>NPS12_ARATH (Q9LNH6) Novel plant SNARE 12 (AtNPSN12)|
          Length = 265

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 51/63 (80%), Positives = 55/63 (87%)
 Frame = -3

Query: 516 SQMVKEIGRQVATDKCIMAFLFLIVCGVIAIIVVKIVNPHNKSIPDIPGLXXXXXXAQNR 337
           SQ+VKEIGRQVATDKCIMAFLFLIVCGVIAII+VKIVNP+NK I DIPGL      AQ+R
Sbjct: 202 SQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGL---APPAQSR 258

Query: 336 KLL 328
           KLL
Sbjct: 259 KLL 261

>NPS13_ARATH (Q9LRP1) Novel plant SNARE 13 (AtNPSN13)|
          Length = 269

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 49/63 (77%), Positives = 54/63 (85%)
 Frame = -3

Query: 516 SQMVKEIGRQVATDKCIMAFLFLIVCGVIAIIVVKIVNPHNKSIPDIPGLXXXXXXAQNR 337
           SQ+VKEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNP+NK I DIPGL      AQ+R
Sbjct: 202 SQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGL---APPAQSR 258

Query: 336 KLL 328
           KLL
Sbjct: 259 KLL 261

>NPS11_ARATH (Q944A9) Novel plant SNARE 11 (AtNPSN11)|
          Length = 265

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 47/63 (74%), Positives = 53/63 (84%)
 Frame = -3

Query: 516 SQMVKEIGRQVATDKCIMAFLFLIVCGVIAIIVVKIVNPHNKSIPDIPGLXXXXXXAQNR 337
           S++VKEIGRQVATDKCIMAFLFLIV GVIAII+VKIVNP+NK I DIPG+      A NR
Sbjct: 200 SKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGV-GLAPPAMNR 258

Query: 336 KLL 328
           +LL
Sbjct: 259 RLL 261

>LRC56_HUMAN (Q8IYG6) Leucine-rich repeat-containing protein 56|
          Length = 542

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 424 HCCQDRQPA*QKHTRHPGTGTSCTSCAEPETAFHRCFPNALNIRKWKSRAVQ 269
           H CQ R+P  Q     PG   + TS  EP+ A    F     +R W+   V+
Sbjct: 343 HQCQAREPPEQLPQHRPGDPAASTSTPEPDPADSSDFLALAGLRAWREHGVR 394

>ENH5_HUMAN (P61549) HERV-H_19p13.11 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) (Env protein RGH1) (Env
           protein RTLV-H) [Includes: Surface protein (SU)]
          Length = 369

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +1

Query: 91  SPLTHVHNQEGQAI*TPHDRSATNNPKLKAIKENYIRG---*CTSKHQW 228
           SP TH+    G       D+ + N  KLK I+ NY  G    C S H W
Sbjct: 179 SPTTHITETTGAFQLHITDKPSINTGKLKKIRSNYCLGRHLPCISLHPW 227

>LRP8_MOUSE (Q924X6) Low-density lipoprotein receptor-related protein 8|
           precursor (Apolipoprotein E receptor 2)
          Length = 996

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
 Frame = -2

Query: 463 GISILDSLWCDCHHCCQDRQPA*QKHTRHPGTGTSCTSCAEPETAFHRCFPNALNIRKW- 287
           G  I +   CD    C+DR     +     G GT+ T  A   TA   C         W 
Sbjct: 211 GTCIPERWVCDRQFDCEDRSDEAAELCGRAGQGTTATPAACAPTAQFTCRSGECIHLGWR 270

Query: 286 ---------KSRAVQVSLAEAKTHDVNCSIGACLYIIPVCN 191
                    KS     S    + ++  C  G C+  I  CN
Sbjct: 271 CDGDRDCKDKSDEADCSPGPCRENEFQCGDGTCVLAIKRCN 311

>NID2_MOUSE (O88322) Nidogen-2 precursor (NID-2) (Entactin-2)|
          Length = 1403

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 373 GTGTSCTSCAEPETAFHRCFPNAL 302
           G G SC    E  T FHRC PN++
Sbjct: 817 GDGRSCVDVNECATGFHRCGPNSV 840

>UGTAP_CAEBR (Q61JN8) UGA suppressor tRNA-associated protein homolog|
          Length = 482

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 51  KVYEQRIIALLSLVTTNACTQPRRPGNLNTTRPKC 155
           ++ EQR   LL ++TT +C  PR P N+      C
Sbjct: 201 RIVEQRGEELLCVMTTTSCFAPRSPDNIEAISAIC 235

>ENH2_HUMAN (Q9N2J9) HERV-H_3q26 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein HERV-H/p60)
           (HERV-H/env60) [Contains: Surface protein (SU);
           Transmembrane protein (TM)]
          Length = 563

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +1

Query: 91  SPLTHVHNQEGQAI*TPHDRSATNNPKLKAIKENYIRG---*CTSKHQW 228
           SP TH+    G       D+ + N  KLK +  NY  G    C S H W
Sbjct: 193 SPTTHITETNGAFQLHITDKPSINTDKLKNVSSNYCLGRHLSCISLHPW 241

>ENH4_HUMAN (Q96L62) HERV-H_1q41 provirus ancestral Env polyprotein precursor|
           (Envelope polyprotein) (Env protein HERV-Hcl.7)
           [Contains: Surface protein (SU); Transmembrane protein
           (TM)]
          Length = 402

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +1

Query: 91  SPLTHVHNQEGQAI*TPHDRSATNNPKLKAIKENYIRG---*CTSKHQWNS 234
           SP TH+    G       D+ + N  KLK I  NY  G    C S H W S
Sbjct: 193 SPTTHITETIGAFQLHITDKPSINTDKLKNISSNYCLGRHVPCISLHPWLS 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,887,007
Number of Sequences: 219361
Number of extensions: 1526731
Number of successful extensions: 3463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)