ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart40a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transpor... 44 1e-04
2CHL1_ARATH (Q05085) Nitrate/chlorate transporter 37 0.013
3GTR4_PIG (Q9XT10) Solute carrier family 2, facilitated glucose t... 29 3.6

>PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transporting protein)|
          Length = 585

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = -1

Query: 264 VGHFFSSFLISAIDGYTKKSGAS-WFSNNLNRAHLDYFYW 148
           +G++ SS +++ +  +T ++G   W S+NLN  HLDYF+W
Sbjct: 519 LGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFW 558



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>CHL1_ARATH (Q05085) Nitrate/chlorate transporter|
          Length = 590

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 276 SIFGVGHFFSSFLISAIDGYTKKSGASWFSNNLNRAHLDYFYW 148
           S   +G FFSS L++ ++ +T K+   W +++LN+  L  FYW
Sbjct: 505 STLALGFFFSSVLVTIVEKFTGKAHP-WIADDLNKGRLYNFYW 546



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>GTR4_PIG (Q9XT10) Solute carrier family 2, facilitated glucose transporter|
           member 4 (Glucose transporter type 4,
           insulin-responsive) (Fragment)
          Length = 174

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 276 SIFGVGHFFSSFLISAIDGYTKKSGASWFSNNL 178
           +IF VG  FSSFL+  I  +  +  A  F+N L
Sbjct: 81  AIFSVGGMFSSFLLGIISQWLGRKKAMLFNNTL 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,361,355
Number of Sequences: 219361
Number of extensions: 216982
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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