ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39h01 |
|---|---|
| Clone Library Name | barley_pub |
>NFKB2_MOUSE (Q9WTK5) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor| KBF2) [Contains: Nuclear factor NF-kappa-B p52 subunit] Length = 899 Score = 35.8 bits (81), Expect = 0.062 Identities = 28/82 (34%), Positives = 35/82 (42%) Frame = -3 Query: 482 AMPPFAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTI 303 A+P F++P G GS G G+ G A G+GG G G ++ Sbjct: 342 ALPTFSQPFGGGSH--------MGGGSGG---------SAGGYGGAGG--------GGSL 376 Query: 302 GFGSQPLVDNSPYDSGAPKHGC 237 GF S L N PY SGA GC Sbjct: 377 GFFSSSLAYN-PYQSGAAPMGC 397
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 33.1 bits (74), Expect = 0.40 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -3 Query: 365 AAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGM 186 ++G G VA QG +T GFG+ P+ + P G+P G + G A +S +G Sbjct: 1948 SSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFG-GVPAFGSAPAFTSPLGS 2006 Query: 185 ALG 177 G Sbjct: 2007 TGG 2009
>MBN_DROME (P52302) Protein lethal(3)malignant blood neoplasm 1 (Mbn(83))| Length = 653 Score = 33.1 bits (74), Expect = 0.40 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = -3 Query: 446 SSNLPFGQEPEGNGNTGVAQPTLP-LPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNS 270 ++N P G P G G+A P P+A G GG+ G G G GS + Sbjct: 414 TANTPTGNVPSNGG--GIAAGKAPGNPQAGGSGGIIGAGAPGGRKVSAGGIGSGSAI--- 468 Query: 269 PYDSGAPKHGCSLLGIGVALGVSSAIG 189 G G G G A+G SAIG Sbjct: 469 ----GGVSGGSKASGNGGAIGSGSAIG 491
>NFKB2_HUMAN (Q00653) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor| KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor NF-kappa-B p52 subunit] Length = 899 Score = 33.1 bits (74), Expect = 0.40 Identities = 27/82 (32%), Positives = 34/82 (41%) Frame = -3 Query: 482 AMPPFAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTI 303 A+P F++P G GS G G+ G A G+GG G G ++ Sbjct: 342 ALPTFSQPFGGGSHM--------GGGSGGAA---------GGYGGAGGGG--------SL 376 Query: 302 GFGSQPLVDNSPYDSGAPKHGC 237 GF L SPY SGA GC Sbjct: 377 GFFPSSLA-YSPYQSGAGPMGC 397
>NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2| Length = 414 Score = 32.0 bits (71), Expect = 0.90 Identities = 24/67 (35%), Positives = 28/67 (41%) Frame = -3 Query: 485 SAMPPFAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQT 306 S+ PP + P G GS FG G GNT ++ P AGFGG Sbjct: 197 SSSPPASAP-GFGSPGPGFGSATSGFGNTSLSSP------PAGFGGA------------- 236 Query: 305 IGFGSQP 285 GFGS P Sbjct: 237 -GFGSGP 242 Score = 31.6 bits (70), Expect = 1.2 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 8/99 (8%) Frame = -3 Query: 455 GHGSSNLPFGQEPEGNGNTGVAQPTLPL--------PEAAGFGGVAGQGHAVEDVGQTIG 300 G GSS F Q G GN + + P A GFG +G GQ G Sbjct: 267 GFGSS--AFAQPSSGFGNPAPSAASFSFAAADSESKPSAGGFGSASGFSFKTATAGQGSG 324 Query: 299 FGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGMA 183 FGS G+ S G G + G SA G A Sbjct: 325 FGS---------GFGSSSGFGSSSGFGSSSGFGSAFGSA 354
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = -3 Query: 455 GHGSSNLPFGQEP-EGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLV 279 G G + GQ P G +G Q GFG + G V G + GFG Sbjct: 412 GRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGYSSGFGHHE-- 469 Query: 278 DNSPYDSGAPKHG 240 +S + SG +HG Sbjct: 470 SSSEHSSGYTQHG 482
