ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
2dbj|AK104245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 224 2e-55
3dbj|AK061354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 5e-53
4gb|AY104861.1| Zea mays PCO082817 mRNA sequence 186 5e-44
5gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome... 176 4e-41
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
7gb|AY112460.1| Zea mays CL9078_1 mRNA sequence 119 9e-24
8ref|NM_191117.1| Oryza sativa (japonica cultivar-group), predic... 115 1e-22
9dbj|AK121245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
10dbj|AK065226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
11dbj|AK062151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
13dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
14ref|XM_507601.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.002
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
16dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
18dbj|AK068776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
19gb|AY103934.1| Zea mays PCO140136 mRNA sequence 46 0.11
20gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.43
21ref|XM_658649.1| Aspergillus nidulans FGSC A4 hypothetical prote... 44 0.43
22gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar N... 44 0.43
23dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.43
25gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.43
26ref|NM_123524.3| Arabidopsis thaliana unknown protein AT5G41600 ... 42 1.7
27gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, comp... 42 1.7
28gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complet... 42 1.7
29gb|AY150449.1| Arabidopsis thaliana unknown protein (At5g41600) ... 42 1.7
30gb|AY035169.1| Arabidopsis thaliana unknown protein (At5g41600) ... 42 1.7
31gb|AY057638.1| Arabidopsis thaliana AT5g41600/MBK23_13 mRNA, com... 42 1.7
32gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 1.7
33dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.7
34gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 1.7
35ref|NM_130268.2| Arabidopsis thaliana ATPase, coupled to transme... 40 6.7
36gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
37gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
38gb|BC063719.1| Xenopus laevis hypothetical protein MGC68665, mRN... 40 6.7
39gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 40 6.7
40gb|AC138638.11| Mus musculus chromosome 8, clone RP23-380M21, co... 40 6.7
41gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map... 40 6.7
42gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 ma... 40 6.7
43gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nippon... 40 6.7
44gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 6.7
45dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
46dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
47dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
48dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
49dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
50dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
51dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
52gb|AC102210.6| Mus musculus chromosome 8, clone RP24-351F4, comp... 40 6.7 
>dbj|AK121753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087P17, full
           insert sequence
          Length = 1106

 Score =  224 bits (113), Expect = 2e-55
 Identities = 164/181 (90%)
 Strand = Plus / Minus

                                                                       
Query: 315 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 374
           ||||||||||||| ||||| || ||||| ||||||||||| || || |||||||||||||
Sbjct: 801 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 742

                                                                       
Query: 375 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 434
           |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| |
Sbjct: 741 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 682

                                                                       
Query: 435 caggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagc 494
           ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct: 681 caggcacggtgtacagtaccataaagactatgtagaacaaggtcaggaaattgcagcagc 622

            
Query: 495 t 495
           |
Sbjct: 621 t 621
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>dbj|AK104245.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D08, full
           insert sequence
          Length = 1039

 Score =  224 bits (113), Expect = 2e-55
 Identities = 164/181 (90%)
 Strand = Plus / Minus

                                                                       
Query: 315 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 374
           ||||||||||||| ||||| || ||||| ||||||||||| || || |||||||||||||
Sbjct: 818 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 759

                                                                       
Query: 375 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 434
           |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| |
Sbjct: 758 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 699

                                                                       
Query: 435 caggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagc 494
           ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct: 698 caggcacggtgtacagtaccataaagactatgtagaacaaggtcaggaaattgcagcagc 639

            
Query: 495 t 495
           |
Sbjct: 638 t 638
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>dbj|AK061354.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-G11, full
           insert sequence
          Length = 1138

 Score =  216 bits (109), Expect = 5e-53
 Identities = 163/181 (90%)
 Strand = Plus / Minus

                                                                       
Query: 315 acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 374
           ||||||||| ||| ||||| || ||||| ||||||||||| || || |||||||||||||
Sbjct: 843 acggaccctcggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 784

