ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_PEA (O82709) Calnexin homolog precursor 58 1e-08
2CALX_SOYBN (Q39817) Calnexin homolog precursor 57 2e-08
3CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 54 3e-07
4CALX_HELTU (Q39994) Calnexin homolog precursor 52 8e-07
5CALX1_ARATH (P29402) Calnexin homolog 1 precursor 49 7e-06
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 1.1
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 1.9
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 2.5
9LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 ... 29 7.2
10KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-ass... 29 7.2
11KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-ass... 28 9.4
12ACVR1_BOVIN (Q28041) Activin receptor type-1 precursor (EC 2.7.1... 28 9.4

>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -1

Query: 470 KIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 351
           K KII++IEKGEKQPN+TI I+ SV ++ V++ FR IFGG
Sbjct: 463 KEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIFGG 502



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>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = -1

Query: 473 YKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 351
           +K KI DLIEK EKQPN+TI IL +V V+ V++ FR IFGG
Sbjct: 457 HKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGG 497



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 24/62 (38%), Positives = 36/62 (58%)
 Frame = -1

Query: 473 YKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGGXXXXXXXXXXXXXXXPSAT 294
           YK KI++LIEK E QPN+TI +L S+ ++ +++ F+ IFGG                S +
Sbjct: 450 YKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAKVEKKKPETAAETSTS 509

Query: 293 EA 288
           EA
Sbjct: 510 EA 511



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 19/41 (46%), Positives = 33/41 (80%)
 Frame = -1

Query: 473 YKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 351
           +K+K+++LIEK E QPNITI ++ S+ V++ ++L + +FGG
Sbjct: 451 HKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGG 491



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = -1

Query: 473 YKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 351
           YK KI +LIEK E+QPN+TI +L ++ V+  ++  + IFGG
Sbjct: 448 YKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGG 488



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -3

Query: 408 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 283
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 399 SCCHPCYCALQNHFRWQEGSGTCEARCC 316
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 384 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 289
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338



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>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -3

Query: 414 FDFGLSCCHPCYCALQNHFRWQEGSGTCEARCCGEEAQCH 295
           F FG S C PC C LQ         G+  A C     QCH
Sbjct: 811 FGFGPSGCKPCECHLQ---------GSVNAFCNPVTGQCH 841



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>KRA52_HUMAN (Q701N4) Keratin-associated protein 5-2 (Keratin-associated protein|
           5.2) (Ultrahigh sulfur keratin-associated protein 5.2)
           (Keratin-associated protein 5-8) (Keratin-associated
           protein 5.8)
          Length = 177

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 399 SCCHPCYCALQNHFRWQEGSGTCEARCCGEEAQCHGSRC 283
           SCC PC C+         GS  C++ CC +   C  S C
Sbjct: 117 SCCKPCCCSSGC------GSSCCQSSCC-KPCCCQSSCC 148



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>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 399 SCCHPCYCALQNHFRWQEGSGTCEARCCGEEAQCHGSRC 283
           SCC PC C+         GS  C++ CC  +  C  S C
Sbjct: 200 SCCKPCCCSSGC------GSSCCQSSCC--KPCCSSSGC 230



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>ACVR1_BOVIN (Q28041) Activin receptor type-1 precursor (EC 2.7.11.30) (Activin|
           receptor type I) (ACTR-I) (Serine/threonine-protein
           kinase receptor R1) (SKR1)
          Length = 509

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 333 CEARCCGEEAQCHGSRC 283
           CE   CG+EA C G +C
Sbjct: 37  CEGLSCGDEAHCEGQQC 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,024,570
Number of Sequences: 219361
Number of extensions: 815974
Number of successful extensions: 2512
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2507
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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