ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA 109 9e-21
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
3emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 109 9e-21
4dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
5dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 9e-21
6gb|AF192975.1|AF192975 Oryza sativa unknown gene 109 9e-21
7dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 9e-21
8ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA 107 4e-20
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
10dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
11dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
12dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
13gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 105 1e-19
14gb|AF533700.1| Plasmodium falciparum 3D7 normocyte-binding prote... 44 0.46
15gb|AF411933.2| Plasmodium falciparum strain 7G8 normocyte-bindin... 44 0.46
16gb|AF411932.2| Plasmodium falciparum strain Malayan Camp K- norm... 44 0.46
17gb|AF411931.2| Plasmodium falciparum strain Dd2 normocyte-bindin... 44 0.46
18gb|AF411930.2| Plasmodium falciparum strain HB3 normocyte-bindin... 44 0.46
19gb|AF411929.2| Plasmodium falciparum strain FVO normocyte-bindin... 44 0.46
20emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1 44 0.46
21gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Canc... 42 1.8
22gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 42 1.8
23gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 7.2
24gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.2
25gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.2
26gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Canc... 40 7.2
27gb|AC078955.25| Homo sapiens 12 BAC RP11-543H12 (Roswell Park Ca... 40 7.2
28emb|BX647986.1|HSM808132 Homo sapiens mRNA; cDNA DKFZp686M0752 (... 40 7.2
29gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete... 40 7.2
30gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 40 7.2
31emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 40 7.2 
>ref|XM_550510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Minus

                                                                       
Query: 372 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898

                                                                       
Query: 432 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838

                                                      
Query: 492 catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
           |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 837 cattccaatgaatggaacagcggcatggacagctgcaaaccac 795



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 268  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 327
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999

                        
Query: 328  tctggatacatg 339
            | ||||||||||
Sbjct: 998  tttggatacatg 987
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Plus

                                                                          
Query: 372    ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
              ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431

                                                                          
Query: 432    gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
               ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491

                                                         
Query: 492    catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
              |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 876492 cattccaatgaatggaacagcggcatggacagctgcaaaccac 876534



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 268    atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 327
              ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330

                          
Query: 328    tctggatacatg 339
              | ||||||||||
Sbjct: 876331 tttggatacatg 876342



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    cttattccacttgtctcaccc 144
              |||||||||||||||||||||
Sbjct: 876066 cttattccacttgtctcaccc 876086
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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Plus

                                                                        
Query: 372  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519

                                                                        
Query: 432  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579

                                                       
Query: 492  catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
            |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 8580 cattccaatgaatggaacagcggcatggacagctgcaaaccac 8622



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 268  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 327
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418

                        
Query: 328  tctggatacatg 339
            | ||||||||||
Sbjct: 8419 tttggatacatg 8430



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 124  cttattccacttgtctcaccc 144
            |||||||||||||||||||||
Sbjct: 8154 cttattccacttgtctcaccc 8174
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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Plus

                                                                         
Query: 372   ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
             ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326

                                                                         
Query: 432   gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
              ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386

                                                        
Query: 492   catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
             |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 57387 cattccaatgaatggaacagcggcatggacagctgcaaaccac 57429



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 268   atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 327
             ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225

                         
Query: 328   tctggatacatg 339
             | ||||||||||
Sbjct: 57226 tttggatacatg 57237



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   cttattccacttgtctcaccc 144
             |||||||||||||||||||||
Sbjct: 56961 cttattccacttgtctcaccc 56981
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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Minus

                                                                        
Query: 372  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012

                                                                        
Query: 432  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952

                                                       
Query: 492  catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
            |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 2951 cattccaatgaatggaacagcggcatggacagctgcaaaccac 2909



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 268  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 327
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113

                        
Query: 328  tctggatacatg 339
            | ||||||||||
Sbjct: 3112 tttggatacatg 3101



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 124  cttattccacttgtctcaccc 144
            |||||||||||||||||||||
Sbjct: 3377 cttattccacttgtctcaccc 3357
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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Minus

                                                                       
Query: 372 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180

                                                                       
Query: 432 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120

                                                      
Query: 492 catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
           |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 119 cattccaatgaatggaacagcggcatggacagctgcaaaccac 77



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 268 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 314
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||
Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294
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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score =  109 bits (55), Expect = 9e-21
 Identities = 136/163 (83%)
 Strand = Plus / Minus