                                                                       
Query: 375 gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 434
           |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| |
Sbjct: 783 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 724

                                                                       
Query: 435 caggcacggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagc 494
           ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct: 723 caggcacggtgtacagtaccataaagactatgtagaacaaggtcaggaaattgcagcagc 664

            
Query: 495 t 495
           |
Sbjct: 663 t 663
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>gb|AY104861.1| Zea mays PCO082817 mRNA sequence
          Length = 1190

 Score =  186 bits (94), Expect = 5e-44
 Identities = 178/206 (86%)
 Strand = Plus / Minus

                                                                       
Query: 290 ttctaatgctgcttcttgtccttggacggacccttgggaatcttggacaggcacttctca 349
           |||||||| ||||||||||| ||  | || ||||| |||||||| || ||||| ||||| 
Sbjct: 869 ttctaatgttgcttcttgtcttttaatgggcccttcggaatctttgataggcatttctcg 810

                                                                       
Query: 350 tcgaagatggcgtagtacttcttcagttcgaccatggccttctctccaaaagcatcaatc 409
           |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 809 tcgaagatggcgtagtacctcttcagctcgaccatggccttctcaccaaaagcatcaacc 750

                                                                       
Query: 410 ttgtcctcatacttctcgtacaggacaggcacggtgtagagtaccatgaagactatgtag 469
           || |||||||  ||||| |||||||| || || ||||| |||||||| || |||||||| 
Sbjct: 749 ttatcctcatgtttctcatacaggaccggtacagtgtacagtaccataaaaactatgtaa 690

                                     
Query: 470 aacaaggtgaggaaattgcaggagct 495
            |||||||||||||||||||| ||||
Sbjct: 689 gacaaggtgaggaaattgcagcagct 664
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>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11,
             complete sequence
          Length = 112065

 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Plus

                                                                         
Query: 315   acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 374
             ||||||||||||| ||||| || ||||| ||||||||||| || || |||||||||||||
Sbjct: 76782 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 76841

                                                                         
Query: 375   gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 434
             |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| |
Sbjct: 76842 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 76901

                                          
Query: 435   caggcacggtgtagagtaccatgaagact 463
             ||||||||||||| |||||||| ||||||
Sbjct: 76902 caggcacggtgtacagtaccataaagact 76930



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 462   ctatgtagaacaaggtgaggaaattgcaggagct 495
             |||||||||||||||| |||||||||||| ||||
Sbjct: 77005 ctatgtagaacaaggtcaggaaattgcagcagct 77038
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  176 bits (89), Expect = 4e-41
 Identities = 134/149 (89%)
 Strand = Plus / Plus

                                                                            
Query: 315      acggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttca 374
                ||||||||||||| ||||| || ||||| ||||||||||| || || |||||||||||||
Sbjct: 25973655 acggacccttggggatcttagagaggcatttctcatcgaaaatagcatagtacttcttca 25973714

                                                                            
Query: 375      gttcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacagga 434
                |||||| |||||||||||||||||||||||| || | ||||||||||||||| ||||| |
Sbjct: 25973715 gttcgatcatggccttctctccaaaagcatcgatttggtcctcatacttctcatacagaa 25973774

                                             
Query: 435      caggcacggtgtagagtaccatgaagact 463
                ||||||||||||| |||||||| ||||||
Sbjct: 25973775 caggcacggtgtacagtaccataaagact 25973803



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                  
Query: 462      ctatgtagaacaaggtgaggaaattgcaggagct 495
                |||||||||||||||| |||||||||||| ||||
Sbjct: 25973878 ctatgtagaacaaggtcaggaaattgcagcagct 25973911



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 207      aatcacaagttcacaaccatcc 228
                ||||||||||||||||||||||
Sbjct: 28830076 aatcacaagttcacaaccatcc 28830055



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 208      atcacaagttcacaaccatc 227
                ||||||||||||||||||||
Sbjct: 25063676 atcacaagttcacaaccatc 25063695
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>gb|AY112460.1| Zea mays CL9078_1 mRNA sequence
          Length = 686

