ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predic... 232 9e-58
2dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 9e-58
3dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 9e-58
4dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 9e-58
5gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 226 6e-56
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 226 6e-56
7gb|AY107653.1| Zea mays PCO119349 mRNA sequence 157 4e-35
8dbj|AK068231.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
9dbj|AB190187.1| Arthrobacter globiformis cmmA, cmmB genes for 6-... 48 0.029
10ref|XM_418230.1| PREDICTED: Gallus gallus similar to hypothetica... 46 0.12
11emb|CR354313.1| Gallus gallus finished cDNA, clone ChEST70d4 46 0.12
12emb|BX931681.1| Gallus gallus finished cDNA, clone ChEST545h18 46 0.12
13emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on ch... 44 0.46
14dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.46
15gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.8
16gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.8
17emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chro... 42 1.8
18emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.8
19emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 42 1.8
20emb|AJ318463.1|HSA318463 Homo sapiens RPGR gene for retinitis pi... 42 1.8
21gb|AC104042.5| Homo sapiens chromosome 11, clone CTD-2119L1, com... 42 1.8
22dbj|AK076574.1| Mus musculus adult male testis cDNA, RIKEN full-... 42 1.8
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
24dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
25dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
26gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance... 42 1.8
27ref|XM_629929.1| Dictyostelium discoideum hypothetical protein (... 40 7.1
28ref|XM_475829.1| Oryza sativa (japonica cultivar-group), predic... 40 7.1
29gb|AC102143.10| Mus musculus chromosome 7, clone RP23-292M1, com... 40 7.1
30gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome ... 40 7.1
31ref|XM_322490.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.1
32ref|XM_952198.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.1
33gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
34ref|NM_020880.2| Homo sapiens zinc finger protein 530 (ZNF530), ... 40 7.1
35gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Canc... 40 7.1
36gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosom... 40 7.1
37gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, ... 40 7.1
38ref|XM_777705.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.1
39gb|BC060865.1| Homo sapiens zinc finger protein 530, mRNA (cDNA ... 40 7.1
40emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 7.1
41emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chro... 40 7.1
42dbj|AK096831.1| Homo sapiens cDNA FLJ39512 fis, clone PROST20189... 40 7.1
43ref|NM_135844.2| Drosophila melanogaster CG16886-RA (CG16886), mRNA 40 7.1
44gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, r... 40 7.1
45gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, r... 40 7.1
46gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ... 40 7.1
47gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete... 40 7.1
48gb|AC020594.6| Homo sapiens BAC clone RP11-322P19 from 2, comple... 40 7.1
49gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 40 7.1
50gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park C... 40 7.1
51ref|XM_343442.2| PREDICTED: Rattus norvegicus phosphoglucomutase... 40 7.1
52dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
53dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20,... 40 7.1
54gb|BT021214.1| Drosophila melanogaster RH73259 full insert cDNA 40 7.1
55emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.1
56gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50... 40 7.1
57dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 7.1
58emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7 40 7.1
59dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.1
60emb|AL832740.1|HSM804051 Homo sapiens mRNA; cDNA DKFZp686J1013 (... 40 7.1
61emb|AL954319.10| Human DNA sequence from clone RP11-5D4 on chrom... 40 7.1
62gb|AC003682.1|AC003682 Homo sapiens chromosome 19, overlapping c... 40 7.1
63gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, compl... 40 7.1
64emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-1... 40 7.1
65dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.1 
>ref|XM_475176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  232 bits (117), Expect = 9e-58
 Identities = 243/285 (85%)
 Strand = Plus / Minus

                                                                        
Query: 232  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 291
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1002 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 943

                                                                        
Query: 292  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 351
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 942  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 883

                                                                        
Query: 352  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 411
            ||||| |||||||||||||||||||| ||| ||||||||  |||||||||| ||||| ||
Sbjct: 882  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 823

                                                                        
Query: 412  cctcagtgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 471
             ||||  |||||||||| ||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 822  gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 763

                                                         
Query: 472  ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtg 516
             ||||||||||| | |||||||   || |||||||| ||||||||
Sbjct: 762  cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtg 718
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>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full
            insert sequence
          Length = 1254

 Score =  232 bits (117), Expect = 9e-58
 Identities = 243/285 (85%)
 Strand = Plus / Minus

                                                                        
Query: 232  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 291
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999

                                                                        
Query: 292  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 351
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 998  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939

