Clone Name | rbart39h09 |
---|---|
Clone Library Name | barley_pub |
>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds Length = 1092 Score = 172 bits (87), Expect = 1e-40 Identities = 99/103 (96%) Strand = Plus / Minus Query: 1 gagggcaaatcaaatcgactcacagccttcttaatttattcatcgcacggagcgggtata 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 gaggccaaatcaaatcgactcacagccttcttaatttattcatcgcacggagcgggtata 1004 Query: 61 aaaatggaatcgcagggggcaactcggggctgcccccaccgaa 103 ||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 1003 gaaatggaatcgcaggtggcaactcggtgctgcccccaccgaa 961
>emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione transferase (gstu1A gene) Length = 1085 Score = 60.0 bits (30), Expect = 1e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 62 aaatggaatcgcagggggcaactcggggctgcccccaccgaa 103 ||||||||| ||||| |||||||||| ||||||||||||||| Sbjct: 1022 aaatggaatggcaggtggcaactcggtgctgcccccaccgaa 981
>emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione transferase (gstu1C gene) Length = 1008 Score = 54.0 bits (27), Expect = 8e-05 Identities = 50/58 (86%), Gaps = 6/58 (10%) Strand = Plus / Minus Query: 26 ccttcttaatttattcatcgcacggagcgggtataaaaatggaatcgcagggggcaac 83 |||||||||||||||||||||||||| || |||||||||||||||| |||||| Sbjct: 984 ccttcttaatttattcatcgcacgga------atgaaaatggaatcgcaggtggcaac 933
>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA sequence Length = 1966 Score = 46.1 bits (23), Expect = 0.019 Identities = 23/23 (100%) Strand = Plus / Minus Query: 29 tcttaatttattcatcgcacgga 51 ||||||||||||||||||||||| Sbjct: 1030 tcttaatttattcatcgcacgga 1008
>gb|AC012353.6| Homo sapiens BAC clone RP11-82P18 from 2, complete sequence Length = 203755 Score = 42.1 bits (21), Expect = 0.30 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 tataaaaatggaatcgcaggg 77 ||||||||||||||||||||| Sbjct: 60292 tataaaaatggaatcgcaggg 60312
>gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complete sequence Length = 116507 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tcacagccttcttaatttat 39 |||||||||||||||||||| Sbjct: 11950 tcacagccttcttaatttat 11969
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ccttcttaatttattcatcg 45 |||||||||||||||||||| Sbjct: 4116807 ccttcttaatttattcatcg 4116826
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ccttcttaatttattcatcg 45 |||||||||||||||||||| Sbjct: 26821 ccttcttaatttattcatcg 26840
>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21 Length = 170051 Score = 40.1 bits (20), Expect = 1.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ccttcttaatttattcatcg 45 |||||||||||||||||||| Sbjct: 163473 ccttcttaatttattcatcg 163492
>gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete sequence Length = 192132 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggagcgggtataaaaatgg 67 ||||||||||||||||||| Sbjct: 150247 ggagcgggtataaaaatgg 150229
>emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione transferase (gstu1B gene) Length = 1051 Score = 38.2 bits (19), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 tcttaatttattcatcgcacgga 51 ||||||||||||| ||||||||| Sbjct: 1006 tcttaatttattcctcgcacgga 984
>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 120070 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 ccttcttaatttattcatc 44 ||||||||||||||||||| Sbjct: 44358 ccttcttaatttattcatc 44340
>gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76 of 83 of the complete sequence Length = 257666 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggagcgggtataaaaatgg 67 ||||||||||||||||||| Sbjct: 113239 ggagcgggtataaaaatgg 113221
>gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 DS02109 (D53)), complete sequence Length = 79826 Score = 38.2 bits (19), Expect = 4.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggagcgggtataaaaatgg 67 ||||||||||||||||||| Sbjct: 6781 ggagcgggtataaaaatgg 6763 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 874,894 Number of Sequences: 3902068 Number of extensions: 874894 Number of successful extensions: 62634 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62581 Number of HSP's gapped (non-prelim): 53 length of query: 105 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 84 effective length of database: 17,151,101,840 effective search space: 1440692554560 effective search space used: 1440692554560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)