ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39h08 |
|---|---|
| Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 48.1 bits (113), Expect = 1e-05 Identities = 20/35 (57%), Positives = 28/35 (80%) Frame = -1 Query: 527 FSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQY 423 FSIR+ +ESGK ++A++VIP NWRP+ Y S VQ+ Sbjct: 234 FSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/35 (54%), Positives = 28/35 (80%) Frame = -1 Query: 527 FSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQY 423 FSIR+ +ESGK ++A+++IP NWRP+ Y S VQ+ Sbjct: 156 FSIRLTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%) Frame = -1 Query: 524 SIRIRN-ESGKTLVARNVIPKNWRPNTFYRSIVQY 423 S+R+ + ESGKT+VA NVIP NW+P Y+S V + Sbjct: 239 SLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = -1 Query: 527 FSIRIRN-ESGKTLVARNVIPKNWRPNTFYRSIVQY 423 F+IR+ + ES K +VA NVIP NW+P+ YRSIV + Sbjct: 224 FNIRLTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 41.6 bits (96), Expect = 0.001 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = -1 Query: 527 FSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQY 423 FSIR+ +E G LV +VIP NW+P+T Y S +Q+ Sbjct: 210 FSIRLTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 35.4 bits (80), Expect = 0.097 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -1 Query: 527 FSIRIRNES-GKTLVARNVIPKNWRPNTFYRSIVQYS 420 FSI++ S GKTL A +V+P+NW P Y S + +S Sbjct: 225 FSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 34.7 bits (78), Expect = 0.17 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -1 Query: 527 FSIRIRNE-SGKTLVARNVIPKNWRPNTFYRSIVQY 423 F+IR+ + SGK ++A+ VIP+ W P Y S V + Sbjct: 222 FNIRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 31.6 bits (70), Expect = 1.4 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -1 Query: 527 FSIRIRNESG-KTLVARNVIPKNWRPNTFYRSIVQYS 420 FS+++ S KTL A +VIP NW P Y S + +S Sbjct: 232 FSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268
>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556| Length = 395 Score = 31.2 bits (69), Expect = 1.8 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = -3 Query: 525 LHPHPQRVRQDARRPQRHPQELEAQH---LLPLHRPVQLDKMAIVSHRLPPSNQPTSKR 358 +HP P ++RQ ARR RH ++ L PL RP+ L H P+ QP R Sbjct: 212 VHPVPGQLRQPARRYPRHINGAHSERGDLLRPLQRPLHLR----TRHPHRPAPQPVQLR 266
>GIDA_XANCP (Q8PDG1) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 351 TELSCWLVGSTEEDDD-*RWPSYLAVLDDGAVEGVGP 458 T++SCW+ +TE+ D R + + L G +EG+GP Sbjct: 244 TQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGP 280
>GIDA_XANC8 (Q4UZP9) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 351 TELSCWLVGSTEEDDD-*RWPSYLAVLDDGAVEGVGP 458 T++SCW+ +TE+ D R + + L G +EG+GP Sbjct: 244 TQVSCWITHTTEQTHDIIRGALHRSPLYSGQIEGIGP 280
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 527 FSIRIRNESGKTLVARNVIPKNWRPNTFYRS 435 F++R E G A +VIP+ W+ +T Y S Sbjct: 232 FTVRYTTEGGTKTEAEDVIPEGWKADTSYES 262
>KAPR_YEAST (P07278) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 415 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -3 Query: 525 LHPHPQRVRQDARRPQRHPQELEAQHLLPLHRPVQLDKMAIVSHRLPPSN 376 L PH Q Q A+ Q+H +E + LP+H Q + ++ L P+N Sbjct: 106 LDPHEQDTHQQAQEEQQHTREKTSTPPLPMHFNAQ-RRTSVSGETLQPNN 154
>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)| (Extracellular matrix protein 17) Length = 1442 Score = 30.0 bits (66), Expect = 4.1 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +3 Query: 330 LIKTPAKTELSCWLVGSTEEDDD*RWPSYLAVLDDG 437 L KT A E+ WL G E+DDD WPS DG Sbjct: 1013 LPKTTAYHEV--WLEGPEEQDDDPSWPSIFENRKDG 1046
>YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in chromosome I (EC| 2.-.-.-) Length = 533 Score = 30.0 bits (66), Expect = 4.1 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 169 FRLCGCICRMQCQPSTNM*LHALYPFMKHDRIYVLLL 59 F LC CIC+ C P YP + R+Y+ L+ Sbjct: 75 FLLCRCICKSNCSP---------YPILLFTRLYMCLI 102
>SC11A_MOUSE (Q9R053) Sodium channel protein type 11 alpha subunit (Sodium| channel protein type XI alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.9) (Sensory neuron sodium channel 2) (NaN) Length = 1765 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 516 HPQRVRQDARRPQRHPQELEAQHLLPLHRPVQLDKMAIVS 397 +PQ + Q R Q P EL +H+ PLHR L ++I++ Sbjct: 489 NPQLLEQTKRLSQNLPVELFDEHVDPLHRQRALSAVSILT 528
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 99 YRACSYIFVEGWHCMRQMHPQSLKQSI 179 Y AC E W+CM+ +HP +L Q+I Sbjct: 631 YTACK----ENWNCMQCLHPHNLSQAI 653
>AFLR_ASPPA (P43651) Aflatoxin biosynthesis regulatory protein| Length = 444 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/47 (38%), Positives = 20/47 (42%) Frame = -3 Query: 522 HPHPQRVRQDARRPQRHPQELEAQHLLPLHRPVQLDKMAIVSHRLPP 382 H HPQ PQ HPQ + H LP AI SH+ PP Sbjct: 113 HSHPQP------HPQSHPQSNQPPHALPTPNG-SSSVSAIFSHQSPP 152
>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein| Length = 437 Score = 29.3 bits (64), Expect = 7.0 Identities = 18/47 (38%), Positives = 20/47 (42%) Frame = -3 Query: 522 HPHPQRVRQDARRPQRHPQELEAQHLLPLHRPVQLDKMAIVSHRLPP 382 H HPQ PQ HPQ + H LP AI SH+ PP Sbjct: 113 HSHPQP------HPQSHPQSNQPPHALPTPNG-SSSVSAIFSHQSPP 152
>CORO_CAEEL (Q21624) Coronin-like protein cor-1| Length = 605 Score = 28.9 bits (63), Expect = 9.1 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -3 Query: 492 ARRPQRHPQELEAQHLLPLHRPVQLDKMAIVSHRLPPSNQPTSKRA 355 + RP Q P RPV D M IV+ R P ++P S RA Sbjct: 427 SERPPSSQQPSPRPSASPRPRPVVDDDMGIVTMREAPPSRPASSRA 472 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,149,335 Number of Sequences: 219361 Number of extensions: 1412429 Number of successful extensions: 3377 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3370 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