                                                                        
Query: 352  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 411
            ||||| |||||||||||||||||||| ||| ||||||||  |||||||||| ||||| ||
Sbjct: 938  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 879

                                                                        
Query: 412  cctcagtgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 471
             ||||  |||||||||| ||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 878  gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 819

                                                         
Query: 472  ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtg 516
             ||||||||||| | |||||||   || |||||||| ||||||||
Sbjct: 818  cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtg 774
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>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full
            insert sequence
          Length = 1254

 Score =  232 bits (117), Expect = 9e-58
 Identities = 243/285 (85%)
 Strand = Plus / Minus

                                                                        
Query: 232  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 291
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1059 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 1000

                                                                        
Query: 292  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 351
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 999  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 940

                                                                        
Query: 352  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 411
            ||||| |||||||||||||||||||| ||| ||||||||  |||||||||| ||||| ||
Sbjct: 939  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 880

                                                                        
Query: 412  cctcagtgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 471
             ||||  |||||||||| ||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 879  gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 820

                                                         
Query: 472  ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtg 516
             ||||||||||| | |||||||   || |||||||| ||||||||
Sbjct: 819  cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtg 775
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>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full
            insert sequence
          Length = 1284

 Score =  232 bits (117), Expect = 9e-58
 Identities = 243/285 (85%)
 Strand = Plus / Minus

                                                                        
Query: 232  gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 291
            |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 1058 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 999

                                                                        
Query: 292  gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 351
            |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 998  gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 939

                                                                        
Query: 352  gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 411
            ||||| |||||||||||||||||||| ||| ||||||||  |||||||||| ||||| ||
Sbjct: 938  gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 879

                                                                        
Query: 412  cctcagtgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 471
             ||||  |||||||||| ||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 878  gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 819

                                                         
Query: 472  ggcctccctcagagcctcctcgcttccgagatcctcctcgatgtg 516
             ||||||||||| | |||||||   || |||||||| ||||||||
Sbjct: 818  cgcctccctcagtgtctcctcgtgcccaagatcctcttcgatgtg 774
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score =  226 bits (114), Expect = 6e-56
 Identities = 225/262 (85%)
 Strand = Plus / Plus

                                                                          
Query: 232    gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 291
              |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 143519 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 143578

                                                                          
Query: 292    gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 351
              |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 143579 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 143638

                                                                          
Query: 352    gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 411
              ||||| |||||||||||||||||||| ||| ||||||||  |||||||||| ||||| ||
Sbjct: 143639 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 143698

                                                                          
Query: 412    cctcagtgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 471
               ||||  |||||||||| ||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 143699 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 143758

                                    
Query: 472    ggcctccctcagagcctcctcg 493
               ||||||||||| | |||||||
Sbjct: 143759 cgcctccctcagtgtctcctcg 143780
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  226 bits (114), Expect = 6e-56
 Identities = 225/262 (85%)
 Strand = Plus / Plus

                                                                            
Query: 232      gccgacgatgagcgagacgagcgcgtccttgaagtggccgtgcgcgctgccggcgacggc 291
                |||| ||| |||||||| |||||||||  || ||| |||||||||  | |||||||||||
Sbjct: 18350307 gccggcgacgagcgagaggagcgcgtctctgtagtagccgtgcgccttcccggcgacggc 18350366

                                                                            
Query: 292      gtcctcgagcttggccccgaactgctcctggtaggccgccctgatgccgtccatgtccac 351
                |||||| ||| |  | ||||||||||| ||||||||||| | |||| |||||||||||||
Sbjct: 18350367 gtcctccagcctcccgccgaactgctcgtggtaggccgcgcggatggcgtccatgtccac 18350426

                                                                            
Query: 352      gtccgaccgcgtcaccgccacccgcgacagggcctccttgccgtggtggtccgcgccctc 411
                ||||| |||||||||||||||||||| ||| ||||||||  |||||||||| ||||| ||
Sbjct: 18350427 gtccgcccgcgtcaccgccacccgcgtcagcgcctccttcgcgtggtggtcggcgccgtc 18350486

                                                                            
Query: 412      cctcagtgccgccgccatcacctggctgaagtacctctccggcgtcgccaggcactgcac 471
                 ||||  |||||||||| ||||| ||||||||||||| ||||||||||||||||| || |
Sbjct: 18350487 gctcaccgccgccgccaccacctcgctgaagtacctcgccggcgtcgccaggcacagcgc 18350546

