ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464681.1| Oryza sativa (japonica cultivar-group), mRNA Length = 813 Score = 236 bits (119), Expect = 6e-59 Identities = 229/265 (86%), Gaps = 3/265 (1%) Strand = Plus / Minus Query: 232 accacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccga 291 ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| |||| Sbjct: 811 accacttgtagcggcggaagagggcctcggcctgggcgttcttgtaggcgctgcagccga 752 Query: 292 tgaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcc 351 |||||||||||||| ||| | |||||||||||| ||||| |||| |||||| ||||| Sbjct: 751 cgaggtagaggaagacgagggcgacggtggcgacgacgagggcgacgttggcgcggtgcc 692 Query: 352 actggctccgcagcgccgccaggaggcccgcgcggcacgactcgcactcgtagcacagct 411 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 691 actgggcgcggagcgccgcgaggaggcccgcgcggcacgactcgcactcgtagcacagct 632 Query: 412 gcgccgggtcgttgctccacaggccgcagtccgggtcggccgcgggccgcgccg---ggt 468 ||| ||||||||| | |||| |||||||||| ||| ||||| |||||||||| | Sbjct: 631 gcgacgggtcgttcccccacgccccgcagtccgcgtccgccgccggccgcgccgccggcc 572 Query: 469 tcgtccacaccgtcgggctcacgta 493 || ||||||||||||||||||||| Sbjct: 571 ccgcccacaccgtcgggctcacgta 547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 236 bits (119), Expect = 6e-59 Identities = 229/265 (86%), Gaps = 3/265 (1%) Strand = Plus / Minus Query: 232 accacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccga 291 ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| |||| Sbjct: 6678853 accacttgtagcggcggaagagggcctcggcctgggcgttcttgtaggcgctgcagccga 6678794 Query: 292 tgaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcc 351 |||||||||||||| ||| | |||||||||||| ||||| |||| |||||| ||||| Sbjct: 6678793 cgaggtagaggaagacgagggcgacggtggcgacgacgagggcgacgttggcgcggtgcc 6678734 Query: 352 actggctccgcagcgccgccaggaggcccgcgcggcacgactcgcactcgtagcacagct 411 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 6678733 actgggcgcggagcgccgcgaggaggcccgcgcggcacgactcgcactcgtagcacagct 6678674 Query: 412 gcgccgggtcgttgctccacaggccgcagtccgggtcggccgcgggccgcgccg---ggt 468 ||| ||||||||| | |||| |||||||||| ||| ||||| |||||||||| | Sbjct: 6678673 gcgacgggtcgttcccccacgccccgcagtccgcgtccgccgccggccgcgccgccggcc 6678614 Query: 469 tcgtccacaccgtcgggctcacgta 493 || ||||||||||||||||||||| Sbjct: 6678613 ccgcccacaccgtcgggctcacgta 6678589
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 236 bits (119), Expect = 6e-59 Identities = 229/265 (86%), Gaps = 3/265 (1%) Strand = Plus / Minus Query: 232 accacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccga 291 ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| |||| Sbjct: 113228 accacttgtagcggcggaagagggcctcggcctgggcgttcttgtaggcgctgcagccga 113169 Query: 292 tgaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcc 351 |||||||||||||| ||| | |||||||||||| ||||| |||| |||||| ||||| Sbjct: 113168 cgaggtagaggaagacgagggcgacggtggcgacgacgagggcgacgttggcgcggtgcc 113109 Query: 352 actggctccgcagcgccgccaggaggcccgcgcggcacgactcgcactcgtagcacagct 411 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 113108 actgggcgcggagcgccgcgaggaggcccgcgcggcacgactcgcactcgtagcacagct 113049 Query: 412 gcgccgggtcgttgctccacaggccgcagtccgggtcggccgcgggccgcgccg---ggt 468 ||| ||||||||| | |||| |||||||||| ||| ||||| |||||||||| | Sbjct: 113048 gcgacgggtcgttcccccacgccccgcagtccgcgtccgccgccggccgcgccgccggcc 112989 Query: 469 tcgtccacaccgtcgggctcacgta 493 || ||||||||||||||||||||| Sbjct: 112988 ccgcccacaccgtcgggctcacgta 112964
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 9e-21 Identities = 106/123 (86%) Strand = Plus / Plus Query: 233 ccacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccgat 292 |||||||||||||||| ||| | |||||| |||||||||||| |||||||||| ||||| Sbjct: 21849932 ccacttgtagcggcggaagaggtcctcggtctgcgcgttcttgaaggcgctgcagccgat 21849991 Query: 293 gaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcca 352 || ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||| || |||| Sbjct: 21849992 gacgtagaagaagatgagcgcgacggtggcgatgacgagggcgacgttggccctgcgcca 21850051 Query: 353 ctg 355 ||| Sbjct: 21850052 ctg 21850054 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 395 gcactcgtagcacagctgcgccgggtcgttgctccacaggccgcagtccgggtcggccgc 454 |||||||||||| ||||||| ||||||||| | |||| | ||||||||| ||| || || Sbjct: 21850094 gcactcgtagcagagctgcgacgggtcgttcccccacgcggcgcagtccgcgtccgcagc 21850153 Query: 455 gggccgcgccgggttcgtccacaccgtcgggctcacgtac 494 || |||||||||| |||||||||||||||||||||| Sbjct: 21850154 cgggttcgccgggttcacccacaccgtcgggctcacgtac 21850193
