778 cagaattc 771
>gb|AY114574.1| Arabidopsis thaliana nucleic acid binding protein-like (At3g42790) mRNA, complete cds Length = 865 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 689 gctggagtgatcttcacacacttgccatggaaccacttctcacaaaggtcacagcagatc 630 Query: 481 cagaattc 488 |||||||| Sbjct: 629 cagaattc 622
>gb|DQ103593.1| Olimarabidopsis pumila clone BAC 44L14, complete sequence Length = 118342 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| |||| |||| || | |||||| | |||| Sbjct: 74549 gctggagtgatcttcacacacttgccatggaaccatttctcacaaaggtcgcagcagatc 74608 Query: 481 cagaattc 488 |||||||| Sbjct: 74609 cagaattc 74616
>gb|AY062851.1| Arabidopsis thaliana nucleic acid binding protein-like (T21C14.1) mRNA, complete cds Length = 1060 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 828 gctggagtgatcttcacacacttgccatggaaccacttctcacaaaggtcacagcagatc 769 Query: 481 cagaattc 488 |||||||| Sbjct: 768 cagaattc 761
>emb|BX823497.1|CNS0A6J1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS44ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 979 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 769 gctggagtgatcttcacacacttgccatggaaccacttctcacaaaggtcacagcagatc 710 Query: 481 cagaattc 488 |||||||| Sbjct: 709 cagaattc 702
>emb|BX823251.1|CNS0A6HZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZE07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 305 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 71 gctggagtgatcttcacacacttgccatggaaccacttctcacaaaggtcacagcagatc 12 Query: 481 cagaattc 488 |||||||| Sbjct: 11 cagaattc 4
>emb|AL138639.1|ATT21C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T21C14 Length = 79677 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| |||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 9669 gctggagtgatcttcacacacttgccatggaaccacttctcacaaaggtcacagcagatc 9728 Query: 481 cagaattc 488 |||||||| Sbjct: 9729 cagaattc 9736
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 430 atcttcacgcacttgccatggtaccacctctcgca 464 |||||||||||||| ||||||||||||| |||||| Sbjct: 74204 atcttcacgcactttccatggtaccaccgctcgca 74170
>dbj|AK121400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M22, full insert sequence Length = 1114 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 430 atcttcacgcacttgccatggtaccacctctcgca 464 |||||||||||||| ||||||||||||| |||||| Sbjct: 828 atcttcacgcactttccatggtaccaccgctcgca 794
>dbj|AK059311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G08, full insert sequence Length = 2105 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 430 atcttcacgcacttgccatggtaccacctctcgca 464 |||||||||||||| ||||||||||||| |||||| Sbjct: 1746 atcttcacgcactttccatggtaccaccgctcgca 1712
>gb|DQ160134.1| Taraxacum officinale TO114-1 (To114-1) mRNA, partial cds Length = 201 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 433 ttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatcca 482 ||||| ||||| ||||||||||||||||| || | ||| ||||||||||| Sbjct: 172 ttcacacactttccatggtaccacctctcacatatgtcacacccgatcca 123
>gb|BT008959.1| Triticum aestivum clone wdk1c.pk012.i11:fis, full insert mRNA sequence Length = 1300 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Minus Query: 430 atcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||| ||||||||||| ||||||||| ||||||| |||||| | ||||||||| Sbjct: 807 atcttgacgcacttgccgtggtaccacttctcgcagttgtcgcagcagatccagaa 752
>emb|BX824888.1|CNS0A6WN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZA12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1038 Score = 48.1 bits (24), Expect = 0.032 Identities = 57/68 (83%) Strand = Plus / Minus Query: 421 gctggagttatcttcacgcacttgccatggtaccacctctcgcacacgtcgcacccgatc 480 |||||||| |||||||| ||||||||||| ||||| |||| || | ||| || | |||| Sbjct: 837 gctggagtgatcttcacagacttgccatggaaccacttctcacaaaggtcacagcagatc 778 Query: 481 cagaattc 488 |||||||| Sbjct: 777 cagaattc 770