 Score =  119 bits (60), Expect = 9e-24
 Identities = 147/176 (83%)
 Strand = Plus / Plus

                                                                       
Query: 320 cccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagttcg 379
           ||||| |||||||| || ||||||||||||||||| ||||| || |||||||||||||| 
Sbjct: 343 ccctttggaatcttcgataggcacttctcatcgaaaatggcataatacttcttcagttca 402

                                                                       
Query: 380 accatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggacaggc 439
             ||| |||||||| ||||||||||||| |||||||||||| ||||| ||||| || || 
Sbjct: 403 gtcatagccttctcaccaaaagcatcaaccttgtcctcatatttctcatacagaactggt 462

                                                                   
Query: 440 acggtgtagagtaccatgaagactatgtagaacaaggtgaggaaattgcaggagct 495
           || ||||| ||| |||  ||||| || |||||||  || ||||| |||||| ||||
Sbjct: 463 acagtgtacagtgccacaaagacaatatagaacagtgtcaggaagttgcagcagct 518
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>ref|NM_191117.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 762

 Score =  115 bits (58), Expect = 1e-22
 Identities = 133/158 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 376
           ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | |
Sbjct: 740 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 681

                                                                       
Query: 377 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 436
           || | |   |||||||| ||||||||||||| |||||||||||||||||| ||||| || 
Sbjct: 680 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 621

                                                 
Query: 437 ggcacggtgtagagtaccatgaagactatgtagaacaa 474
           ||||| ||||||||  |||  || ||||||||||||||
Sbjct: 620 ggcacagtgtagagcgccacaaaaactatgtagaacaa 583
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>dbj|AK121245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099G09, full
           insert sequence
          Length = 1325

 Score =  115 bits (58), Expect = 1e-22
 Identities = 133/158 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 376
           ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | |
Sbjct: 874 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 815

                                                                       
Query: 377 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 436
           || | |   |||||||| ||||||||||||| |||||||||||||||||| ||||| || 
Sbjct: 814 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 755

                                                 
Query: 437 ggcacggtgtagagtaccatgaagactatgtagaacaa 474
           ||||| ||||||||  |||  || ||||||||||||||
Sbjct: 754 ggcacagtgtagagcgccacaaaaactatgtagaacaa 717
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>dbj|AK065226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H02, full
           insert sequence
          Length = 1181

 Score =  115 bits (58), Expect = 1e-22
 Identities = 133/158 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 376
           ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | |
Sbjct: 865 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 806

                                                                       
Query: 377 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 436
           || | |   |||||||| ||||||||||||| |||||||||||||||||| ||||| || 
Sbjct: 805 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 746

                                                 
Query: 437 ggcacggtgtagagtaccatgaagactatgtagaacaa 474
           ||||| ||||||||  |||  || ||||||||||||||
Sbjct: 745 ggcacagtgtagagcgccacaaaaactatgtagaacaa 708
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>dbj|AK062151.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H05, full
           insert sequence
          Length = 731

 Score =  115 bits (58), Expect = 1e-22
 Identities = 133/158 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 376
           ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | |
Sbjct: 385 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 326

                                                                       
Query: 377 tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 436
           || | |   |||||||| ||||||||||||| |||||||||||||||||| ||||| || 
Sbjct: 325 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 266

                                                 
Query: 437 ggcacggtgtagagtaccatgaagactatgtagaacaa 474
           ||||| ||||||||  |||  || ||||||||||||||
Sbjct: 265 ggcacagtgtagagcgccacaaaaactatgtagaacaa 228
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 114/134 (85%)
 Strand = Plus / Minus

                                                                            
Query: 317      ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 376
                ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | |
Sbjct: 30733527 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 30733468

                                                                            
Query: 377      tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 436
                || | |   |||||||| ||||||||||||| |||||||||||||||||| ||||| || 
Sbjct: 30733467 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 30733408