                                                                       
Query: 372 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 431
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634

                                                                       
Query: 432 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 491
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574

                                                      
Query: 492 catcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
           |||  | ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 573 cattccaatgaatggaacagcggcatggacagctgcaaaccac 531



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 268 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 327
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735

                       
Query: 328 tctggatacatg 339
           | ||||||||||
Sbjct: 734 tttggatacatg 723



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 124 cttattccacttgtctcaccc 144
           |||||||||||||||||||||
Sbjct: 999 cttattccacttgtctcaccc 979
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>ref|XM_476693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1700

 Score =  107 bits (54), Expect = 4e-20
 Identities = 138/166 (83%)
 Strand = Plus / Minus

                                                                        
Query: 369  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 428
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231

                                                                        
Query: 429  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 488
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171

                                                          
Query: 489  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
            ||||||  ||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 1170 cagcattccgatgaatggaacagcggcatggacagctgcaaaccac 1125



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 48   cagcatcagattacagatgcatggactg 75
            |||||||| |||||||||||||| ||||
Sbjct: 1658 cagcatcaaattacagatgcatgaactg 1631
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  107 bits (54), Expect = 4e-20
 Identities = 138/166 (83%)
 Strand = Plus / Plus

                                                                           
Query: 369     gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 428
               |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963

                                                                           
Query: 429     gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 488
                |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023

                                                             
Query: 489     cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
               ||||||  ||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 3216024 cagcattccgatgaatggaacagcggcatggacagctgcaaaccac 3216069



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 48      cagcatcagattacagatgcatggactg 75
               |||||||| |||||||||||||| ||||
Sbjct: 3215536 cagcatcaaattacagatgcatgaactg 3215563
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score =  107 bits (54), Expect = 4e-20
 Identities = 138/166 (83%)
 Strand = Plus / Plus

                                                                          
Query: 369    gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 428
              |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953

                                                                          
Query: 429    gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 488
               |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013

                                                            
Query: 489    cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
              ||||||  ||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 131014 cagcattccgatgaatggaacagcggcatggacagctgcaaaccac 131059



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 48     cagcatcagattacagatgcatggactg 75
              |||||||| |||||||||||||| ||||
Sbjct: 130526 cagcatcaaattacagatgcatgaactg 130553
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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score =  107 bits (54), Expect = 4e-20
 Identities = 138/166 (83%)
 Strand = Plus / Minus

                                                                        
Query: 369  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 428
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230

                                                                        
Query: 429  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 488
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170

                                                          
Query: 489  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
            ||||||  ||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 1169 cagcattccgatgaatggaacagcggcatggacagctgcaaaccac 1124



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 48   cagcatcagattacagatgcatggactg 75
            |||||||| |||||||||||||| ||||
Sbjct: 1657 cagcatcaaattacagatgcatgaactg 1630
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  107 bits (54), Expect = 4e-20
 Identities = 138/166 (83%)
 Strand = Plus / Plus

                                                                         
Query: 369   gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 428
             |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656

                                                                         
Query: 429   gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 488
              |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716

                                                           
Query: 489   cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
             ||||||  ||||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 25717 cagcattccgatgaatggaacagcggcatggacagctgcaaaccac 25762



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 48    cagcatcagattacagatgcatggactg 75
             |||||||| |||||||||||||| ||||
Sbjct: 25229 cagcatcaaattacagatgcatgaactg 25256
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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score =  105 bits (53), Expect = 1e-19
 Identities = 137/165 (83%)
 Strand = Plus / Minus

                                                                        
Query: 370  ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 429
            |||||||||||  || || | |||||||||||||| ||||| ||||| || || || || 
Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969

                                                                        
Query: 430  aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 489
            |  ||||||||||||||||||||  ||||||| || ||||||||    || |||||||||
Sbjct: 968  acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909

                                                         
Query: 490  agcatcgcgatgaacggaacggcggcatggactgctgcgaaccac 534
            ||||| || ||||||||||| ||||||||||| ||||| ||||||
Sbjct: 908  agcattgcaatgaacggaacagcggcatggacagctgcaaaccac 864
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>gb|AF533700.1| Plasmodium falciparum 3D7 normocyte-binding protein 1 (NBP1) gene,
            complete cds
          Length = 9022