>gb|AY110004.1| Zea mays CL16185_1 mRNA sequence Length = 1230 Score = 46.1 bits (23), Expect = 0.13 Identities = 77/95 (81%) Strand = Plus / Plus Query: 388 gggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgcacttgcca 447 ||||| ||||||||||| ||| ||| ||||| || | || ||||| ||||||||||| Sbjct: 198 gggcacttgtactgcttgatgtgctcggccttggccgccgtgatcttgacgcacttgccg 257 Query: 448 tggtaccacctctcgcacacgtcgcacccgatcca 482 ||| ||||| ||||||| | |||||| | |||||| Sbjct: 258 tggaaccacttctcgcagaggtcgcagcagatcca 292
>gb|AY104096.1| Zea mays PCO134301 mRNA sequence Length = 674 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Minus Query: 435 cacgcacttgccatggtaccacctctcgcacacgtcgcacccgatccagaa 485 ||||||||| || ||| |||||| |||||| | |||||| ||||||||||| Sbjct: 225 cacgcacttcccgtggaaccaccgctcgcagatgtcgcagccgatccagaa 175
>gb|AY553842.1| Lycopersicon esculentum nucleic acid-binding protein mRNA, complete cds Length = 1017 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Minus Query: 415 gccttcgctggagttatcttcacgcacttgccatggtaccac 456 ||||| || |||||||| ||||| ||||||||||| |||||| Sbjct: 674 gcctttgcaggagttattttcacacacttgccatgataccac 633
>gb|AY248742.1| Lycopersicon esculentum omega-3 fatty acid desaturase gene, complete cds; nuclear gene for chloroplast product Length = 43170 Score = 44.1 bits (22), Expect = 0.50 Identities = 37/42 (88%) Strand = Plus / Plus Query: 415 gccttcgctggagttatcttcacgcacttgccatggtaccac 456 ||||| || |||||||| ||||| ||||||||||| |||||| Sbjct: 34593 gcctttgcaggagttattttcacacacttgccatgataccac 34634
>dbj|AP003782.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-589G12, complete sequence Length = 180303 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 taataatacatatattaacata 30 |||||||||||||||||||||| Sbjct: 102375 taataatacatatattaacata 102396
>ref|NM_101318.2| Arabidopsis thaliana DNA binding / protein binding / zinc ion binding AT1G14510 mRNA, complete cds Length = 1314 Score = 42.1 bits (21), Expect = 2.0 Identities = 69/85 (81%) Strand = Plus / Minus Query: 380 tgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgc 439 |||| |||||||||||||| || || || ||| ||||| ||||| || |||||||||| Sbjct: 1004 tgcaacttgggcatttgtaatgtttgatatgctcagcctttgctggtgtgatcttcacgc 945 Query: 440 acttgccatggtaccacctctcgca 464 | || |||||| |||| ||||||| Sbjct: 944 atttcccatggaaccatttctcgca 920
>gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, complete sequence Length = 216754 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 aataatacatatattaacata 30 ||||||||||||||||||||| Sbjct: 92672 aataatacatatattaacata 92652
>gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, complete sequence Length = 151556 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 aataatacatatattaacata 30 ||||||||||||||||||||| Sbjct: 70380 aataatacatatattaacata 70360
>gb|U97190.1| Caenorhabditis elegans cosmid B0025, complete sequence Length = 17370 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 gttacacatattttcatcatt 108 ||||||||||||||||||||| Sbjct: 14525 gttacacatattttcatcatt 14505
>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence Length = 190666 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 atcattctactatcccttccc 123 ||||||||||||||||||||| Sbjct: 177020 atcattctactatcccttccc 177000
>gb|BT006199.1| Arabidopsis thaliana At1g14510 mRNA, complete cds Length = 759 Score = 42.1 bits (21), Expect = 2.0 Identities = 69/85 (81%) Strand = Plus / Minus Query: 380 tgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgc 439 |||| |||||||||||||| || || || ||| ||||| ||||| || |||||||||| Sbjct: 733 tgcaacttgggcatttgtaatgtttgatatgctcagcctttgctggtgtgatcttcacgc 674 Query: 440 acttgccatggtaccacctctcgca 464 | || |||||| |||| ||||||| Sbjct: 673 atttcccatggaaccatttctcgca 649