>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase| regulatory subunit 5) (PI3-kinase p101 subunit) (PtdIns-3-kinase p101) (p101-PI3K) (Phosphatidylinositol-4,5-bisphosphate 3-kinase regulatory subunit) (PtdIns-3-kinase regulato Length = 877 Score = 31.2 bits (69), Expect = 1.5 Identities = 22/50 (44%), Positives = 26/50 (52%) Frame = +2 Query: 278 PPMVGCQILSSAPRPPLHAPAQRHHRTLPLLAAAEWAVLHRYCRCLLVPV 427 PP V CQ L + PRP +PAQ LP+LA +L YCR PV Sbjct: 627 PPEVLCQSLKAEPRPLEGSPAQ-----LPILA----DMLLYYCRFAARPV 667
>LTK_MOUSE (P08923) Leukocyte tyrosine kinase receptor precursor (EC 2.7.10.1)| Length = 888 Score = 30.8 bits (68), Expect = 2.0 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Frame = -2 Query: 474 ALRGAGWAWKQQPALWTGTRRQRQYRCSTAHSAAARSGRVRWCRWAGACSGGRGADDRIW 295 A G G +++++P G + R T +A GR GA GG G R Sbjct: 228 AAGGGGRSYRRRPD--RGRTQAVPERLETRAAAPGSGGR------GGAAGGGSGWTSRAH 279 Query: 294 QPTIGGQQPIR-----QRCAEAWMQLAW 226 P G+ P + CAEAW L W Sbjct: 280 SPQ-AGRSPREGAEGGEGCAEAWAALRW 306
>ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet membrane| glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen) [Contains: Integrin alpha-IIb heavy chain; Integrin alpha-IIb light chain] Length = 1039 Score = 30.4 bits (67), Expect = 2.6 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = -3 Query: 449 GSSNLPFGQ-EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQP-LVD 276 GS+ P G + +G + VA P +GG +G+G + +GQ+ G S+P V Sbjct: 388 GSAIAPLGDLDRDGYNDIAVAAP---------YGGPSGRGQVLVFLGQSEGLRSRPSQVL 438 Query: 275 NSPYDSGAPKHGCSLLG 225 +SP+ +G+ G SL G Sbjct: 439 DSPFPTGS-AFGFSLRG 454
>SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) Length = 783 Score = 30.0 bits (66), Expect = 3.4 Identities = 32/123 (26%), Positives = 41/123 (33%), Gaps = 18/123 (14%) Frame = +1 Query: 151 QERTHTNQRPRAMPMAELTPSATPMPSKLHPCFG---APLSYGLLSTN-GWLPNPIVXXX 318 Q P A P P P P + PC G APL LL++ LP P++ Sbjct: 658 QRLLQLQHHPAAAPGCSQAPQPAPAPFVIAPCDGPGAAPLPSTLLTSGLPLLPPPLLQTG 717 Query: 319 XXXXXXXXXXXXXXXXXGSGRVGCATPVLPLP------SGSCPKGRL--------LLPCP 456 G+G A P +P P G P G L L+PC Sbjct: 718 ASPVASAAQLLDTHLHIGTGPT--ALPAVPPPRLARLAPGCEPLGLLQGDCEMEDLMPCS 775 Query: 457 TGS 465 G+ Sbjct: 776 LGT 778
>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)| (K6e keratin) (Keratin K6h) Length = 563 Score = 30.0 bits (66), Expect = 3.4 Identities = 25/82 (30%), Positives = 36/82 (43%) Frame = -3 Query: 422 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 243 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 478 EGVGQVNVSVVQSTI----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518 Query: 242 GCSLLGIGVALGVSSAIGMALG 177 G+G+ G SS+ G A+G Sbjct: 519 -----GLGIGGGFSSSSGRAIG 535
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 30.0 bits (66), Expect = 3.4 Identities = 25/75 (33%), Positives = 29/75 (38%) Frame = -3 Query: 473 PFAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFG 294 P A P G N PF G+TG+A+P P P A G AG G G Sbjct: 205 PGARPAGPRPGNNPF----TSGGSTGMARPQAPRPGGAPRPGGAGAPGGPRPQGA----G 256 Query: 293 SQPLVDNSPYDSGAP 249 Q D +P G P Sbjct: 257 GQ---DRAPRPQGGP 268
>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)| (K6d keratin) (Fragment) Length = 384 Score = 30.0 bits (66), Expect = 3.4 Identities = 26/82 (31%), Positives = 36/82 (43%) Frame = -3 Query: 422 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 243 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 299 EGVGQVNVSVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 339 Query: 242 GCSLLGIGVALGVSSAIGMALG 177 G+GV G SS+ G A+G Sbjct: 340 -----GLGVGGGFSSSSGRAIG 356
