ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart40a03 |
|---|---|
| Clone Library Name | barley_pub |
>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1| Length = 304 Score = 133 bits (334), Expect = 2e-31 Identities = 65/74 (87%), Positives = 70/74 (94%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKAS 275 +HFSEY+KKGI+ADGMEALYKKVHAAIRADPT+AKSTK+ P THKRYN KKLTYEQRKAS Sbjct: 221 AHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKAS 280 Query: 274 LVERLNALNSSGGA 233 LVERLNALNSS GA Sbjct: 281 LVERLNALNSSAGA 294
>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2| Length = 304 Score = 132 bits (331), Expect = 5e-31 Identities = 64/74 (86%), Positives = 70/74 (94%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKAS 275 +HFSEY+KKGI+ADGME+LYKKVHAAIRADPT+AKSTK+ P THKRYN KKLTYEQRKAS Sbjct: 221 AHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKAS 280 Query: 274 LVERLNALNSSGGA 233 LVERLNALNSS GA Sbjct: 281 LVERLNALNSSAGA 294
>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5| Length = 302 Score = 111 bits (278), Expect = 7e-25 Identities = 55/71 (77%), Positives = 60/71 (84%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKAS 275 SHFSEYIKKGIEAD +E LYKKVHAAIRA+P KS K PK HKRYN KKLTY++RKA Sbjct: 220 SHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKAR 279 Query: 274 LVERLNALNSS 242 LVERLNALNS+ Sbjct: 280 LVERLNALNSA 290
>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)| Length = 121 Score = 109 bits (273), Expect = 3e-24 Identities = 51/73 (69%), Positives = 60/73 (82%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKAS 275 SHFS YIK + D +E +YKKVHAAIR DP+ KS K+PPKTHKRYN KKLTYE+RKA Sbjct: 39 SHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAK 98 Query: 274 LVERLNALNSSGG 236 L+ERLNALN++GG Sbjct: 99 LIERLNALNAAGG 111
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 102 bits (255), Expect = 3e-22 Identities = 47/73 (64%), Positives = 58/73 (79%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKAS 275 +HFS YIKKG+EA+ +E +YKKVHAAIRA+P K+ K PK HKRYN KKLTYE+RK Sbjct: 220 THFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNK 279 Query: 274 LVERLNALNSSGG 236 L+ER+ ALN +GG Sbjct: 280 LIERVKALNGAGG 292
>RL5_BOMMO (O76190) 60S ribosomal protein L5| Length = 299 Score = 62.8 bits (151), Expect = 4e-10 Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 8/73 (10%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPT-IAKSTKEPPKTHKRYNPKKLT-------Y 293 FS+YIK G+ AD +EA+YKK H AIRADP+ K K+ KR+N +KLT Sbjct: 223 FSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRI 282 Query: 292 EQRKASLVERLNA 254 +Q+KAS ++RL A Sbjct: 283 KQKKASFIKRLQA 295
>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)| Length = 301 Score = 61.6 bits (148), Expect = 9e-10 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 7/77 (9%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHK-------RYNPKKLT 296 S F+ YI+ +EADG+E LY + HAAIR DP ++ P KT + +Y KLT Sbjct: 224 SQFNRYIEDDLEADGLEDLYAEAHAAIREDPFKKAESEAPKKTKEEWKAESLKYKKSKLT 283 Query: 295 YEQRKASLVERLNALNS 245 EQR A + ER+ AL S Sbjct: 284 REQRAAGVQERIAALRS 300
>RL5_STYCL (Q26481) 60S ribosomal protein L5| Length = 294 Score = 61.6 bits (148), Expect = 9e-10 Identities = 31/56 (55%), Positives = 39/56 (69%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 281 FS+YIK G+ AD +E +Y K HAAIR DPT K T KT KR+N KK+T+ QR+ Sbjct: 222 FSQYIKHGVTADTVEEMYTKAHAAIREDPTPKKKTDFAGKT-KRWNRKKMTFSQRR 276
>RL5_HELAN (O65353) 60S ribosomal protein L5| Length = 297 Score = 58.2 bits (139), Expect = 1e-08 Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 3/62 (4%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADP---TIAKSTKEPPKTHKRYNPKKLTYEQRKA 278 FS+YIK G+ AD +E LYKK H AIRA+P T+AK K PK KR+ KKLT EQR+ Sbjct: 223 FSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAK--KAHPK--KRWTEKKLTREQRQG 278 Query: 277 SL 272 + Sbjct: 279 KV 280
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 56.6 bits (135), Expect = 3e-08 Identities = 29/62 (46%), Positives = 40/62 (64%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK G+ AD +E LYKK HA IR +P K K+ K KR+N KL+ EQ+K + Sbjct: 222 FSQYIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 56.2 bits (134), Expect = 4e-08 Identities = 28/62 (45%), Positives = 40/62 (64%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK G+ AD +E +YKK HA IR +P K K+ K KR+N KL+ EQ+K + Sbjct: 222 FSQYIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKEVK-KKRWNRAKLSLEQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5_CAEEL (P49405) 60S ribosomal protein L5| Length = 293 Score = 54.7 bits (130), Expect = 1e-07 Identities = 26/62 (41%), Positives = 42/62 (67%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+++ G+ AD + A Y+KVH+AIRAD + A K+ K KR+ K+LTY++RK + Sbjct: 222 FSKFLAAGLNADNLVATYQKVHSAIRADASPA--AKKAAKPSKRHTAKRLTYDERKQRVA 279 Query: 268 ER 263 ++ Sbjct: 280 DK 281
