>gb|BT009136.1| Triticum aestivum clone wl1n.pk0039.e3:fis, full insert mRNA
           sequence
          Length = 1164

 Score =  113 bits (57), Expect = 6e-22
 Identities = 153/185 (82%)
 Strand = Plus / Minus

                                                                       
Query: 347 tgcgacttgcacgcgagcctcacggtcgtgtggatctgcgagggctcagccatcgcgccg 406
           |||| ||||||||||||||||||||  || |||||||||||||  || ||||| ||||||
Sbjct: 689 tgcgtcttgcacgcgagcctcacggaagtatggatctgcgaggtttcggccattgcgccg 630

                                                                       
Query: 407 ttcccgtagtcgccgcaggccagccgtttcgtggtgggcgggaccagggagatgcccagt 466
           |||||||| ||||| |||||||||| ||| ||    || |||| || ||  |||||||||
Sbjct: 629 ttcccgtaatcgccacaggccagccttttggtaactggggggatcaaggctatgcccagt 570

                                                                       
Query: 467 tggttcatggtctcgatgtggcgcgccgtgaatgggttgttccacatgaaggtgttcatg 526
           ||||| || || |  |  || ||| |||||||||||||||||||||| || |||||||||
Sbjct: 569 tggttgattgtgtgaagatgccgctccgtgaatgggttgttccacattaacgtgttcatg 510

                
Query: 527 gctgg 531
           |||||
Sbjct: 509 gctgg 505

>gb|AY105313.1| Zea mays PCO119881 mRNA sequence
          Length = 1165

 Score =  113 bits (57), Expect = 6e-22
 Identities = 153/185 (82%)
 Strand = Plus / Minus

                                                                       
Query: 347 tgcgacttgcacgcgagcctcacggtcgtgtggatctgcgagggctcagccatcgcgccg 406
           |||| ||||||||||||||||||||  || |||||||||||||  || ||||| ||||||
Sbjct: 755 tgcgtcttgcacgcgagcctcacggaagtatggatctgcgaggtttcggccattgcgccg 696

                                                                       
Query: 407 ttcccgtagtcgccgcaggccagccgtttcgtggtgggcgggaccagggagatgcccagt 466
           |||||||| ||||| |||||||||| ||| ||    || |||| || ||  |||||||||
Sbjct: 695 ttcccgtaatcgccacaggccagccttttggtaactggggggatcaaggctatgcccagt 636

                                                                       
Query: 467 tggttcatggtctcgatgtggcgcgccgtgaatgggttgttccacatgaaggtgttcatg 526
           ||||| || || |  |  || ||| |||||||||||||||||||||| || |||||||||
Sbjct: 635 tggttgattgtgtgaagatgccgctccgtgaatgggttgttccacattaacgtgttcatg 576

                
Query: 527 gctgg 531
           |||||
Sbjct: 575 gctgg 571

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                     
Query: 494     gtgaatgggttgttccacatgaaggtgttcatggctgg 531
               ||||| |||||||||||||||||||||||||| |||||
Sbjct: 5066248 gtgaacgggttgttccacatgaaggtgttcatagctgg 5066285

>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1147_D11
          Length = 138444

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 494   gtgaatgggttgttccacatgaaggtgttcatggctgg 531
             ||||| |||||||||||||||||||||||||| |||||
Sbjct: 25286 gtgaacgggttgttccacatgaaggtgttcatagctgg 25323

>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1172G12
          Length = 171974

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 494    gtgaatgggttgttccacatgaaggtgttcatggctgg 531
              ||||| |||||||||||||||||||||||||| |||||
Sbjct: 108362 gtgaacgggttgttccacatgaaggtgttcatagctgg 108399

>dbj|AK100138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L24, full
           insert sequence
          Length = 1128

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 494 gtgaatgggttgttccacatgaaggtgttcatggctgg 531
           ||||| |||||||||||||||||||||||||| |||||
Sbjct: 615 gtgaacgggttgttccacatgaaggtgttcatagctgg 578

>dbj|AK064613.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-C02, full
           insert sequence
          Length = 1706

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 494 gtgaatgggttgttccacatgaaggtgttcatggctgg 531
           ||||| |||||||||||||||||||||||||| |||||
Sbjct: 578 gtgaacgggttgttccacatgaaggtgttcatagctgg 541

>dbj|AK060939.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C05, full
           insert sequence
          Length = 1111

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 494 gtgaatgggttgttccacatgaaggtgttcatggctgg 531
           ||||| |||||||||||||||||||||||||| |||||
Sbjct: 575 gtgaacgggttgttccacatgaaggtgttcatagctgg 538

>gb|AC146367.3| Dasypus novemcinctus clone VMRC5-80B17, complete sequence
          Length = 124849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   cacataacaaataagctgatc 134
             |||||||||||||||||||||
Sbjct: 33927 cacataacaaataagctgatc 33907

>ref|NM_202265.1| Arabidopsis thaliana ATHAL3B; electron carrier AT1G48605 (ATHAL3B)
           mRNA, complete cds
          Length = 618

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 389 ggctcagccatcgcgccgttcccgtagtcgccgcaggccag 429
           ||||||||||| ||||| || |||||||| || ||||||||
Sbjct: 545 ggctcagccattgcgccattaccgtagtctccacaggccag 505