>dbj|AP005460.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0610D01 Length = 146418 Score = 109 bits (55), Expect = 9e-21 Identities = 106/123 (86%) Strand = Plus / Plus Query: 233 ccacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccgat 292 |||||||||||||||| ||| | |||||| |||||||||||| |||||||||| ||||| Sbjct: 108013 ccacttgtagcggcggaagaggtcctcggtctgcgcgttcttgaaggcgctgcagccgat 108072 Query: 293 gaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcca 352 || ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||| || |||| Sbjct: 108073 gacgtagaagaagatgagcgcgacggtggcgatgacgagggcgacgttggccctgcgcca 108132 Query: 353 ctg 355 ||| Sbjct: 108133 ctg 108135 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 395 gcactcgtagcacagctgcgccgggtcgttgctccacaggccgcagtccgggtcggccgc 454 |||||||||||| ||||||| ||||||||| | |||| | ||||||||| ||| || || Sbjct: 108175 gcactcgtagcagagctgcgacgggtcgttcccccacgcggcgcagtccgcgtccgcagc 108234 Query: 455 gggccgcgccgggttcgtccacaccgtcgggctcacgtac 494 || |||||||||| |||||||||||||||||||||| Sbjct: 108235 cgggttcgccgggttcacccacaccgtcgggctcacgtac 108274
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 109 bits (55), Expect = 9e-21 Identities = 106/123 (86%) Strand = Plus / Plus Query: 233 ccacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccgat 292 |||||||||||||||| ||| | |||||| |||||||||||| |||||||||| ||||| Sbjct: 72417 ccacttgtagcggcggaagaggtcctcggtctgcgcgttcttgaaggcgctgcagccgat 72476 Query: 293 gaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcca 352 || ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||| || |||| Sbjct: 72477 gacgtagaagaagatgagcgcgacggtggcgatgacgagggcgacgttggccctgcgcca 72536 Query: 353 ctg 355 ||| Sbjct: 72537 ctg 72539 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 395 gcactcgtagcacagctgcgccgggtcgttgctccacaggccgcagtccgggtcggccgc 454 |||||||||||| ||||||| ||||||||| | |||| | ||||||||| ||| || || Sbjct: 72579 gcactcgtagcagagctgcgacgggtcgttcccccacgcggcgcagtccgcgtccgcagc 72638 Query: 455 gggccgcgccgggttcgtccacaccgtcgggctcacgtac 494 || |||||||||| |||||||||||||||||||||| Sbjct: 72639 cgggttcgccgggttcacccacaccgtcgggctcacgtac 72678
>dbj|AK070273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046E08, full insert sequence Length = 1216 Score = 109 bits (55), Expect = 9e-21 Identities = 106/123 (86%) Strand = Plus / Minus Query: 233 ccacttgtagcggcggtagatggcctcggcgtgcgcgttcttgtaggcgctgcaaccgat 292 |||||||||||||||| ||| | |||||| |||||||||||| |||||||||| ||||| Sbjct: 878 ccacttgtagcggcggaagaggtcctcggtctgcgcgttcttgaaggcgctgcagccgat 819 Query: 293 gaggtagaggaagaggagcgagacggtggcgaccacgagcgcgatgttggccttgtgcca 352 || ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||| || |||| Sbjct: 818 gacgtagaagaagatgagcgcgacggtggcgatgacgagggcgacgttggccctgcgcca 759 Query: 353 ctg 355 ||| Sbjct: 758 ctg 756 Score = 71.9 bits (36), Expect = 2e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 395 gcactcgtagcacagctgcgccgggtcgttgctccacaggccgcagtccgggtcggccgc 454 |||||||||||| ||||||| ||||||||| | |||| | ||||||||| ||| || || Sbjct: 716 gcactcgtagcagagctgcgacgggtcgttcccccacgcggcgcagtccgcgtccgcagc 657 Query: 455 gggccgcgccgggttcgtccacaccgtcgggctcacgtac 494 || |||||||||| |||||||||||||||||||||| Sbjct: 656 cgggttcgccgggttcacccacaccgtcgggctcacgtac 617
>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18, complete sequence Length = 166185 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 27 attactaaaacattgacatcaacacca 53 |||||||||||||||||| |||||||| Sbjct: 154149 attactaaaacattgacaacaacacca 154123
>gb|BC110092.1| Danio rerio zgc:123203, mRNA (cDNA clone MGC:123203 IMAGE:7292271), complete cds Length = 1215 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 27 attactaaaacattgacatcaacacca 53 |||||||||||||||||| |||||||| Sbjct: 1177 attactaaaacattgacaacaacacca 1151
>ref|NM_001037580.1| Danio rerio zgc:123203 (zgc:123203), mRNA Length = 1215 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 27 attactaaaacattgacatcaacacca 53 |||||||||||||||||| |||||||| Sbjct: 1177 attactaaaacattgacaacaacacca 1151