                                      
Query: 472      ggcctccctcagagcctcctcg 493
                 ||||||||||| | |||||||
Sbjct: 18350547 cgcctccctcagtgtctcctcg 18350568



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      gagaagacgaagacgaaccc 208
                ||||||||||||||||||||
Sbjct: 26915273 gagaagacgaagacgaaccc 26915254
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>gb|AY107653.1| Zea mays PCO119349 mRNA sequence
          Length = 587

 Score =  157 bits (79), Expect = 4e-35
 Identities = 166/195 (85%)
 Strand = Plus / Plus

                                                                       
Query: 251 agcgcgtccttgaagtggccgtgcgcgctgccggcgacggcgtcctcgagcttggccccg 310
           ||||||||| || |||| ||||||||  || | |||| | ||||||| ||||||||||||
Sbjct: 267 agcgcgtccctgtagtgtccgtgcgccttggccgcgatgacgtcctccagcttggccccg 326

                                                                       
Query: 311 aactgctcctggtaggccgccctgatgccgtccatgtccacgtccgaccgcgtcaccgcc 370
           |||||||  |||||||| || |||||| ||||||||||   |||||||||||||||||||
Sbjct: 327 aactgctggtggtaggcggctctgatgtcgtccatgtcgtggtccgaccgcgtcaccgcc 386

                                                                       
Query: 371 acccgcgacagggcctccttgccgtggtggtccgcgccctccctcagtgccgccgccatc 430
           |||| || |||||||||||| ||||||||||| ||||  |||||||| ||  || | |||
Sbjct: 387 accctcgtcagggcctccttcccgtggtggtcggcgctgtccctcagcgcgccctcaatc 446

                          
Query: 431 acctggctgaagtac 445
           |||||||||||||||
Sbjct: 447 acctggctgaagtac 461
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>dbj|AK068231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147O19, full
           insert sequence
          Length = 472

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                       
Query: 436 gctgaagtacctctccggcgtcgccaggcactgcacggcctccctcagagcctcctcgct 495
           ||||||||||||| ||||||||||||||||| || | ||||||||||| | |||||||  
Sbjct: 299 gctgaagtacctcgccggcgtcgccaggcacagcgccgcctccctcagtgtctcctcgtg 240

                                
Query: 496 tccgagatcctcctcgatgtg 516
            || |||||||| ||||||||
Sbjct: 239 cccaagatcctcttcgatgtg 219
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>dbj|AB190187.1| Arthrobacter globiformis cmmA, cmmB genes for
            6-alpha-maltosyltransferase, hypothetical protein,
            complete and partial cds
          Length = 4467

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 254  gcgtccttgaagtggccgtgcgcg 277
            ||||||||||||||||||||||||
Sbjct: 3512 gcgtccttgaagtggccgtgcgcg 3489
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>ref|XM_418230.1| PREDICTED: Gallus gallus similar to hypothetical gene MGC19595
           (LOC420112), mRNA
          Length = 2262

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 466 ctgcacggcctccctcagagcctcctc 492
           ||||||||||||||||| |||||||||
Sbjct: 462 ctgcacggcctccctcacagcctcctc 436
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>emb|CR354313.1| Gallus gallus finished cDNA, clone ChEST70d4
          Length = 2304

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 466 ctgcacggcctccctcagagcctcctc 492
           ||||||||||||||||| |||||||||
Sbjct: 462 ctgcacggcctccctcacagcctcctc 436
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>emb|BX931681.1| Gallus gallus finished cDNA, clone ChEST545h18
          Length = 873

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 466 ctgcacggcctccctcagagcctcctc 492
           ||||||||||||||||| |||||||||
Sbjct: 208 ctgcacggcctccctcacagcctcctc 182
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>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a
              Friedreich ataxia protein (Frda) pseudogene, complete
              sequence
          Length = 203970

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 52     cctcagctgcaaatgttacatt 73
              ||||||||||||||||||||||
Sbjct: 122286 cctcagctgcaaatgttacatt 122307
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 354    ccgaccgcgtcaccgccacccgcgac 379
              |||||||||||||| |||||||||||
Sbjct: 651605 ccgaccgcgtcacccccacccgcgac 651580
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 403    cgcgccctccctcagtgccgccgcc 427
              ||||||||||||| |||||||||||
Sbjct: 769014 cgcgccctccctctgtgccgccgcc 769038
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 403     cgcgccctccctcagtgccgccgcc 427
               ||||||||||||| |||||||||||
Sbjct: 1289113 cgcgccctccctctgtgccgccgcc 1289137
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>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3
             Contains the 5' end of the SRPX gene for a chromosome X
             sushi-repeat-containing protein, a novel gene, the RPGR
             gene for retinitis pigmentosa GTPase regulator, the 5' end
             of the OTC gene for ornithine carbamoyltransferase and two
             CpG islands, complete sequence
          Length = 141577