>gb|AC161505.4| Mus musculus chromosome 8, clone RP24-307K17, complete sequence
          Length = 215514

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 433   tttcgtggtgggcgggaccag 453
             |||||||||||||||||||||
Sbjct: 51513 tttcgtggtgggcgggaccag 51493

>gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome 8, complete sequence
          Length = 167913

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 433    tttcgtggtgggcgggaccag 453
              |||||||||||||||||||||
Sbjct: 115388 tttcgtggtgggcgggaccag 115368

>emb|AJ271130.1|PAB271130 Picea abies partial mRNA for putative halotolerance protein HAL3
           homolog, (pPA0038 gene)
          Length = 631

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 497 aatgggttgttccacatgaaggtgttcat 525
           |||||||||||||||||||| || |||||
Sbjct: 203 aatgggttgttccacatgaaagtattcat 175

>gb|AC011328.11| Homo sapiens chromosome 10 clone RP11-295O23, complete sequence
          Length = 216031

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    cccagttggttcatggtctcg 481
              |||||||||||||||||||||
Sbjct: 192357 cccagttggttcatggtctcg 192377

>gb|U80192.3|ATU80192 Arabidopsis thaliana HAL3B protein (HAL3B) gene, complete cds
          Length = 2522

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 389  ggctcagccatcgcgccgttcccgtagtcgccgcaggccag 429
            ||||||||||| ||||| || |||||||| || ||||||||
Sbjct: 1927 ggctcagccattgcgccattaccgtagtctccacaggccag 1887

>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I,
             complete sequence
          Length = 95295

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 389   ggctcagccatcgcgccgttcccgtagtcgccgcaggccag 429
             ||||||||||| ||||| || |||||||| || ||||||||
Sbjct: 84360 ggctcagccattgcgccattaccgtagtctccacaggccag 84400

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 417     cgccgcaggccagccgtttcg 437
               |||||||||||||||||||||
Sbjct: 1455359 cgccgcaggccagccgtttcg 1455339

>gb|AC099884.12| Mus musculus chromosome 15, clone RP23-11F24, complete sequence
          Length = 265797

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atttgcaaaccatcacagca 35
             ||||||||||||||||||||
Sbjct: 37669 atttgcaaaccatcacagca 37650

>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome
              15
          Length = 755217

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     cacagcagaattcagaacaa 48
              ||||||||||||||||||||
Sbjct: 369894 cacagcagaattcagaacaa 369913

>gb|AY811393.1| Schistosoma japonicum SJCHGC02582 protein mRNA, partial cds
          Length = 702

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 caccgatgaacagaacacct 193
           ||||||||||||||||||||
Sbjct: 560 caccgatgaacagaacacct 541

>gb|AC161374.6| Mus musculus BAC clone RP23-266O23 from chromosome 14, complete
             sequence
          Length = 202929

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ccatcacagcagaattcaga 44
             ||||||||||||||||||||
Sbjct: 56741 ccatcacagcagaattcaga 56722

>gb|AC163638.2| Mus musculus BAC clone RP23-188H10 from chromosome 14, complete
             sequence
          Length = 203950

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ccatcacagcagaattcaga 44
             ||||||||||||||||||||
Sbjct: 55734 ccatcacagcagaattcaga 55753

>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    tgaagatagtgaccatcacc 284
              ||||||||||||||||||||
Sbjct: 122499 tgaagatagtgaccatcacc 122518

>emb|BX321858.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 3/10
          Length = 306050

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   gccgtttcgtggtgggcggg 448
             ||||||||||||||||||||
Sbjct: 99525 gccgtttcgtggtgggcggg 99544

>gb|AC124303.5| Homo sapiens chromosome 15, clone RP11-145P16, complete sequence
          Length = 160535

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     cacagcagaattcagaacaa 48
              ||||||||||||||||||||
Sbjct: 108365 cacagcagaattcagaacaa 108346

>gb|AC108682.2| Homo sapiens Xp BAC RP11-325L9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 74143

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 461  cccagttggttcatggtctcgatg 484
            |||||| |||||||||||||||||
Sbjct: 6891 cccagtgggttcatggtctcgatg 6868

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    cgtagtcgccgcaggccagc 430
              ||||||||||||||||||||
Sbjct: 521891 cgtagtcgccgcaggccagc 521872

>gb|AF250841.1|AF250841 Homo sapiens PAC clones A17157 and P0950 imprinted HBII-85 and HBII-52
             small nucleolar RNA genes, complete sequence
          Length = 228017

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cacagcagaattcagaacaa 48
             ||||||||||||||||||||
Sbjct: 63136 cacagcagaattcagaacaa 63155

>gb|AC084277.3| Homo sapiens BAC clone RP11-68O1 from 4, complete sequence
          Length = 150705

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   cccagttggttcatggtctc 480
             ||||||||||||||||||||
Sbjct: 71549 cccagttggttcatggtctc 71568

>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence
          Length = 195657

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     caacattatttatagctgga 65
              ||||||||||||||||||||
Sbjct: 125294 caacattatttatagctgga 125313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,819,988
Number of Sequences: 3902068
Number of extensions: 3819988
Number of successful extensions: 67476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67343
Number of HSP's gapped (non-prelim): 133
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)