>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)|
           (NSP-like protein II) (NSPLII)
          Length = 236

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = -1

Query: 486 NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIPKGPSKD 307
           N +TL  +  +++++VP++YEKY+ +ID +   A  + K       EK  +K+P G +K 
Sbjct: 179 NGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKIQAKLP-GIAKK 233

Query: 306 KKQ 298
           K +
Sbjct: 234 KAE 236

>RTN3_MOUSE (Q9ES97) Reticulon-3|
          Length = 237

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = -1

Query: 486 NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIPKGPSKD 307
           N +TL  +  +++++VP++YEKY+ +ID +   A  + K       EK  +K+P G +K 
Sbjct: 180 NGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKIQAKLP-GIAKK 234

Query: 306 KKQ 298
           K +
Sbjct: 235 KAE 237

>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
            (Foocen) (Neuroendocrine-specific protein) (NSP)
            (Neuroendocrine-specific protein C homolog) (RTN-x)
            (Reticulon-5)
          Length = 1192

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = -1

Query: 486  NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIP 325
            N LTL  +  + L++VPV+YE+++ +ID +   A   +K   A    K  +KIP
Sbjct: 1136 NGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMA----KIQAKIP 1185

>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily|
           member 7)
          Length = 238

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 483 FLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKK 367
           F  L  +VF++  T+ VL+  Y DKID++ ++   +LKK
Sbjct: 86  FFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQ---DLKK 121

>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
          Length = 1162

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -1

Query: 486  NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIP 325
            N LTL  +  + L+++PV+YE+++ +ID +   A   +K   A    K  +KIP
Sbjct: 1106 NGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMA----KIQAKIP 1155

>ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2763

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
 Frame = -1

Query: 474  LFYIVFMVLYTVPV----------LYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKI 328
            L+YI+  +LY +P           LYEKY DK+D   EK   ++K    IFD+   S+I
Sbjct: 2269 LWYIMKRLLYKLPFETGYAVINLQLYEKYSDKLD---EKISEKIKAANLIFDQLQNSQI 2324

>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
            (Foocen) (Glut4 vesicle 20 kDa protein)
          Length = 1163

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -1

Query: 486  NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIP 325
            N LTL  +  + L+++PV+YE+++ +ID +   A   +K   A    K  +KIP
Sbjct: 1107 NGLTLLILALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMA----KIQAKIP 1156

>Y1241_AQUAE (O67286) Hypothetical protein aq_1241|
          Length = 150

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -1

Query: 474 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYA----IFDEKCLSKIPKG 319
           +F ++ +++Y+   L +KY+      G+K + + KK Y     I D+K   KIPKG
Sbjct: 4   IFLLLSLLIYSCQELPKKYQTPE---GKKILEKYKKQYVKGVVILDDKLKEKIPKG 56

>TSN4_HUMAN (O14817) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily|
           member 7) (Novel antigen 2) (NAG-2)
          Length = 238

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 483 FLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKK 367
           F  L  +VF++  T+ +L+  Y DKID + ++   +LKK
Sbjct: 86  FFLLLLLVFLLEATIAILFFAYTDKIDRYAQQ---DLKK 121

>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 471

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 486 NFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 397
           N LTL  +  + L+TVP+LY +++ +ID +
Sbjct: 403 NGLTLVILGVVALFTVPLLYRQHQAQIDQY 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,221,707
Number of Sequences: 219361
Number of extensions: 1332549
Number of successful extensions: 3738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3736
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)