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 30.0 bits (66), Expect = 3.4 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Frame = -3 Query: 482 AMPPFAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEA----AGFGGVAGQGHAVEDV 315 A P P G N PF GN G+A+P+ P P+ G GG G G + Sbjct: 206 AQRPGGRPGGPRPGNNPF----TSGGNAGMARPSAPRPQGGPRPGGPGGAPGGGPRPQGP 261 Query: 314 GQTIGFGSQPLV--DNSPYDSGAPK 246 G G G +P N P P+ Sbjct: 262 GGQ-GGGPRPQAPGGNRPSPGSMPR 285
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 30.0 bits (66), Expect = 3.4 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = -2 Query: 318 RGADDRIWQPTIGGQQPIRQRCAEAWMQLAWHRSCAGCQLCHWHGPRSLICVRALLRRC 142 RG D + P +G + CA+ + L W + C+L G + +C + LR+C Sbjct: 2 RGGRDPVPVPVLGDYAMV---CAKNGIILQWRYNVKECELSCTGGQQYTVCADSCLRKC 57
>ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1130 Score = 29.6 bits (65), Expect = 4.4 Identities = 18/63 (28%), Positives = 25/63 (39%) Frame = -2 Query: 480 NAALRGAGWAWKQQPALWTGTRRQRQYRCSTAHSAAARSGRVRWCRWAGACSGGRGADDR 301 N ALR +G + + P LW + R +T S R+ R A GA D Sbjct: 670 NGALRESGGSGFRSPHLWKKSSTLTSSRLATGEEEGGGSSSKRFLRSCSASCVPHGAKDT 729 Query: 300 IWQ 292 W+ Sbjct: 730 EWR 732
>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)| (K6c keratin) Length = 563 Score = 29.6 bits (65), Expect = 4.4 Identities = 26/82 (31%), Positives = 36/82 (43%) Frame = -3 Query: 422 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 243 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 478 EGVGQVNISVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518 Query: 242 GCSLLGIGVALGVSSAIGMALG 177 G+GV G SS+ G A+G Sbjct: 519 -----GLGVGGGFSSSSGRAIG 535
>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) Length = 563 Score = 29.6 bits (65), Expect = 4.4 Identities = 26/82 (31%), Positives = 36/82 (43%) Frame = -3 Query: 422 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 243 E G N V Q T+ ++G+GG +G VG +G G S Y G+ Sbjct: 478 EGVGQVNISVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518 Query: 242 GCSLLGIGVALGVSSAIGMALG 177 G+GV G SS+ G A+G Sbjct: 519 -----GLGVGGGFSSSSGRAIG 535
>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33| Length = 498 Score = 29.6 bits (65), Expect = 4.4 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Frame = -3 Query: 461 PVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQP- 285 P G+G + FG G VA T AGFGG G G + G G G + Sbjct: 153 PGGNGGAAGLFGNGGAGGAGGNVASGT------AGFGGAGGAGGLLYGAGGAGGAGGRAG 206 Query: 284 -LVDNSPYDSGAPKHGCSLLGIGVALGV 204 V GA +G L G G A GV Sbjct: 207 GGVGGIGGAGGAGGNGGLLFGAGGAGGV 234
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 29.6 bits (65), Expect = 4.4 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 26/104 (25%) Frame = -3 Query: 473 PFAEPVGHGSSNLPFGQEPE------------GNGNTGVAQPTLPLPEAAGFGGVAGQ-- 336 P A P G G +++ FG G+ + G T P GFGG GQ Sbjct: 1534 PQASPFGGGGNSI-FGSPATAPPASGGSIFGGGSSSGGFGSFTQTTPAQGGFGGGFGQGG 1592 Query: 335 GHAVEDVG---------QTI---GFGSQPLVDNSPYDSGAPKHG 240 G +V G QT GFG++P+ SP +P G Sbjct: 1593 GGSVAQTGFGSPQAPQQQTTTPGGFGAKPVFGGSPAFGASPTFG 1636
>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 29.3 bits (64), Expect = 5.8 Identities = 31/92 (33%), Positives = 40/92 (43%) Frame = -3 Query: 452 HGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDN 273 +G+ N G + GNG G P + EA G GG G G +++ T G G Sbjct: 393 NGTDNSGNGNQTGGNGGPG---PAGGVGEAGGVGGQGGLGESLDGNDGTGGKGGAG--GT 447 Query: 272 SPYDSGAPKHGCSLLGIGVALGVSSAIGMALG 177 + D GA G GIG G SA G+A G Sbjct: 448 AGTDGGAGGAG-GAGGIGETDG--SAGGVATG 476