>emb|BX818105.1|CNS0ACHN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZB08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1019 Score = 42.1 bits (21), Expect = 2.0 Identities = 69/85 (81%) Strand = Plus / Minus Query: 380 tgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgc 439 |||| |||||||||||||| || || || ||| ||||| ||||| || |||||||||| Sbjct: 782 tgcaacttgggcatttgtaatgtttgatatgctcagcctttgctggtgtgatcttcacgc 723 Query: 440 acttgccatggtaccacctctcgca 464 | || |||||| |||| ||||||| Sbjct: 722 atttcccatggaaccatttctcgca 698
>gb|AY088087.1| Arabidopsis thaliana clone 41104 mRNA, complete sequence Length = 1280 Score = 42.1 bits (21), Expect = 2.0 Identities = 69/85 (81%) Strand = Plus / Minus Query: 380 tgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgc 439 |||| |||||||||||||| || || || ||| ||||| ||||| || |||||||||| Sbjct: 1004 tgcaacttgggcatttgtaatgtttgatatgctcagcctttgctggtgtgatcttcacgc 945 Query: 440 acttgccatggtaccacctctcgca 464 | || |||||| |||| ||||||| Sbjct: 944 atttcccatggaaccatttctcgca 920
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111686 Score = 42.1 bits (21), Expect = 2.0 Identities = 69/85 (81%) Strand = Plus / Plus Query: 380 tgcagcttgggcatttgtactgctttatgctctccgccttcgctggagttatcttcacgc 439 |||| |||||||||||||| || || || ||| ||||| ||||| || |||||||||| Sbjct: 93276 tgcaacttgggcatttgtaatgtttgatatgctcagcctttgctggtgtgatcttcacgc 93335 Query: 440 acttgccatggtaccacctctcgca 464 | || |||||| |||| ||||||| Sbjct: 93336 atttcccatggaaccatttctcgca 93360
>gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, complete sequence Length = 168235 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 atcattctactatcccttccc 123 ||||||||||||||||||||| Sbjct: 127619 atcattctactatcccttccc 127639
>emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in linkage group 15, complete sequence Length = 107420 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 acatagataaaatagtataaataaa 50 ||||||||| ||||||||||||||| Sbjct: 4565 acatagatacaatagtataaataaa 4541
>emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chromosome X, complete sequence Length = 183256 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 aacatacacctttgactcctc 147 ||||||||||||||||||||| Sbjct: 75695 aacatacacctttgactcctc 75675
>emb|BX004827.18| Human DNA sequence from clone RP13-391G2 on chromosome X Contains the SHOX gene for short stature homeobox and seven CpG islands, complete sequence Length = 119555 Score = 40.1 bits (20), Expect = 7.8 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 18 atatattaacatagataaaata-gtataaata 48 ||||||||||||| |||||||| ||||||||| Sbjct: 86469 atatattaacatatataaaatatgtataaata 86500
>emb|AL953889.9| Human DNA sequence from clone RP11-7G23 on chromosome 9 Contains six novel pseudogenes, the FAM27A gene for family with sequence similarity 27, member A, a novel gene and five CpG islands, complete sequence Length = 160730 Score = 40.1 bits (20), Expect = 7.8 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 9 taataatacatatattaacatagataaaatagtata 44 |||||||||||||| ||||||| |||||||| |||| Sbjct: 24650 taataatacatata-taacatatataaaatactata 24616
>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six novel pseudogenes, the FAM27B gene for family with sequence similarity 27, member B, a pseudogene similar to part of ribosomal protein L10 (RPL10) and four CpG islands, complete sequence Length = 194246 Score = 40.1 bits (20), Expect = 7.8 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 9 taataatacatatattaacatagataaaatagtata 44 |||||||||||||| ||||||| |||||||| |||| Sbjct: 39735 taataatacatata-taacatatataaaatactata 39701
