ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39g07 |
|---|---|
| Clone Library Name | barley_pub |
>PNS1_ASPFU (Q4WYG7) Protein pns1| Length = 537 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -2 Query: 285 WLAWAPSPGWWPRGSSRGARPGWRQCCTY 199 W W+ SP PRGS+RGA +R+ TY Sbjct: 311 WYFWSQSPNGMPRGSTRGA---FRRATTY 336
>ODP2_RHIME (Q9R9N3) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 447 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +3 Query: 213 ASILASPL*KSPAATSPAMAPRPATAVALSPLAPDSDCLAGG 338 A + +P K A T+PA AP PA A A AP S A G Sbjct: 95 AGAVPAPKPKETAETAPAAAPAPAAAPAPQAAAPASPAPADG 136
>SYC_PYRAE (Q8ZYD8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 474 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/32 (37%), Positives = 14/32 (43%) Frame = -2 Query: 285 WLAWAPSPGWWPRGSSRGARPGWRQCCTYVCT 190 W +W P WW G RPGW C + T Sbjct: 190 WKSWTPGEPWWNSPWCPG-RPGWHLECVVMST 220
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +3 Query: 153 TDTMS*STTCNLTYIRTYSTASILASPL*KSPAATSPAMAPRPATAVALSP 305 T ++ +TT +T +T +I +P +P SPA P PATA A +P Sbjct: 791 TAAVAAATTAAITAAAAAATTAIQVAPATSAPVP-SPASIPAPATAQASAP 840
>SYC_SULSO (Q97WE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 470 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 285 WLAWAPSPGWWPRGSSRGARPGWRQCCTYVCT 190 W AW P +W +G RPGW C+ + T Sbjct: 184 WKAWKPGEPYWESPWGKG-RPGWHIECSTMST 214
>SYC_SULAC (Q4JCA6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 469 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -2 Query: 285 WLAWAPSPGWWPRGSSRGARPGWRQCCTYVCT 190 W AW P +W +G RPGW C+ + T Sbjct: 183 WKAWKPGEPYWESPWGKG-RPGWHIECSTMST 213
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = +2 Query: 134 PQQTRND*HDELIDDMQPNVHTYVQHCLHPGLAP---LEEPRGHQPGDGAQASHRRGPEP 304 PQQ HD + Q N + Y +P AP L PRG PG GA A+ P P Sbjct: 198 PQQNS---HDHGFPNHQYNSY-YPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPP 253 Query: 305 A 307 + Sbjct: 254 S 254
>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (FAP-B) Length = 325 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 207 STASILASPL*KSPAATSPAMAPRPATAVALSPLAP 314 S ++A P +PA PA AP PA VA +P P Sbjct: 282 SIRPLVAPPPAPAPAPAEPAPAPAPAGEVAPTPTTP 317
>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor| (Fibronectin attachment protein) (45/47 kDa antigen) (FAP-B) Length = 325 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 207 STASILASPL*KSPAATSPAMAPRPATAVALSPLAP 314 S ++A P +PA PA AP PA VA +P P Sbjct: 282 SIRPLVAPPPAPAPAPAEPAPAPAPAGEVAPTPTTP 317
>ODP2_RALEU (Q59098) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 553 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 243 SPAATSPAMAPRPATAVALSPLA 311 +PAA +PA AP PA A A +P A Sbjct: 95 APAAAAPAPAPAPAAAPAAAPAA 117
>Y177_BACHD (Q9KGC7) Hypothetical protein BH0177| Length = 272 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -2 Query: 102 LLLWLAVTVVGYLGFYVMIFFYITLMSLSYIFL 4 LLLWL + ++G L + + I+ L+SL ++FL Sbjct: 160 LLLWLLLFLLGLLFYVIFIWTKSPLVSLLFVFL 192
>PPNK_BACTN (Q8A0V4) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 302 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Frame = +3 Query: 141 KRETTDTMS*STTCNLTYIRTY-STASILASPL*KSPAATS---PAMAPRPATAVALSPL 308 KR+++ +S T N Y+ TY + ++A+P + + S P + P T +A++P+ Sbjct: 163 KRDSSSMISIRTAINGAYLNTYQADGLVIATPTGSTAYSLSVGGPIIVPHSNT-IAITPV 221 Query: 309 APDS 320 AP S Sbjct: 222 APHS 225
>TENS_CHICK (Q04205) Tensin| Length = 1744 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/62 (20%), Positives = 22/62 (35%) Frame = +3 Query: 108 PLRQKKDGLLNKRETTDTMS*STTCNLTYIRTYSTASILASPL*KSPAATSPAMAPRPAT 287 P+ +KKD TD + CN+ +I + S+ A + P P Sbjct: 1584 PMEEKKDAASTTNSATDLLKQGAACNVLFINSVEMESLTGPQAISKAVAETLVADPTPTA 1643 Query: 288 AV 293 + Sbjct: 1644 TI 1645
>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing| protein 6) (Fragment) Length = 608 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +3 Query: 186 LTYIRTYSTASILASPL*KSPAATSPAMAPRPATAVALSPLAPDSDCL 329 L+ RT + LA L P + P AP A AVA PL P CL Sbjct: 106 LSRTRTLTETPALAG-LSALPVSQLPVFAPLAAAAVAAEPLPPKELCL 152
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Frame = +3 Query: 198 RTYSTASILASPL*KSPAATSPAMAPRPATA------VALSPLAPDSDCLAG 335 R ST S+ PL P + +PA +P P+ A + PL P CL G Sbjct: 294 RLPSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKGSIQDRPLPPPPPCLPG 345
>THTR_METTH (O26719) Putative thiosulfate sulfurtransferase (EC 2.8.1.1)| Length = 286 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +2 Query: 125 RW-PPQQTRND*HDELIDDMQPNVHTYV-QHC-----LHPGLAPLEEPRGHQP 262 RW P+ + D I D QPN+H Y+ +H L+ GL EPRG P Sbjct: 12 RWVTPEWLMENMEDVAIIDCQPNIHDYILEHIPGAVYLNEGL--FREPRGKAP 62
>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing| protein A) Length = 361 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Frame = +3 Query: 231 PL*KSPAATSPAMAPRPATAVALSP-------LAPDSDCLAGG 338 P KSPAA+ AP PA +A SP AP S AGG Sbjct: 29 PAPKSPAASGAPQAPAPAALLAGSPGGDAAPGPAPASSAPAGG 71
>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing| protein A) (Y-box protein 3) Length = 361 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 7/43 (16%) Frame = +3 Query: 231 PL*KSPAATSPAMAPRPATAVALSP-------LAPDSDCLAGG 338 P KSPAA+ AP PA +A SP AP S AGG Sbjct: 29 PAPKSPAASGAPQAPAPAALLAGSPGGDAAPGPAPASSAPAGG 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,012,915 Number of Sequences: 219361 Number of extensions: 891157 Number of successful extensions: 4064 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4039 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
