ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39g03 |
|---|---|
| Clone Library Name | barley_pub |
>HAL3A_ARATH (Q9SWE5) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)| (Halotolerance protein Hal3a) (AtHal3a) (PPCDC) (AtCoaC) Length = 209 Score = 103 bits (256), Expect = 4e-22 Identities = 46/65 (70%), Positives = 56/65 (86%) Frame = -2 Query: 540 FAAPAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVRL 361 F APAMNT MWNNPFT RH+ ++++LGI+L+PP KRLACGDYGNGAMAEPS I++TVRL Sbjct: 136 FVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIYSTVRL 195 Query: 360 ACKSQ 346 +SQ Sbjct: 196 FWESQ 200
>HAL3B_ARATH (P94063) Probable phosphopantothenoylcysteine decarboxylase (EC| 4.1.1.36) (Halotolerance protein Hal3b) (AtHal3b) Length = 201 Score = 101 bits (252), Expect = 1e-21 Identities = 45/65 (69%), Positives = 55/65 (84%) Frame = -2 Query: 540 FAAPAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVRL 361 F APAMNT MWNNPFT RH+ +++LGI+L+PP K+LACGDYGNGAMAEPS I++TVRL Sbjct: 128 FVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIYSTVRL 187 Query: 360 ACKSQ 346 +SQ Sbjct: 188 FWESQ 192
>COAC_HUMAN (Q96CD2) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)| (PPC-DC) (CoaC) Length = 204 Score = 54.7 bits (130), Expect = 2e-07 Identities = 25/56 (44%), Positives = 33/56 (58%) Frame = -2 Query: 531 PAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVR 364 PAMNT MW +P TA+ ++ + G +P K+L CGD G GAMAE I V+ Sbjct: 137 PAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK 192
>COAC_MOUSE (Q8BZB2) Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36)| (PPC-DC) (CoaC) Length = 204 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/56 (44%), Positives = 33/56 (58%) Frame = -2 Query: 531 PAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVR 364 PAMNT MW +P TA+ + + G +P +K+L CGD G GAMAE I V+ Sbjct: 137 PAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQ 192
>COABC_HAEIN (P44953) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 400 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = -2 Query: 540 FAAPAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVR- 364 F APAMN M++ T +++ T+ GI L+ P + ACGD G G M+EP +I T + Sbjct: 119 FLAPAMNQQMYHQSITQQNLTTLQTRGIELIGPNSGFQACGDMGKGRMSEPEEIFTALSD 178 Query: 363 -LACKSQTFGTGISPAHPSSGHPV*PMR*WSLSSGG 259 + K G +S + + P+R S S G Sbjct: 179 FFSQKQDLQGLNVSITAGPTREAIDPVRYISNHSSG 214
>COAC_STRMU (Q54433) Probable phosphopantothenoylcysteine decarboxylase (EC| 4.1.1.36) (PPCDC) Length = 179 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/50 (46%), Positives = 32/50 (64%) Frame = -2 Query: 540 FAAPAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAE 391 F APAMNT M+ NP T +I + + G + P + LACGD G+GA+A+ Sbjct: 118 FFAPAMNTKMYENPITQSNIALLKKFGYKEIQPKSSVLACGDVGSGALAD 167
>YKI8_YEAST (P36076) Hypothetical protein YKL088w| Length = 571 Score = 48.9 bits (115), Expect = 9e-06 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQ--LGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVR 364 APAMNTFM+ NP T +H+ ++ Q I ++ P K L CGD G G M E + I VR Sbjct: 439 APAMNTFMYINPMTKKHLTSLVQDYPFIQVLKPVEKVLICGDIGMGGMREWTDIVEIVR 497
>COABC_VIBVY (Q7MPS9) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 401 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 +PAMN M+ N T +I T+++ G+ + P ACGD G G M EP Q+ Sbjct: 122 SPAMNQQMYRNVATQENIATLSRRGMEIWGPAAGEQACGDVGPGRMLEPMQL 173
>COABC_VIBVU (Q8DDX8) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 401 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 +PAMN M+ N T +I T+++ G+ + P ACGD G G M EP Q+ Sbjct: 122 SPAMNQQMYRNVATQENIATLSRRGMEIWGPAAGEQACGDVGPGRMLEPMQL 173
>COABC_MYCTU (P67733) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 418 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/58 (37%), Positives = 33/58 (56%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVRL 361 APAM+T MW +P T ++ T+ + G ++ P T RL D G G + E +I T +L Sbjct: 122 APAMHTEMWLHPATVDNVATLRRRGAVVLEPATGRLTGADSGAGRLPEAEEITTLAQL 179
>COABC_MYCBO (P67734) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 418 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/58 (37%), Positives = 33/58 (56%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVRL 361 APAM+T MW +P T ++ T+ + G ++ P T RL D G G + E +I T +L Sbjct: 122 APAMHTEMWLHPATVDNVATLRRRGAVVLEPATGRLTGADSGAGRLPEAEEITTLAQL 179
>COABC_VIBPA (Q87T89) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 399 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/52 (40%), Positives = 30/52 (57%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 +PAMN M+ N T +I T+ + G+++ P ACGD G G M EP Q+ Sbjct: 122 SPAMNQQMYRNIATQENIATLARRGMNIWGPAAGEQACGDVGPGRMLEPMQL 173
