ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 p... 42 9e-04
2HRH1_BOVIN (P30546) Histamine H1 receptor 31 2.0
3HRH1_PONPY (Q9N2B0) Histamine H1 receptor 30 2.6
4HRH1_PANTR (Q9N2B2) Histamine H1 receptor 30 2.6
5HRH1_HUMAN (P35367) Histamine H1 receptor 30 2.6
6HRH1_GORGO (Q9N2B1) Histamine H1 receptor 30 2.6
7HRH1_MOUSE (P70174) Histamine H1 receptor 30 2.6
8HRH1_RAT (P31390) Histamine H1 receptor 30 3.3
9TRMU_BACHD (Q9KDF2) Probable tRNA (5-methylaminomethyl-2-thiouri... 30 3.3
10MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2) 30 4.4
11CTND2_HUMAN (Q9UQB3) Catenin delta-2 (Delta-catenin) (Neural pla... 29 5.7
12HRH1_CAVPO (P31389) Histamine H1 receptor 29 7.5

>AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 precursor|
          Length = 252

 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 482 QLPKGMESVNHIWQVGSAVANGVPAKHAFAQENL 381
           ++P G +SVN +WQ+G  V NG P  H F  +NL
Sbjct: 150 KVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNL 183



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>HRH1_BOVIN (P30546) Histamine H1 receptor|
          Length = 491

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FII WIP +IF +++ FC       CC
Sbjct: 426 AAFIICWIPYFIFFMVIAFC-----ESCC 449



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>HRH1_PONPY (Q9N2B0) Histamine H1 receptor|
          Length = 487

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FI+ WIP +IF +++ FC      +CC
Sbjct: 422 AAFILCWIPYFIFFMVIAFC-----KNCC 445



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>HRH1_PANTR (Q9N2B2) Histamine H1 receptor|
          Length = 487

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FI+ WIP +IF +++ FC      +CC
Sbjct: 422 AAFILCWIPYFIFFMVIAFC-----KNCC 445



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>HRH1_HUMAN (P35367) Histamine H1 receptor|
          Length = 487

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FI+ WIP +IF +++ FC      +CC
Sbjct: 422 AAFILCWIPYFIFFMVIAFC-----KNCC 445



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>HRH1_GORGO (Q9N2B1) Histamine H1 receptor|
          Length = 487

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FI+ WIP +IF +++ FC      +CC
Sbjct: 422 AAFILCWIPYFIFFMVIAFC-----KNCC 445



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>HRH1_MOUSE (P70174) Histamine H1 receptor|
          Length = 488

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FI+ WIP +IF +++ FC     + CC
Sbjct: 423 AAFILCWIPYFIFFMVIAFC-----NSCC 446



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>HRH1_RAT (P31390) Histamine H1 receptor|
          Length = 486

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFCLGWNKSDCC 7
           A+FI+ WIP +IF +++ FC       CC
Sbjct: 421 AAFILCWIPYFIFFMVIAFC-----KSCC 444



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>TRMU_BACHD (Q9KDF2) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 371

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 246 EEVIAGGSGVHHPRLGSGGHRASRIGWFL 160
           + ++  G G HHP L S G RA ++ W L
Sbjct: 266 KNILYVGQGFHHPGLYSEGLRAIKVNWIL 294



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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 218  TPLPPAMTSSHRTAWATTAPPSPC 289
            TPLPP++T    + ++TT P +PC
Sbjct: 1759 TPLPPSITPPTFSPFSTTTPTTPC 1782



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>CTND2_HUMAN (Q9UQB3) Catenin delta-2 (Delta-catenin) (Neural|
           plakophilin-related ARM-repeat protein) (NPRAP)
           (Neurojungin) (GT24)
          Length = 1225

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 221 PLPPAMTSSHRTAWATTAPPSPCYQPRRTNHRH 319
           PLPPA T ++RT+ A ++P       +RT  +H
Sbjct: 444 PLPPAHTGTYRTSTAPSSPGVDSVPLQRTGSQH 476



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>HRH1_CAVPO (P31389) Histamine H1 receptor|
          Length = 488

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 93  ASFIISWIPIYIFPVLVYFC 34
           A+FI+ WIP ++F +++ FC
Sbjct: 423 AAFILCWIPYFVFFMVIAFC 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,063,929
Number of Sequences: 219361
Number of extensions: 1016277
Number of successful extensions: 3642
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3633
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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