>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158496 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 gatgaggtagaggaagaggag 310 ||||||||||||||||||||| Sbjct: 87990 gatgaggtagaggaagaggag 88010
>ref|XM_482646.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1061 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 419 gtcgttgctccacaggccgcagtccgggtcggc 451 ||||||||||||| | |||||||||||||||| Sbjct: 712 gtcgttgctccactcgtcgcagtccgggtcggc 680
>emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chromosome 10p13-14 Contains the 3' end of the gene for a protein related to the N terminus of tre (RNTRE) (KIAA0019), gene FLJ34168, a novel gene and a CpG island, complete sequence Length = 171026 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aagctactaataataatactg 166 ||||||||||||||||||||| Sbjct: 60404 aagctactaataataatactg 60424
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 448 cggccgcgggccgcgccgggttcgt 472 |||||| |||||||||||||||||| Sbjct: 233379 cggccgagggccgcgccgggttcgt 233355
>gb|AY158230.1| Mus musculus strain 129/SvJ chromosome 10 clone 10A1 unknown genomic sequence Length = 77891 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 gatgaggtagaggaagaggag 310 ||||||||||||||||||||| Sbjct: 10612 gatgaggtagaggaagaggag 10632
>gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, complete sequence Length = 177829 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 aagctactaataataatactg 166 ||||||||||||||||||||| Sbjct: 143527 aagctactaataataatactg 143547
>gb|AF232751.1| Mycobacterium avium subsp. paratuberculosis major membrane protein-1 gene, partial cds; nifS-like protein gene, complete cds; and unknown protein gene, partial cds Length = 4180 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 agcgagacggtggcgaccacg 329 ||||||||||||||||||||| Sbjct: 2964 agcgagacggtggcgaccacg 2984
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 419 gtcgttgctccacaggccgcagtccgggtcggc 451 ||||||||||||| | |||||||||||||||| Sbjct: 21620514 gtcgttgctccactcgtcgcagtccgggtcggc 21620482
>gb|AC007367.3| Homo sapiens BAC clone RP11-518G12 from 2, complete sequence Length = 197278 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 291 atgaggtagaggaagaggagc 311 ||||||||||||||||||||| Sbjct: 9833 atgaggtagaggaagaggagc 9853
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 452 cgcgggccgcgccgggttcgtccacaccg 480 ||||||| ||||| ||||||||||||||| Sbjct: 1185797 cgcgggcggcgcctggttcgtccacaccg 1185825
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 419 gtcgttgctccacaggccgcagtccgggtcggc 451 ||||||||||||| | |||||||||||||||| Sbjct: 80688 gtcgttgctccactcgtcgcagtccgggtcggc 80656
>dbj|AK110630.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B08, full insert sequence Length = 1061 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 419 gtcgttgctccacaggccgcagtccgggtcggc 451 ||||||||||||| | |||||||||||||||| Sbjct: 712 gtcgttgctccactcgtcgcagtccgggtcggc 680
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 agcgagacggtggcgaccacg 329 ||||||||||||||||||||| Sbjct: 2347860 agcgagacggtggcgaccacg 2347840
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 gcgggccgcgccgggttcgtccac 476 ||||||| |||||||||||||||| Sbjct: 2649731 gcgggccacgccgggttcgtccac 2649754
>ref|XM_475556.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 867 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 655 gcacgactcgcacccgtagcacag 632
>ref|NM_001006601.1| Canis familiaris amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease) (APP), mRNA Length = 2362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 771 cgatgaggtagaggaagagg 790
>ref|XM_450069.1| Oryza sativa (japonica cultivar-group), mRNA Length = 369 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccactggctccgcagcgccg 369 |||||||||||||||||||| Sbjct: 316 ccactggctccgcagcgccg 297
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 cggccgcgggccgcgccgggttcg 471 ||||||||||| |||||||||||| Sbjct: 115027 cggccgcgggcggcgccgggttcg 115050
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gatgaggtagaggaagagga 309 |||||||||||||||||||| Sbjct: 43570 gatgaggtagaggaagagga 43551
>gb|DQ177443.1| Pseudomonas sp. 10c-1-3 poly beta hydroxyalkanoate operon, complete sequence Length = 6421 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 cggccgcgggccgcgccggg 467 |||||||||||||||||||| Sbjct: 6047 cggccgcgggccgcgccggg 6028
