ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase... 172 1e-40
2emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione ... 60 1e-06
3emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione ... 54 8e-05
4gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full... 46 0.019
5gb|AC012353.6| Homo sapiens BAC clone RP11-82P18 from 2, complet... 42 0.30
6gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complet... 40 1.2
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
8dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
9dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
10gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete... 38 4.7
11emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione ... 38 4.7
12gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Canc... 38 4.7
13gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76... 38 4.7
14gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 ... 38 4.7

>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds
          Length = 1092

 Score =  172 bits (87), Expect = 1e-40
 Identities = 99/103 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    gagggcaaatcaaatcgactcacagccttcttaatttattcatcgcacggagcgggtata 60
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 gaggccaaatcaaatcgactcacagccttcttaatttattcatcgcacggagcgggtata 1004

                                                       
Query: 61   aaaatggaatcgcagggggcaactcggggctgcccccaccgaa 103
             ||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1003 gaaatggaatcgcaggtggcaactcggtgctgcccccaccgaa 961



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>emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione transferase (gstu1A gene)
          Length = 1085

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 62   aaatggaatcgcagggggcaactcggggctgcccccaccgaa 103
            ||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 1022 aaatggaatggcaggtggcaactcggtgctgcccccaccgaa 981



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>emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione transferase (gstu1C gene)
          Length = 1008

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 50/58 (86%), Gaps = 6/58 (10%)
 Strand = Plus / Minus

                                                                     
Query: 26  ccttcttaatttattcatcgcacggagcgggtataaaaatggaatcgcagggggcaac 83
           ||||||||||||||||||||||||||      || |||||||||||||||| ||||||
Sbjct: 984 ccttcttaatttattcatcgcacgga------atgaaaatggaatcgcaggtggcaac 933



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>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA
            sequence
          Length = 1966

 Score = 46.1 bits (23), Expect = 0.019
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 29   tcttaatttattcatcgcacgga 51
            |||||||||||||||||||||||
Sbjct: 1030 tcttaatttattcatcgcacgga 1008



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>gb|AC012353.6| Homo sapiens BAC clone RP11-82P18 from 2, complete sequence
          Length = 203755

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 57    tataaaaatggaatcgcaggg 77
             |||||||||||||||||||||
Sbjct: 60292 tataaaaatggaatcgcaggg 60312



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>gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complete sequence
          Length = 116507

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tcacagccttcttaatttat 39
             ||||||||||||||||||||
Sbjct: 11950 tcacagccttcttaatttat 11969



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 26      ccttcttaatttattcatcg 45
               ||||||||||||||||||||
Sbjct: 4116807 ccttcttaatttattcatcg 4116826



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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ccttcttaatttattcatcg 45
             ||||||||||||||||||||
Sbjct: 26821 ccttcttaatttattcatcg 26840



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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A21
          Length = 170051

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ccttcttaatttattcatcg 45
              ||||||||||||||||||||
Sbjct: 163473 ccttcttaatttattcatcg 163492



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>gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete sequence
          Length = 192132

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     ggagcgggtataaaaatgg 67
              |||||||||||||||||||
Sbjct: 150247 ggagcgggtataaaaatgg 150229



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>emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione transferase (gstu1B gene)
          Length = 1051

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 29   tcttaatttattcatcgcacgga 51
            ||||||||||||| |||||||||
Sbjct: 1006 tcttaatttattcctcgcacgga 984



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>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120070

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ccttcttaatttattcatc 44
             |||||||||||||||||||
Sbjct: 44358 ccttcttaatttattcatc 44340



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>gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76 of 83 of the complete
              sequence
          Length = 257666

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     ggagcgggtataaaaatgg 67
              |||||||||||||||||||
Sbjct: 113239 ggagcgggtataaaaatgg 113221



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>gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 DS02109 (D53)), complete
            sequence
          Length = 79826

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   ggagcgggtataaaaatgg 67
            |||||||||||||||||||
Sbjct: 6781 ggagcgggtataaaaatgg 6763


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 874,894
Number of Sequences: 3902068
Number of extensions: 874894
Number of successful extensions: 62634
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62581
Number of HSP's gapped (non-prelim): 53
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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