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 53.9 bits (128), Expect = 2e-07 Identities = 28/62 (45%), Positives = 37/62 (59%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK I DGME +YKK HAAIR +P K K K KR N K++ Q+K + Sbjct: 222 FSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVK-KKRVNSTKMSLAQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/62 (41%), Positives = 38/62 (61%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK + D ME +YKK HAAIR +P K K+ K KR+N K++ Q+K + Sbjct: 222 FSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/62 (41%), Positives = 38/62 (61%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK + D ME +YKK HAAIR +P K K+ K KR+N K++ Q+K + Sbjct: 222 FSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 52.0 bits (123), Expect = 7e-07 Identities = 26/62 (41%), Positives = 37/62 (59%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK + D ME +YKK HAAIR +P K K K KR+N K++ Q+K + Sbjct: 222 FSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 52.0 bits (123), Expect = 7e-07 Identities = 26/62 (41%), Positives = 37/62 (59%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLV 269 FS+YIK + D ME +YKK HAAIR +P K K K KR+N K++ Q+K + Sbjct: 222 FSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVA 280 Query: 268 ER 263 ++ Sbjct: 281 QK 282
>RL5_DUNSA (O22608) 60S ribosomal protein L5| Length = 271 Score = 51.2 bits (121), Expect = 1e-06 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -1 Query: 454 SHFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPK 305 +HFS Y++ IE DG+E +YK+VHA IR +P K + P KR++P+ Sbjct: 219 AHFSSYVENEIEPDGIEDMYKEVHAKIRENPCPPKKERTKPADAKRWSPQ 268
>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S| RNA-binding protein) Length = 296 Score = 45.8 bits (107), Expect = 5e-05 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRAD----PTIAKSTKEP-PKTHKRYNPKKLTYEQR 284 F Y+ I+AD +E +Y H AIRAD PT K TKE K+Y KL+ E+R Sbjct: 222 FKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEER 281 Query: 283 KASLVERLNAL 251 A + ++ AL Sbjct: 282 AARVAAKIAAL 292
>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B| Length = 294 Score = 45.4 bits (106), Expect = 7e-05 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEP---PKTHKRYNPKKLTYEQRKA 278 FS I GIE+D +E +Y + +A IR DP+ KS K+ +Y +KLT E+RK Sbjct: 223 FSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK- 281 Query: 277 SLVERLNA 254 ER NA Sbjct: 282 ---ERFNA 286
>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A| Length = 294 Score = 43.5 bits (101), Expect = 2e-04 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEP---PKTHKRYNPKKLTYEQRKA 278 FS I GIE+D +E +Y + +A IR DP+ KS K+ ++ +KLT E+RK Sbjct: 223 FSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERK- 281 Query: 277 SLVERLNA 254 ER NA Sbjct: 282 ---ERFNA 286
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 36.6 bits (83), Expect = 0.030 Identities = 16/29 (55%), Positives = 21/29 (72%) Frame = -1 Query: 448 FSEYIKKGIEADGMEALYKKVHAAIRADP 362 FS+YI GI+AD +E +YK HA+IR P Sbjct: 223 FSKYISLGIKADDIENIYKNAHASIRKIP 251
>QUEA_BACSK (Q5WHR3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 30.0 bits (66), Expect = 2.8 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 451 HFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRY 314 HFSE + IEA G++ +Y +H + ++ S+ E + H Y Sbjct: 183 HFSEQLLLEIEAKGVKIVYITLHVGLGTFRPVSASSVEDHQMHAEY 228
>RL5_RABIT (P19949) 60S ribosomal protein L5 (Fragments)| Length = 101 Score = 29.6 bits (65), Expect = 3.7 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = -1 Query: 439 YIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASLVER 263 Y +K + HAAIR +P K K K KR+N K++ Q+K + ++ Sbjct: 30 YARKRLVIQDKNKYNTPAHAAIRENPVYEKKPKREVK-KKRWNRPKMSLAQKKDRVAQK 87
>QUEA_LISIN (Q92BI3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/72 (25%), Positives = 33/72 (45%) Frame = -1 Query: 451 HFSEYIKKGIEADGMEALYKKVHAAIRADPTIAKSTKEPPKTHKRYNPKKLTYEQRKASL 272 HF+E + I A G+E ++ +H + + + K H + +LT E Sbjct: 183 HFTEELLAQISAKGVEIIFVTLHVGLGTFRPVDVEDTQNHKMHSEF--YRLTEES----- 235 Query: 271 VERLNALNSSGG 236 +R+N + S+GG Sbjct: 236 ADRINKIKSAGG 247
>NU4M_CERCA (Q34048) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 446 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 302 LLGIVPLVRLWWFLG*FCYCRISTNGSMNLL 394 LL +P + LWWFL C ++ S+NLL Sbjct: 336 LLNFMPSMTLWWFL--LSVCNMAAPPSLNLL 364
>RPB9_YEAST (P27999) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)| (DNA-directed RNA polymerase II 14.2 kDa polypeptide) (B12.6) Length = 122 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 376 IRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 281 I +DPT+ +S +E PK H R N + ++RK Sbjct: 62 IGSDPTLPRSDRECPKCHSRENVFFQSQQRRK 93
>RPB9_CANGA (Q6FS48) DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6)| Length = 122 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 376 IRADPTIAKSTKEPPKTHKRYNPKKLTYEQRK 281 I +DPT+ +S +E PK H R N + ++RK Sbjct: 62 IGSDPTLPRSDRECPKCHSRENVFFQSQQRRK 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,461,492 Number of Sequences: 219361 Number of extensions: 1128259 Number of successful extensions: 3133 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3014 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3125 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