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 cggccgcgggccgcgccgggttcg 471 ||||||||||| |||||||||||| Sbjct: 23689 cggccgcgggcggcgccgggttcg 23712
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 96595 gcacgactcgcacccgtagcacag 96572
>gb|AY814900.1| Schistosoma japonicum SJCHGC02687 protein mRNA, complete cds Length = 1325 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 taaaacattgacatcaacaccaac 55 ||||||||||||||||||| |||| Sbjct: 732 taaaacattgacatcaacatcaac 709
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gatgaggtagaggaagagga 309 |||||||||||||||||||| Sbjct: 22448323 gatgaggtagaggaagagga 22448304
>gb|AY498708.1| Canis familiaris beta amyloid precursor protein isoform APP751 (beta APP) mRNA, complete cds; alternatively spliced Length = 2305 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 771 cgatgaggtagaggaagagg 790
>gb|AY498707.1| Canis familiaris beta amyloid precursor protein isoform APP695 (beta APP) mRNA, complete cds; alternatively spliced Length = 2137 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 771 cgatgaggtagaggaagagg 790
>gb|AY498706.1| Canis familiaris beta amyloid precursor protein isoform APP770 (beta APP) mRNA, complete cds; alternatively spliced Length = 2362 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 771 cgatgaggtagaggaagagg 790
>gb|BC015381.1| Homo sapiens ubiquitin carboxyl-terminal hydrolase L5, mRNA (cDNA clone IMAGE:4395342), with apparent retained intron Length = 1740 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 ctggctccgcagcgccgccaggag 376 |||| ||||||||||||||||||| Sbjct: 305 ctggatccgcagcgccgccaggag 328
>emb|AL136370.4| Human DNA sequence from clone RP11-101E13 on chromosome 1q31.2-31.3 Contains a zinc finger protein 101 (ZNF101) pseudogene, the UCHL5 gene for ubiquitin carboxyl-terminal hydrolase L5, the SSA2 gene for Sjogren syndrome antigen A2 (60kDa, ribonucleoprotein autoantigen SS-A/Ro), the GLRX2 gene for glutaredoxin 2 and two CpG islands, complete sequence Length = 147978 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 ctggctccgcagcgccgccaggag 376 |||| ||||||||||||||||||| Sbjct: 61864 ctggatccgcagcgccgccaggag 61887
>emb|CR936683.1| Homo sapiens mRNA; cDNA DKFZp781B1010 (from clone DKFZp781B1010) Length = 7833 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 ctggctccgcagcgccgccaggag 376 |||| ||||||||||||||||||| Sbjct: 303 ctggatccgcagcgccgccaggag 280
>dbj|AK024044.1| Homo sapiens cDNA FLJ13982 fis, clone Y79AA1001711, highly similar to Human 60-kdal ribonucleoprotein (Ro) mRNA Length = 2219 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 ctggctccgcagcgccgccaggag 376 |||| ||||||||||||||||||| Sbjct: 678 ctggatccgcagcgccgccaggag 655
>emb|CR592331.1| full-length cDNA clone CS0DC013YF05 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1474 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 ctggctccgcagcgccgccaggag 376 |||| ||||||||||||||||||| Sbjct: 133 ctggatccgcagcgccgccaggag 110
>gb|S57803.1|S57803S1 Ro60 protein gene [human, mRNA Partial, 176 nt, segment 1 of 2] Length = 176 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 ctggctccgcagcgccgccaggag 376 |||| ||||||||||||||||||| Sbjct: 119 ctggatccgcagcgccgccaggag 96
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 cggccgcgggccgcgccgggttcg 471 ||||||||||| |||||||||||| Sbjct: 18256430 cggccgcgggcggcgccgggttcg 18256453
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccactggctccgcagcgccg 369 |||||||||||||||||||| Sbjct: 1397438 ccactggctccgcagcgccg 1397419
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 1434933 gcacgactcgcacccgtagcacag 1434910
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gatgaggtagaggaagagga 309 |||||||||||||||||||| Sbjct: 22441352 gatgaggtagaggaagagga 22441333
>gb|AC016045.8|AC016045 Homo sapiens chromosome 15 clone RP11-96N2 map 15q21, complete sequence Length = 164868 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aaaccaggaaacattcccta 125 |||||||||||||||||||| Sbjct: 40071 aaaccaggaaacattcccta 40052
>dbj|AB070181.1| Macaca fascicularis testis cDNA clone:QtsA-16602, similar to human receptor transporting protein 1(RTP1), mRNA, NM_153708.1 Length = 2578 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 cgcactcgtagcacagctgc 413 |||||||||||||||||||| Sbjct: 721 cgcactcgtagcacagctgc 702
