ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM3_NOCFA (Q5YP70) Porphobilinogen deaminase (EC 2.5.1.61) (PBG... 30 4.7
2PIM1_HUMAN (P11309) Proto-oncogene serine/threonine-protein kina... 29 7.9

>HEM3_NOCFA (Q5YP70) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 346

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 418 PAQ--LCYECESCRAGLLAALRSQWHKANIALVVATVSLLFLYLIGCSAYKNAHAEAI 251
           PAQ  L  EC S  A L+ AL      A  A VVA  +LL     GC+A   A AE +
Sbjct: 196 PAQGALAVECRSEDAALIEALAELDDAATRAAVVAERALLAELEAGCTAPVGALAEVV 253



to top

>PIM1_HUMAN (P11309) Proto-oncogene serine/threonine-protein kinase Pim-1 (EC|
           2.7.11.1)
          Length = 404

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = +3

Query: 360 RSAARRPARHDSHS*HSCAGSLLHRPQSGSAAGRAG 467
           RS +R   R  SHS HS   SL H P SGS    +G
Sbjct: 46  RSHSRNATRSHSHS-HSPRHSLRHSPGSGSCGSSSG 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,263,334
Number of Sequences: 219361
Number of extensions: 1131062
Number of successful extensions: 3280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3279
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top