>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 29.3 bits (64), Expect = 5.8 Identities = 31/92 (33%), Positives = 40/92 (43%) Frame = -3 Query: 452 HGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDN 273 +G+ N G + GNG G P + EA G GG G G +++ T G G Sbjct: 393 NGTDNSGNGNQTGGNGGPG---PAGGVGEAGGVGGQGGLGESLDGNDGTGGKGGAG--GT 447 Query: 272 SPYDSGAPKHGCSLLGIGVALGVSSAIGMALG 177 + D GA G GIG G SA G+A G Sbjct: 448 AGTDGGAGGAG-GAGGIGETDG--SAGGVATG 476
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 29.3 bits (64), Expect = 5.8 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 6/82 (7%) Frame = -3 Query: 476 PPFAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGF---GGVAGQGHAVEDVGQT 306 PP PV S+ PFG P G P+ GF G G + Sbjct: 111 PPVGRPVAPPSNQPPFGGRPSTGPLVGGGS---SFPQPGGFPASGPPGGVPSGPPSGARP 167 Query: 305 IGFGSQPLVD---NSPYDSGAP 249 IGFGS P + + P SG P Sbjct: 168 IGFGSPPPMGPGMSMPPPSGMP 189
>KAPR_MAGGR (O14448) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 390 Score = 29.3 bits (64), Expect = 5.8 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = -3 Query: 470 FAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFG 351 F P G S+ PFG E G G QP L EA G G Sbjct: 6 FTSPFGANSN--PFGSPEERRGVAGSIQPVLEEEEADGIG 43
>FLCN_XENTR (Q5M7Q1) Folliculin| Length = 579 Score = 29.3 bits (64), Expect = 5.8 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 207 CQLCHWHGPRSLICVRAL 154 C C HGPR+L C AL Sbjct: 8 CHFCELHGPRTLFCTEAL 25
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 29.3 bits (64), Expect = 5.8 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 13/81 (16%) Frame = -3 Query: 455 GHGSSNLPFGQEP-EGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVE------------DV 315 G+ F QEP NG + TLPL AG G A VE D Sbjct: 2635 GNDQPGPSFKQEPPSANGKGPFPRRTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDG 2694 Query: 314 GQTIGFGSQPLVDNSPYDSGA 252 G++ G PLV Y GA Sbjct: 2695 GKSSVSGEGPLVIKRVYKGGA 2715
>ITA2B_MOUSE (Q9QUM0) Integrin alpha-IIb precursor (Platelet membrane| glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen) [Contains: Integrin alpha-IIb heavy chain; Integrin alpha-IIb light chain] Length = 1033 Score = 29.3 bits (64), Expect = 5.8 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = -3 Query: 365 AAGFGGVAGQGHAVEDVGQTIGFGSQP-LVDNSPYDSGAPKHGCSLLG 225 AA +GG +GQG + +GQ+ G +P V +SP+ +G+ G SL G Sbjct: 407 AAPYGGPSGQGQVLIFLGQSEGLSPRPSQVLDSPFPTGS-GFGFSLRG 453
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +1 Query: 145 TPQERTHTNQRPRAMPMAELTPS-------ATPMPSKLHPCFGAPLSYGLLSTNGWLPNP 303 TP E T+T+ +++ PS ++ +PS P G+P S+G +T+ P P Sbjct: 243 TPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTP 302
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 28.9 bits (63), Expect = 7.6 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Frame = +2 Query: 188 CQWQS*HPAQLRCQASCIHASAHR-------CRMGCCPPMVGCQILSSAPRPPLHAPA 340 CQ S PA C SC S+ CR CC P+ C + +S+ +P PA Sbjct: 188 CQKSSCQPAC--CTTSCCRPSSSVSLLCRPVCRPACCVPVPSCCVPASSCQPSCCHPA 243
>CLCE_ARATH (Q8GX93) Chloride channel protein CLC-e (AtCLC-e)| Length = 710 Score = 28.9 bits (63), Expect = 7.6 Identities = 18/63 (28%), Positives = 30/63 (47%) Frame = -3 Query: 341 GQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGMALGL*FVC 162 G G+++ G ++ G+ + + +P+ G SLL G A G+SS A+ F Sbjct: 182 GTGNSLGPEGPSVEIGASIAKGVNSLFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFA 241 Query: 161 VRS 153 V S Sbjct: 242 VES 244
>SING_DROME (Q24524) Protein singed| Length = 512 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = -2 Query: 318 RGADDRIWQPTIGG--QQPIRQRCAEAWMQLAWH 223 R DR W + GG Q +RCA+A +L WH Sbjct: 323 RTTQDRYWCLSAGGGIQATGNRRCADALFELIWH 356