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     tccaaatgtttaattttattt 23
             |||||||||||||||||||||
Sbjct: 77775 tccaaatgtttaattttattt 77795
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 403     cgcgccctccctcagtgccgccgcc 427
               ||||||||||||| |||||||||||
Sbjct: 1191910 cgcgccctccctctgtgccgccgcc 1191934
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 354    ccgaccgcgtcaccgccaccc 374
              |||||||||||||||||||||
Sbjct: 126036 ccgaccgcgtcaccgccaccc 126016
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>emb|AJ318463.1|HSA318463 Homo sapiens RPGR gene for retinitis pigmentosa GTPase regulator, exons
             1-19
          Length = 77581

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     tccaaatgtttaattttattt 23
             |||||||||||||||||||||
Sbjct: 43800 tccaaatgtttaattttattt 43780
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>gb|AC104042.5| Homo sapiens chromosome 11, clone CTD-2119L1, complete sequence
          Length = 109477

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     aaatgtttaattttatttgat 26
             |||||||||||||||||||||
Sbjct: 53579 aaatgtttaattttatttgat 53559
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>dbj|AK076574.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921518K07 product:unclassifiable, full
            insert sequence
          Length = 4711

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 128  atgaagcaggaaaaaagaaaa 148
            |||||||||||||||||||||
Sbjct: 4656 atgaagcaggaaaaaagaaaa 4676
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 377     gacagggcctccttgccgtgg 397
               |||||||||||||||||||||
Sbjct: 5905844 gacagggcctccttgccgtgg 5905824



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 186      gacgagaagacgaagacgaa 205
                ||||||||||||||||||||
Sbjct: 22959886 gacgagaagacgaagacgaa 22959867
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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   gacagggcctccttgccgtgg 397
             |||||||||||||||||||||
Sbjct: 48292 gacagggcctccttgccgtgg 48272
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>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1559_F09
          Length = 87792

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   gacagggcctccttgccgtgg 397
             |||||||||||||||||||||
Sbjct: 80518 gacagggcctccttgccgtgg 80498
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>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    atgaagcaggaaaaaagaaaa 148
              |||||||||||||||||||||
Sbjct: 157931 atgaagcaggaaaaaagaaaa 157911
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>ref|XM_629929.1| Dictyostelium discoideum hypothetical protein (DDB0184067), partial
           mRNA
          Length = 3351

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   aatgtttaattttatttgat 26
           ||||||||||||||||||||
Sbjct: 482 aatgtttaattttatttgat 501
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>ref|XM_475829.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 633

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 189 gagaagacgaagacgaaccc 208
           ||||||||||||||||||||
Sbjct: 25  gagaagacgaagacgaaccc 6
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>gb|AC102143.10| Mus musculus chromosome 7, clone RP23-292M1, complete sequence
          Length = 169980

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    ctagatgaagcaggaaaaaagaaa 147
              ||||||||||||| ||||||||||
Sbjct: 139438 ctagatgaagcagaaaaaaagaaa 139415
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>gb|AC123071.3| Mus musculus BAC clone RP23-70P8 from chromosome 13, complete sequence
          Length = 252384

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   aagcaggaaaaaagaaaaca 150
             ||||||||||||||||||||
Sbjct: 96445 aagcaggaaaaaagaaaaca 96426
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>ref|XM_322490.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial
           mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 cgacggcgtcctcgagcttg 304
           ||||||||||||||||||||
Sbjct: 472 cgacggcgtcctcgagcttg 453
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>ref|XM_952198.1| Neurospora crassa OR74A hypothetical protein (NCU00405.1) partial
           mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 cgacggcgtcctcgagcttg 304
           ||||||||||||||||||||
Sbjct: 472 cgacggcgtcctcgagcttg 453
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>gb|AC104278.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1345_B12,
             complete sequence
          Length = 119909