>gb|AY926582.1| Canis familiaris beta-amyloid precursor protein 695 mRNA, complete cds Length = 2113 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 762 cgatgaggtagaggaagagg 781
>gb|AY926581.1| Canis familiaris beta-amyloid precursor protein 714 mRNA, complete cds Length = 2170 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 762 cgatgaggtagaggaagagg 781
>gb|AY926580.1| Canis familiaris beta-amyloid precursor protein 751 mRNA, complete cds Length = 2281 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 762 cgatgaggtagaggaagagg 781
>gb|AY926579.1| Canis familiaris beta-amyloid precursor protein 770 mRNA, complete cds Length = 2338 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgatgaggtagaggaagagg 308 |||||||||||||||||||| Sbjct: 762 cgatgaggtagaggaagagg 781
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ccactggctccgcagcgccg 369 |||||||||||||||||||| Sbjct: 15551 ccactggctccgcagcgccg 15532
>dbj|AK109915.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C06, full insert sequence Length = 1961 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 cggccgcgggccgcgccgggttcg 471 ||||||||||| |||||||||||| Sbjct: 188 cggccgcgggcggcgccgggttcg 211
>dbj|AK099070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013167F21, full insert sequence Length = 1356 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 992 gcacgactcgcacccgtagcacag 969
>dbj|AK073982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076B15, full insert sequence Length = 1186 Score = 40.1 bits (20), Expect = 6.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 417 gggtcgttgctccacaggccgcagtccgggtcggccgcgg 456 |||||||||||||| |||||| ||||||||||| |||| Sbjct: 871 gggtcgttgctccaggcgccgcaatccgggtcggcggcgg 832
>dbj|AK066098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054A22, full insert sequence Length = 1356 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 992 gcacgactcgcacccgtagcacag 969
>dbj|AK059541.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E11, full insert sequence Length = 1160 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 712 gcacgactcgcacccgtagcacag 689
>dbj|AB085816.2| Pseudomonas putida phbC, phbA, phbB, flp, orf5 genes, complete cds Length = 8991 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 cggccgcgggccgcgccggg 467 |||||||||||||||||||| Sbjct: 6050 cggccgcgggccgcgccggg 6031
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 cggccgcgggccgcgccgggttcg 471 ||||||||||| |||||||||||| Sbjct: 18415711 cggccgcgggcggcgccgggttcg 18415734
>dbj|AP001032.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874N19, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 accataaaccaggaaacatt 120 |||||||||||||||||||| Sbjct: 143108 accataaaccaggaaacatt 143089
>emb|AL606922.5| Mouse DNA sequence from clone RP23-149E24 on chromosome 4, complete sequence Length = 191957 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 taaaccaggaaacattccct 124 |||||||||||||||||||| Sbjct: 152915 taaaccaggaaacattccct 152934
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gcacgactcgcactcgtagcacag 409 ||||||||||||| |||||||||| Sbjct: 29013 gcacgactcgcacccgtagcacag 28990
>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete sequence Length = 165747 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 gatgaggtagaggaagagga 309 |||||||||||||||||||| Sbjct: 132754 gatgaggtagaggaagagga 132735
>emb|AL844565.2| Mouse DNA sequence from clone RP23-427L11 on chromosome 2, complete sequence Length = 95786 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 gatgaggtagaggaagagga 309 |||||||||||||||||||| Sbjct: 60000 gatgaggtagaggaagagga 60019 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,777,476 Number of Sequences: 3902068 Number of extensions: 4777476 Number of successful extensions: 84491 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83617 Number of HSP's gapped (non-prelim): 870 length of query: 497 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 475 effective length of database: 17,147,199,772 effective search space: 8144919891700 effective search space used: 8144919891700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