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +1 Query: 145 TPQERTHTNQRPRAMPMAELTPS-------ATPMPSKLHPCFGAPLSYGLLSTNGWLPNP 303 TP E T+T+ +++ PS ++ +PS P G+P S+G +T+ P P Sbjct: 243 TPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTP 302
>JHD1_ASHGO (Q75AL5) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 486 Score = 28.5 bits (62), Expect = 9.9 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = +2 Query: 53 LSMIETTLHNTSLADCA-RNNKKKFEKSSAPQRRKSARTQIRDRGPCQWQS*HPAQLRCQ 229 ++ E + H T+ A A + +++ E P+R + R ++R RGP + + + Q Sbjct: 75 IAAFECSAHGTARARLALKGKRRRVEAKEEPERAGTRRYRLRKRGPLDYIALNEGQ---D 131 Query: 230 ASCIHASAHRCRMGCC 277 H HR C Sbjct: 132 VRLRHEHPHRAAFQGC 147
>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7| Length = 471 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +1 Query: 148 PQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAP 258 P + N+ P A+P+ L P P P L FG P Sbjct: 219 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVP 255
>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7| (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor Im 59-kDa subunit) Length = 471 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +1 Query: 148 PQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAP 258 P + N+ P A+P+ L P P P L FG P Sbjct: 219 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVP 255
>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7| Length = 462 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +1 Query: 148 PQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAP 258 P + N+ P A+P+ L P P P L FG P Sbjct: 210 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVP 246
>UBQL3_HUMAN (Q9H347) Ubiquilin-3| Length = 655 Score = 28.5 bits (62), Expect = 9.9 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +1 Query: 151 QERTHTNQRPRA-MPMAELTPSATPMPSKLHPCFGAP-LSYGLLS 279 Q R N+ P A +P +P + P PS ++P G P S GLL+ Sbjct: 94 QHRAMGNECPAASVPTQGPSPGSLPQPSSIYPADGPPAFSLGLLT 138
>PG44_MYCTU (Q50630) Hypothetical PE-PGRS family protein PE_PGRS44| Length = 543 Score = 28.5 bits (62), Expect = 9.9 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -3 Query: 458 VGHGSSNLPFGQEPEGNGNTGV---AQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFG 294 +G G + P G GNG G A +L G GG G G + EDVG T G G Sbjct: 222 IGWGGNGGPGGFAAFGNGGAGGNGGASGSL-----FGVGGAGGVGGSSEDVGGTGGAG 274
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 28.5 bits (62), Expect = 9.9 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 15/116 (12%) Frame = +1 Query: 139 ATTPQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAPLSY---------------GL 273 A + RT ++PRA + S +P PS P PLS+ GL Sbjct: 342 AAAAEGRTPPARQPRAAQEPPIVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPGGGGL 401 Query: 274 LSTNGWLPNPIVXXXXXXXXXXXXXXXXXXXXGSGRVGCATPVLPLPSGSCPKGRL 441 ++G P + G A P +P+ + P+ R+ Sbjct: 402 PQSSGRAARPRAAVAPRVRSPPRAAAAPVVSASADAAGPAPPAVPVDAHRAPRSRM 457
>IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B (eIF-5B)| (Translation initiation factor IF-2) Length = 1002 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 151 QERTHTNQRPRAMPMAELTPSATPMPSKLHP 243 +ER H ++ ++ P A TP+ATP PS P Sbjct: 370 EERAHVHEVAKSTPAA--TPAATPTPSSASP 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,835,995 Number of Sequences: 219361 Number of extensions: 1864226 Number of successful extensions: 7184 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 6603 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7162 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
