>ARCA_RHIET (O31017) Arginine deiminase (EC 3.5.3.6) (ADI) (Arginine|
           dihydrolase) (AD)
          Length = 409

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -3

Query: 218 NRGLRRPPGCWTASRISFLVLDLTCSPLKWNCGRFLSSCVRASNKWAAISAGRQSNYWWT 39
           N   +R P CW    +       TC+P+ W   R  +   RA  K+  I  G     WW 
Sbjct: 153 NTLFQRDPSCWIYGGV-------TCNPMFWPARRAETLIQRAIYKFHPIFLGGDFQIWWG 205

Query: 38  GRARP 24
              +P
Sbjct: 206 DSDQP 210

>ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 903

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
 Frame = +1

Query: 130 HFNGEQVRSSTRNEIRDAVQHPGGRLSPRLQEMEHVVLPRRVHQL---------GLPAPP 282
           HFN  + R S + +  D  +    R  P+LQ  + V+LP  +HQ           LPA P
Sbjct: 779 HFNTPKDRHSLKCQNMDISRPLDARAVPQLQSPQRVLLP--LHQTPRAPSGPARPLPASP 836

Query: 283 AREQRRMVRPP 315
           A  Q + +R P
Sbjct: 837 AVRQAQGIRKP 847

>NIMA_EMENI (P11837) G2-specific protein kinase nimA (EC 2.7.11.1) (Never in|
           mitosis)
          Length = 699

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -3

Query: 314 GGRTMRRCSRAGGAGRPSWWTRR----GRTTCSISCNRGLRRPPGCWTASR 174
           GGRT+   ++A   GRP    +R     R+ CS+      R PP  W   R
Sbjct: 630 GGRTLVELAQARAGGRPIDEVKRCASDSRSGCSVPMKSADRDPPAVWDPER 680

>RNF38_HUMAN (Q9H0F5) RING finger protein 38|
          Length = 515

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 124 QFHFNGEQVRSSTRNEIRDAVQHPGGRLSPRLQEMEHVVLPRRVHQLGLPAPPAREQRRM 303
           Q HF+GE+  +  RN     V+   GR   RL     +      H L      A E+ R 
Sbjct: 102 QHHFSGERCNTPARNRRSPPVRRQRGR-RDRLSRHNSISQDENYHHLPYAQQQAIEEPRA 160

Query: 304 VRPP 315
             PP
Sbjct: 161 FHPP 164

>ARCA1_RHIME (Q92ZT2) Arginine deiminase 1 (EC 3.5.3.6) (ADI 1) (Arginine|
           dihydrolase 1) (AD 1)
          Length = 409

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -3

Query: 218 NRGLRRPPGCWTASRISFLVLDLTCSPLKWNCGRFLSSCVRASNKWAAISAGRQSNYWW 42
           N   +R P CW  + +       TC+P+ W   R  +   RA  K+     G   + WW
Sbjct: 153 NTLFQRDPSCWIYNGV-------TCNPMFWPARRAETLIQRAVYKFHPSFKGAAFDIWW 204

>RNF38_MOUSE (Q8BI21) RING finger protein 38|
          Length = 518

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 124 QFHFNGEQVRSSTRNEIRDAVQHPGGRLSPRLQEMEHVVLPRRVHQLGLPAPPAREQRRM 303
           Q HF+GE+  +  RN     V+   GR   RL     +      H L      A E+ R 
Sbjct: 105 QHHFSGERCNTPARNRRSPPVRRQRGR-RERLSRHNSISQDENYHHLPYAQQQAIEEPRA 163

Query: 304 VRPP 315
             PP
Sbjct: 164 FHPP 167

>SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1|
          Length = 785

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 181 AVQHPGGRLSPRLQEMEHVVLPRRVHQLGLPAPPAREQRRMVRPP 315
           + Q+PG   +PR   +  +    + HQL +P PP   Q  M RPP
Sbjct: 574 SAQYPG---APRPLGVPMMQPMHQQHQLTMPGPPGHPQMMMNRPP 615