>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the FAM27C gene for family with sequence similarity 27, member C, three novel genes, five novel pseudogenes and six CpG islands, complete sequence Length = 202081 Score = 40.1 bits (20), Expect = 7.8 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 9 taataatacatatattaacatagataaaatagtata 44 |||||||||||||| ||||||| |||||||| |||| Sbjct: 104261 taataatacatata-taacatatataaaatactata 104227
>emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chromosome 13 Contains the 3' end of the Slc17a1 gene for solute carrier family 17 vesicular glutamate transporter) member 1, the gene for a novel solute carrier family 17 (Slc17a) member, a U1 small nuclear ribonucleoprotein 1C (Snrp1c) pseudogene, a H2B histone family (H2b) pseudogene, the gene for a novel H2A histone family (H2a) member, a novel gene, the gene for the ortholog of human secretagogin, EF-hand calcium binding protein SCGN and the 3' end of a novel gene, complete sequence Length = 183698 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 agcattagcatcatcaccat 223 |||||||||||||||||||| Sbjct: 69494 agcattagcatcatcaccat 69475
>emb|AL845351.6| Zebrafish DNA sequence from clone DKEYP-44A9 in linkage group 20, complete sequence Length = 160701 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 atgaaaagttacacatattt 100 |||||||||||||||||||| Sbjct: 152801 atgaaaagttacacatattt 152782
>emb|BX571727.8| Zebrafish DNA sequence from clone DKEY-14I22 in linkage group 5, complete sequence Length = 102670 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 atagataaaatagtataaat 47 |||||||||||||||||||| Sbjct: 87396 atagataaaatagtataaat 87415
>gb|AC025465.5| Homo sapiens chromosome 5 clone CTD-2308B18, complete sequence Length = 142148 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 actaataatacatatattaa 26 |||||||||||||||||||| Sbjct: 16307 actaataatacatatattaa 16326
>gb|AC105766.2| Homo sapiens chromosome 1 clone RP4-573J3, complete sequence Length = 91768 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atacatatattaacatagat 33 |||||||||||||||||||| Sbjct: 23134 atacatatattaacatagat 23115
>ref|XM_631618.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0219346), partial mRNA Length = 6072 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 cgtcatcttcatcataacct 561 |||||||||||||||||||| Sbjct: 3841 cgtcatcttcatcataacct 3822
>gb|AC156803.2| Mus musculus BAC clone RP23-6E6 from chromosome 13, complete sequence Length = 226345 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cagactaataatacatatat 23 |||||||||||||||||||| Sbjct: 11568 cagactaataatacatatat 11587
>gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosome 13, complete sequence Length = 152221 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cagactaataatacatatat 23 |||||||||||||||||||| Sbjct: 109555 cagactaataatacatatat 109574
>gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181158 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 attaacatagataaaatagt 41 |||||||||||||||||||| Sbjct: 54650 attaacatagataaaatagt 54669
>gb|AY675102.1| Ostreococcus tauri retinoblastoma protein (Rb) gene, complete cds Length = 2964 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 cgcacacgtcgcacccgatc 480 |||||||||||||||||||| Sbjct: 2191 cgcacacgtcgcacccgatc 2172
>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7, complete sequence Length = 168607 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 taaaatagtataaataaacc 52 |||||||||||||||||||| Sbjct: 83966 taaaatagtataaataaacc 83947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,872,846 Number of Sequences: 3902068 Number of extensions: 4872846 Number of successful extensions: 110958 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 110589 Number of HSP's gapped (non-prelim): 376 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)