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   gagaagacgaagacgaaccc 208
             ||||||||||||||||||||
Sbjct: 67705 gagaagacgaagacgaaccc 67686
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>ref|NM_020880.2| Homo sapiens zinc finger protein 530 (ZNF530), mRNA
          Length = 3010

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 ccctcagtgccgccgccatc 430
           ||||||||||||||||||||
Sbjct: 239 ccctcagtgccgccgccatc 220
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>gb|AC148477.3| Homo sapiens 12 BAC RP13-895J2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160802

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    ggcctccctcagagcctcct 491
              ||||||||||||||||||||
Sbjct: 122776 ggcctccctcagagcctcct 122757
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>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   agcaggaaaaaagaaaacac 151
             ||||||||||||||||||||
Sbjct: 89700 agcaggaaaaaagaaaacac 89681
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>gb|AF545435.1| Homo sapiens thymine-DNA glycosylase (TDG) gene, complete cds
          Length = 25621

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   aagcaggaaaaaagaaaaca 150
             ||||||||||||||||||||
Sbjct: 20788 aagcaggaaaaaagaaaaca 20807
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>ref|XM_777705.1| PREDICTED: Strongylocentrotus purpuratus similar to
           Akt-phosphorylation enhancer (LOC577479), mRNA
          Length = 5469

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 cctccctcagagcctcctcg 493
           ||||||||||||||||||||
Sbjct: 334 cctccctcagagcctcctcg 315
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>gb|BC060865.1| Homo sapiens zinc finger protein 530, mRNA (cDNA clone MGC:71810
           IMAGE:30343224), complete cds
          Length = 3010

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 ccctcagtgccgccgccatc 430
           ||||||||||||||||||||
Sbjct: 239 ccctcagtgccgccgccatc 220
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 507    cctcgatgtgcttgccgtgc 526
              ||||||||||||||||||||
Sbjct: 169285 cctcgatgtgcttgccgtgc 169266
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>emb|AL606522.6| Mouse DNA sequence from clone RP23-19L22 on chromosome 11 Contains the
              Actr2 gene for ARP2 actin-related protein 2 homolog
              (yeast), a small nuclear ribonucleoprotein polypeptide G
              (Snrpg) pseudogene, two novel genes, the Rab1 gene for
              RAB1, member RAS oncogene family and three CpG islands,
              complete sequence
          Length = 203071

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    aagcaggaaaaaagaaaaca 150
              ||||||||||||||||||||
Sbjct: 196883 aagcaggaaaaaagaaaaca 196902
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>dbj|AK096831.1| Homo sapiens cDNA FLJ39512 fis, clone PROST2018977, moderately
           similar to ZINC FINGER PROTEIN 84
          Length = 2961

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 ccctcagtgccgccgccatc 430
           ||||||||||||||||||||
Sbjct: 237 ccctcagtgccgccgccatc 218
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>ref|NM_135844.2| Drosophila melanogaster CG16886-RA (CG16886), mRNA
          Length = 2445

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  gatcctcctcgatgtgcttg 520
            ||||||||||||||||||||
Sbjct: 1205 gatcctcctcgatgtgcttg 1186
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>gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, region 34D-34E, BAC clone
              BACR09N24, complete sequence
          Length = 158758

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 501    gatcctcctcgatgtgcttg 520
              ||||||||||||||||||||
Sbjct: 154509 gatcctcctcgatgtgcttg 154490
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>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone
              BACR16P12, complete sequence
          Length = 171598

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    gatcctcctcgatgtgcttg 520
              ||||||||||||||||||||
Sbjct: 119066 gatcctcctcgatgtgcttg 119085
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>gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ABC transporter gene
             cluster, partial sequence
          Length = 32800

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 291   cgtcctcgagcttggccccgaactgctc 318
             |||||||||||||||||| || ||||||
Sbjct: 16538 cgtcctcgagcttggcccggacctgctc 16511
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>gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete sequence
          Length = 154690

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatccaaatgtttaatttta 20
            ||||||||||||||||||||
Sbjct: 4173 gatccaaatgtttaatttta 4154
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>gb|AC020594.6| Homo sapiens BAC clone RP11-322P19 from 2, complete sequence
          Length = 193410

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     ccaaatgtttaattttattt 23
             ||||||||||||||||||||
Sbjct: 55016 ccaaatgtttaattttattt 55035
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 127   gatgaagcaggaaaaaagaaaaca 150
             ||||||||||||||||| ||||||
Sbjct: 21861 gatgaagcaggaaaaaacaaaaca 21838
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>gb|AC078819.24| Homo sapiens 12q BAC RP11-490H24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172319