>DZIP3_HUMAN (Q86Y13) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-) (DAZ-interacting|
            protein 3) (RNA-binding ubiquitin ligase of 138 kDa)
            (hRUL138)
          Length = 1208

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 242  CPGVSTSSASPRHPLASSAAWYARPFTARKSSPATA 349
            CPGV +++  PR PL +  AW A P     + P +A
Sbjct: 989  CPGVVSATGQPRAPLMTGIAW-ALPAPVGDAVPPSA 1023

>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 296 RCSRAGGAG--RPSWWTRRGRTTCSISCN 216
           RC +A GA   +P WW RR    CS  CN
Sbjct: 171 RCEQATGACVCKPGWWGRR----CSFRCN 195

>ENV_RSFFV (P03389) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Spike protein p15E]
          Length = 408

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  YGSSSTSPPIVGLTPGGDCCPFI 89
           Y SS+ S  I G TPGG C P +
Sbjct: 163 YDSSAVSSDIKGATPGGRCNPLV 185

>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 194 PAAASVPGCRRWNTWSCPGVSTSSASPRHPLASSAAWYARPFTARKSSPATA 349
           P+AA+   CRR    S P  + S A    P A++AA   +P +A     A A
Sbjct: 206 PSAAASSCCRRRRACSSPTTAWSGACGAGPTAATAAQPGKPRSAAAPGRARA 257

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 19/77 (24%)
 Frame = +3

Query: 57  LTPGGDCCPFITRP------------DARRQEPTTIPLQRG-------AGEVEHEK*NPR 179
           +TP G+CCP  ++               ++ EP  +P+  G       AG    +     
Sbjct: 86  VTPPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGE 145

Query: 180 RGPTSRRPPQSPVAGDG 230
           RGP  R  P+ P   DG
Sbjct: 146 RGPKGRPGPRGPQGIDG 162

>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor|
            (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
            (Apolipoprotein E receptor) (APOER) (CD91 antigen)
          Length = 4544

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
 Frame = -3

Query: 266  PSWWTRRGRTTCS-------ISCNRGLRRPPGCWTASRISFLVLDLTCSPLKWNC 123
            P  WT  G   C         +C     RPPG           LD  C PL+W C
Sbjct: 1029 PEHWTCDGDNDCGDYSDETHANCTNQATRPPGGCHTDEFQCR-LDGLCIPLRWRC 1082

>RNB_HHV1M (P56958) RNA-binding protein (Vmw21)|
          Length = 161

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 27  SSSTSPPIVGLTPGGDCCPFITRPDARRQEPTTIPLQRGAGEVEHEK*NPRRGPTSRRPP 206
           S +  PP +  TP     P + RP    +EP  +P       V  +  +PR+ P S R P
Sbjct: 76  SEAVRPPTIPRTPRVPREPRVPRPPREPREP-RVPRASRDPRVPRDPRDPRQ-PRSPREP 133

Query: 207 QSP 215
           +SP
Sbjct: 134 RSP 136

>ENV_MCFF3 (P03388) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Spike protein p15E; R protein]
          Length = 640

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  YGSSSTSPPIVGLTPGGDCCPFI 89
           Y SS+ S  I G TPGG C P +
Sbjct: 163 YDSSAVSSDIKGATPGGRCNPLV 185

>ENV1_MOUSE (P10404) Retrovirus-related Env polyprotein precursor [Contains:|
           Coat protein GP70] (Fragment)
          Length = 313

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  YGSSSTSPPIVGLTPGGDCCPFI 89
           Y SS+ S  I G TPGG C P +
Sbjct: 163 YDSSAVSSDIKGATPGGRCNPLV 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,318,262
Number of Sequences: 219361
Number of extensions: 1179361
Number of successful extensions: 4316
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4314
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)