>COABC_VIBF1 (Q5E8M6) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 409 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 +PAMN M++N T +I T+ + G+ + P + ACGD G G M EP ++ Sbjct: 122 SPAMNQQMYSNIATQENIATLARRGMHIWGPAAGQQACGDVGMGRMLEPMEL 173
>COABC_VIBCH (Q9KVD1) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 399 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 APAMN M+ N T +++T+ + G P ACGD G G M EP ++ Sbjct: 122 APAMNQQMYRNIATQENLQTLIRRGYLTWGPAAGEQACGDVGPGRMLEPMEL 173
>COABC_SYNY3 (P73881) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 402 Score = 37.7 bits (86), Expect = 0.021 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 534 APAMNTFMWNNPFTARHIETM-NQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 APAMNT MW R+++ + L+ P LAC G G +AEP+QI Sbjct: 121 APAMNTDMWEQEAVQRNLQQLLGDRRYHLLAPNGGLLACDRRGVGRLAEPAQI 173
>COABC_ECOLI (P0ABQ0) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 405 Score = 36.2 bits (82), Expect = 0.060 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -2 Query: 531 PAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 PAMN M+ T ++E + G+ + P + ACGD G G M +P I Sbjct: 121 PAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRMLDPLTI 171
>COABC_ECOL6 (P0ABQ1) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 405 Score = 36.2 bits (82), Expect = 0.060 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -2 Query: 531 PAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 PAMN M+ T ++E + G+ + P + ACGD G G M +P I Sbjct: 121 PAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRMLDPLTI 171
>PKSM_BACSU (P40872) Putative polyketide synthase pksM| Length = 4262 Score = 33.1 bits (74), Expect = 0.51 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = -2 Query: 525 MNTFMWNNPFTAR---HIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQIHTTVRLAC 355 MN W N A +++ MNQ+G+ L+ P A +G +++ + IHTT +A Sbjct: 1696 MNWGYWGNSEAAEDEHYVQLMNQIGLGLIEPAEAMKALEALLSGPVSQTAFIHTTKPVAV 1755 Query: 354 K--SQTFGTGISPAHPSS 307 + +Q + P PS+ Sbjct: 1756 EGVNQNEFITLYPEQPSA 1773
>EPID_STAEP (P30197) Epidermin decarboxylase (EC 4.1.1.-) (Epidermin-modifying| enzyme epiD) Length = 181 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = -2 Query: 540 FAAPAMNTFMWNNPFTARHIETMNQLGISLVPPTTKR---LACGDYGN 406 F P MN MW NPF ++I+ + + + P + ++ G Y N Sbjct: 111 FIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKN 158
>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein| Length = 1259 Score = 30.0 bits (66), Expect = 4.3 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 529 SHEHLHVEQPIHGAPHRDHEPTGHL 455 SH H H P+ P R+HE GHL Sbjct: 1125 SHHHHHHHHPLSVDPRREHERGGHL 1149
>PEPB_HAEI8 (Q4QM33) Peptidase B (EC 3.4.11.23) (Aminopeptidase B)| Length = 434 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 432 RLACGDYGNGAMAEPSQIHTTVRLACKSQTF 340 R+ CGD+ G + EP+Q T V+LA ++ F Sbjct: 101 RIECGDFVRGIINEPAQSLTPVKLAERAAEF 131
>COABC_BORBU (O51752) Coenzyme A biosynthesis bifunctional protein coaBC| (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (EC 6.3.2.5) (Phosp Length = 390 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/54 (25%), Positives = 23/54 (42%) Frame = -2 Query: 540 FAAPAMNTFMWNNPFTARHIETMNQLGISLVPPTTKRLACGDYGNGAMAEPSQI 379 + A AMN M++NP +I+ + + P LAC G + +I Sbjct: 117 YFAIAMNNIMYSNPILKENIKKLKTYNYKFIEPDKGFLACSSNALGRLKNEDKI 170
>5NT1B_MOUSE (Q91YE9) Cytosolic 5'-nucleotidase 1B (EC 3.1.3.5) (Cytosolic| 5'-nucleotidase IB) (cN1B) (cN-IB) (Autoimmune infertility-related protein) Length = 573 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +3 Query: 36 EFRTTLFIAGATAIPQSLRLRPNVYYHITNKLIHIPQVRYFG 161 E LF+AGA P +++RP++++ +++ HI + FG Sbjct: 519 EIDEALFLAGAPKGPILVKIRPHIFF--DDQMFHIESAQKFG 558
>RL4_BORPE (Q7VTD2) 50S ribosomal protein L4| Length = 205 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 207 TFSNPDGVGGIEKPRVLDHLKIVTITASARRGDRWKGARAK 329 TFS PD + G + L H +V A+AR G+R + RA+ Sbjct: 14 TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAE 54
>RL4_BORPA (Q7W2F5) 50S ribosomal protein L4| Length = 205 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 207 TFSNPDGVGGIEKPRVLDHLKIVTITASARRGDRWKGARAK 329 TFS PD + G + L H +V A+AR G+R + RA+ Sbjct: 14 TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAE 54
>RL4_BORBR (Q7WRC4) 50S ribosomal protein L4| Length = 205 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 207 TFSNPDGVGGIEKPRVLDHLKIVTITASARRGDRWKGARAK 329 TFS PD + G + L H +V A+AR G+R + RA+ Sbjct: 14 TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAE 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,317,859 Number of Sequences: 219361 Number of extensions: 1778050 Number of successful extensions: 4458 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4448 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
