>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 480

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = -3

Query: 486 FDGRNVVDAEKLREIGFIVYSIGKPLDGWLKDMPAVA 376
           FDGRN+VDA+KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct: 444 FDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480

>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja|
           UDPGD intein]
          Length = 895

 Score = 36.2 bits (82), Expect = 0.048
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = -3

Query: 486 FDGRNVVDAEKLREIGFIVYSIGK 415
           FDGRN++D EK++++GF  Y +G+
Sbjct: 872 FDGRNILDVEKIKKLGFKYYGVGR 895

>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 325 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 453
           D A+     P DV+ E    +G  VL+PP    AD VD E  +PE
Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845

>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless)
          Length = 476

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -3

Query: 486 FDGRNVVDAEKLREIGFIVYSIGK 415
           FDGR ++D E+L++IGF V +IGK
Sbjct: 436 FDGRKILDHERLQQIGFHVQTIGK 459

>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva
           protein 4)
          Length = 481

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 486 FDGRNVVDAEKLREIGFIVYSIGKPLD 406
           FDGR ++D + LREIGF  ++IG   D
Sbjct: 444 FDGRLILDQKALREIGFRTFAIGTSPD 470

>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)|
          Length = 302

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 316 APIDDAAGRQTRPADVESE-LGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAA 480
           A  D AA  ++ PAD E E + +    +E  ++ LAD V+ E +  E   VDD AA
Sbjct: 229 ADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDDEAA 284

>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid
           biosynthesis protein tuaD)
          Length = 461

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 483 DGRNVVDAEKLREIGFIVYSIGKP 412
           DGRN+   E+++  G+I +SIG+P
Sbjct: 409 DGRNLFSLEEMQAAGYIYHSIGRP 432

>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 453

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 483 DGRNVVDAEKLREIGFIVYSIGKPLDGWLK 394
           DGRN+    ++ E+GFI   IG+P  G  K
Sbjct: 420 DGRNLYAPARMAELGFIYQGIGRPRAGHCK 449

>LEU1_HAEIN (P43861) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 515

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 25  ISAKQLRNQPATKFIGYK--GEKTSSDSTGGRG 117
           +SA   +  PAT F+  K  GEK S+ S GG G
Sbjct: 396 LSAHSTKEYPATAFVQLKLDGEKLSTSSIGGNG 428

>LTRA_LACLC (P0A3U1) Group II intron-encoded protein ltrA [Includes:|
           Reverse-transcriptase (EC 2.7.7.49); RNA maturase (EC
           3.1.-.-); DNA endonuclease (EC 3.1.-.-)]
          Length = 599

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 18  CNNFSKTVEEPTGYKVHRIQRGKNLLGQHRGPRSLIIR 131
           C     T +E T Y++H + + KNL G+ +   ++I +
Sbjct: 542 CCELCGTSDENTSYEIHHVNKVKNLKGKEKWEMAMIAK 579

>LTRA_LACLA (P0A3U0) Group II intron-encoded protein ltrA [Includes:|
           Reverse-transcriptase (EC 2.7.7.49); RNA maturase (EC
           3.1.-.-); DNA endonuclease (EC 3.1.-.-)]
          Length = 599

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 18  CNNFSKTVEEPTGYKVHRIQRGKNLLGQHRGPRSLIIR 131
           C     T +E T Y++H + + KNL G+ +   ++I +
Sbjct: 542 CCELCGTSDENTSYEIHHVNKVKNLKGKEKWEMAMIAK 579

>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein|
           homolog)
          Length = 1320

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 386 PPSPNSLSTSAGLVCLPAASSIGAAGRQGKEG 291
           PP PNS  ++ G   +PAA   GA   Q ++G
Sbjct: 717 PPVPNSTVSARGQRSVPAAGKAGAPATQAQKG 748

>DDX58_MOUSE (Q6Q899) Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)|
           (DEAD-box protein 58) (Retinoic acid-inducible gene 1
           protein) (RIG-1) (RIG-I)
          Length = 926

 Score = 24.6 bits (52), Expect(2) = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 137 CRSYNQTPRPP--VLSEEVFSPLYPMNF 60
           C++ +Q P PP    S  + SPL P N+
Sbjct: 220 CQNLSQNPGPPSEASSNNLHSPLKPRNY 247



 Score = 22.3 bits (46), Expect(2) = 9.2
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = -3

Query: 396 KDMPAVA*FALHVGRPRLSAGGVVDRGCRKAGEGRKEDEXXXXXXXXPFFIVCVLQEKHQ 217
           ++ P V   AL     + S   +VD+G ++A     ED+         F     +QE+ +
Sbjct: 165 ENWPKVLQLALEKDNSKFSELWIVDKGFKRAESKADEDDGAEASSIQIF-----IQEEPE 219

Query: 216 QQFLAR 199
            Q L++
Sbjct: 220 CQNLSQ 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,661,670
Number of Sequences: 219361
Number of extensions: 1348699
Number of successful extensions: 4260
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4258
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)