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   aagcaggaaaaaagaaaaca 150
             ||||||||||||||||||||
Sbjct: 61808 aagcaggaaaaaagaaaaca 61827
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>ref|XM_343442.2| PREDICTED: Rattus norvegicus phosphoglucomutase 3 (predicted)
            (Pgm3_predicted), mRNA
          Length = 2711

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  aagcaggaaaaaagaaaaca 150
            ||||||||||||||||||||
Sbjct: 2467 aagcaggaaaaaagaaaaca 2486
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   gacgagaagacgaagacgaa 205
             ||||||||||||||||||||
Sbjct: 35100 gacgagaagacgaagacgaa 35081
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>dbj|BS000219.2| Pan troglodytes chromosome 22 clone:RP43-010L20, map 22, complete
             sequences
          Length = 62227

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   aagcaggaaaaaagaaaaca 150
             ||||||||||||||||||||
Sbjct: 42524 aagcaggaaaaaagaaaaca 42543
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>gb|BT021214.1| Drosophila melanogaster RH73259 full insert cDNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  gatcctcctcgatgtgcttg 520
            ||||||||||||||||||||
Sbjct: 1207 gatcctcctcgatgtgcttg 1188
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 418     tgccgccgccatcacctggc 437
               ||||||||||||||||||||
Sbjct: 2097648 tgccgccgccatcacctggc 2097667
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>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete
              sequence
          Length = 304772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    gatcctcctcgatgtgcttg 520
              ||||||||||||||||||||
Sbjct: 268438 gatcctcctcgatgtgcttg 268457
to top
>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete
             sequence
          Length = 176017

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 458   gccaggcactgcacggcctc 477
             ||||||||||||||||||||
Sbjct: 60843 gccaggcactgcacggcctc 60824
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>emb|Y10575.1|HSY10575 H.sapiens TDG gene, exon 6 & 7
          Length = 1169

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 aagcaggaaaaaagaaaaca 150
           ||||||||||||||||||||
Sbjct: 583 aagcaggaaaaaagaaaaca 602
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>dbj|AP001700.1| Homo sapiens genomic DNA, chromosome 21q, section 44/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  aagcaggaaaaaagaaaaca 150
            ||||||||||||||||||||
Sbjct: 7985 aagcaggaaaaaagaaaaca 8004
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>emb|AL832740.1|HSM804051 Homo sapiens mRNA; cDNA DKFZp686J1013 (from clone DKFZp686J1013)
          Length = 2772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 ccctcagtgccgccgccatc 430
           ||||||||||||||||||||
Sbjct: 239 ccctcagtgccgccgccatc 220
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>emb|AL954319.10| Human DNA sequence from clone RP11-5D4 on chromosome 1, complete sequence
          Length = 186291

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    ccctcagtgccgccgccatc 430
              ||||||||||||||||||||
Sbjct: 177091 ccctcagtgccgccgccatc 177110
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>gb|AC003682.1|AC003682 Homo sapiens chromosome 19, overlapping cosmids F18547, F11133, R27945,
             R28830 and R32804, complete sequence
          Length = 153875

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   ccctcagtgccgccgccatc 430
             ||||||||||||||||||||
Sbjct: 88835 ccctcagtgccgccgccatc 88816
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>gb|AC151054.2| Mus musculus BAC clone RP23-147K16 from 13, complete sequence
          Length = 220038

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    aagcaggaaaaaagaaaaca 150
              ||||||||||||||||||||
Sbjct: 213737 aagcaggaaaaaagaaaaca 213756
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>emb|AL049875.2|CNS0000O Human chromosome 14 DNA sequence BAC R-111A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163118

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      caaatgtttaattttatttg 24
              ||||||||||||||||||||
Sbjct: 119829 caaatgtttaattttatttg 119848
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>dbj|AP001607.1| Homo sapiens genomic DNA, chromosome 21, clone:KB851D4, APP-D21S292
             region, complete sequence
          Length = 137676

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   aagcaggaaaaaagaaaaca 150
             ||||||||||||||||||||
Sbjct: 41305 aagcaggaaaaaagaaaaca 41324


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,075,115
Number of Sequences: 3902068
Number of extensions: 5075115
Number of successful extensions: 116354
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115526
Number of HSP's gapped (non-prelim): 828
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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