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 17   aatattattgtttctgagtagatata 42
            ||||| ||||||||||||||||||||
Sbjct: 1180 aatataattgtttctgagtagatata 1155
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>gb|AF411933.2| Plasmodium falciparum strain 7G8 normocyte-binding protein 1 (NBP1)
            gene, complete cds
          Length = 9044

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 17   aatattattgtttctgagtagatata 42
            ||||| ||||||||||||||||||||
Sbjct: 1170 aatataattgtttctgagtagatata 1145
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>gb|AF411932.2| Plasmodium falciparum strain Malayan Camp K- normocyte-binding
            protein 1 (NBP1) gene, complete cds
          Length = 9003

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 17   aatattattgtttctgagtagatata 42
            ||||| ||||||||||||||||||||
Sbjct: 1180 aatataattgtttctgagtagatata 1155
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>gb|AF411931.2| Plasmodium falciparum strain Dd2 normocyte-binding protein 1 (NBP1)
            gene, complete cds
          Length = 8979

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 17   aatattattgtttctgagtagatata 42
            ||||| ||||||||||||||||||||
Sbjct: 1180 aatataattgtttctgagtagatata 1155
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>gb|AF411930.2| Plasmodium falciparum strain HB3 normocyte-binding protein 1 (NBP1)
            gene, complete cds
          Length = 9024

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 17   aatattattgtttctgagtagatata 42
            ||||| ||||||||||||||||||||
Sbjct: 1189 aatataattgtttctgagtagatata 1164
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>gb|AF411929.2| Plasmodium falciparum strain FVO normocyte-binding protein 1 (NBP1)
            gene, complete cds
          Length = 9049

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 17   aatattattgtttctgagtagatata 42
            ||||| ||||||||||||||||||||
Sbjct: 1189 aatataattgtttctgagtagatata 1164
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>emb|AL034557.8|PFMAL4P1 Plasmodium falciparum MAL4P1
          Length = 347582

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 17     aatattattgtttctgagtagatata 42
              ||||| ||||||||||||||||||||
Sbjct: 145270 aatataattgtttctgagtagatata 145245
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>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167137

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 259    gagccaggtatcttcagcgca 279
              |||||||||||||||||||||
Sbjct: 138713 gagccaggtatcttcagcgca 138693
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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 96     ttcacagcaggacgtggtact 116
              |||||||||||||||||||||
Sbjct: 159317 ttcacagcaggacgtggtact 159337
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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     atgcatggactgacaacaca 83
              ||||||||||||||||||||
Sbjct: 115683 atgcatggactgacaacaca 115664
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gtcggtgcaggagcgccggc 251
               ||||||||||||||||||||
Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    cagcatcgcgatgaacggaa 508
              ||||||||||||||||||||
Sbjct: 159362 cagcatcgcgatgaacggaa 159343
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>gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 177800

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tatatatcagcatcagatta 60
             ||||||||||||||||||||
Sbjct: 84504 tatatatcagcatcagatta 84485
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>gb|AC078955.25| Homo sapiens 12 BAC RP11-543H12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159577

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 45    tatcagcatcagattacagatgca 68
             ||||||| ||||||||||||||||
Sbjct: 67165 tatcagcttcagattacagatgca 67142
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>emb|BX647986.1|HSM808132 Homo sapiens mRNA; cDNA DKFZp686M0752 (from clone DKFZp686M0752)
          Length = 4296

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 45   tatcagcatcagattacagatgca 68
            ||||||| ||||||||||||||||
Sbjct: 2556 tatcagcttcagattacagatgca 2533
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>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence
          Length = 52591

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 342   ggtgactgtggcggcgggaccggcggtg 369
             |||| |||||||||||||| ||||||||
Sbjct: 30448 ggtggctgtggcggcgggagcggcggtg 30475
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>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    cacaaccacgacaagtttca 99
             ||||||||||||||||||||
Sbjct: 49823 cacaaccacgacaagtttca 49804
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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
              sequence
          Length = 201727

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    cgaggatggaggctgctatg 447
              ||||||||||||||||||||
Sbjct: 162615 cgaggatggaggctgctatg 162596


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,950,209
Number of Sequences: 3902068
Number of extensions: 3950209
Number of successful extensions: 67524
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67358
Number of HSP's gapped (non-prelim): 164
length of query: 534
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 511
effective length of database: 17,143,297,704
effective search space: 8760225126744
effective search space used: 8760225126744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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