                              
Query: 437      ggcacggtgtagag 450
                ||||| ||||||||
Sbjct: 30733407 ggcacagtgtagag 30733394



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 208      atcacaagttcacaaccatc 227
                ||||||||||||||||||||
Sbjct: 23932590 atcacaagttcacaaccatc 23932571



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 207      aatcacaagttcacaaccat 226
                ||||||||||||||||||||
Sbjct: 20903311 aatcacaagttcacaaccat 20903330
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>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0021A09
          Length = 127973

 Score =  107 bits (54), Expect = 3e-20
 Identities = 114/134 (85%)
 Strand = Plus / Minus

                                                                         
Query: 317   ggacccttgggaatcttggacaggcacttctcatcgaagatggcgtagtacttcttcagt 376
             ||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||||| | |
Sbjct: 22802 ggacccttgggaatcttcgataggcatttctcttcaaagagggcatagtacttcttaaat 22743

                                                                         
Query: 377   tcgaccatggccttctctccaaaagcatcaatcttgtcctcatacttctcgtacaggaca 436
             || | |   |||||||| ||||||||||||| |||||||||||||||||| ||||| || 
Sbjct: 22742 tcaatctcagccttctcaccaaaagcatcaaccttgtcctcatacttctcatacagtact 22683

                           
Query: 437   ggcacggtgtagag 450
             ||||| ||||||||
Sbjct: 22682 ggcacagtgtagag 22669
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>ref|XM_507601.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0033D24.25
            mRNA
          Length = 1524

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 64   atattacaccaacacaacttgcaagt 89
            ||||||||||||||||||||||||||
Sbjct: 1463 atattacaccaacacaacttgcaagt 1438
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 64       atattacaccaacacaacttgcaagt 89
                ||||||||||||||||||||||||||
Sbjct: 26763032 atattacaccaacacaacttgcaagt 26763007
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>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0033D24
          Length = 186132

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 64     atattacaccaacacaacttgcaagt 89
              ||||||||||||||||||||||||||
Sbjct: 106374 atattacaccaacacaacttgcaagt 106349
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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665C04
          Length = 177054

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 64    atattacaccaacacaacttgcaagt 89
             ||||||||||||||||||||||||||
Sbjct: 25822 atattacaccaacacaacttgcaagt 25797
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>dbj|AK068776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160K11, full
            insert sequence
          Length = 1524

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 64   atattacaccaacacaacttgcaagt 89
            ||||||||||||||||||||||||||
Sbjct: 1463 atattacaccaacacaacttgcaagt 1438
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>gb|AY103934.1| Zea mays PCO140136 mRNA sequence
          Length = 1116

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 404 tcaatcttgtcctcatacttctcgtacaggacagg 438
           |||||||  ||||| ||||||||||||||||||||
Sbjct: 797 tcaatctgatcctcgtacttctcgtacaggacagg 763
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>gb|AC112514.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0023M11, complete sequence
          Length = 120228

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 205   ggaatcacaagttcacaaccat 226
             ||||||||||||||||||||||
Sbjct: 78627 ggaatcacaagttcacaaccat 78648
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>ref|XM_658649.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6137.2), mRNA
          Length = 2346

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 257  tgaagataaatctgcgcagggtaatctcta 286
            ||||||| |||||||||| |||||||||||
Sbjct: 2316 tgaagatcaatctgcgcaaggtaatctcta 2345
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>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from
             chromosome 10, complete sequence
          Length = 134933

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 205   ggaatcacaagttcacaaccat 226
             ||||||||||||||||||||||
Sbjct: 18399 ggaatcacaagttcacaaccat 18420
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 205      ggaatcacaagttcacaaccat 226
                ||||||||||||||||||||||
Sbjct: 10237074 ggaatcacaagttcacaaccat 10237095



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     gaatcacaagttcacaacca 225
               ||||||||||||||||||||
Sbjct: 9787346 gaatcacaagttcacaacca 9787327
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 205      ggaatcacaagttcacaaccat 226
                ||||||||||||||||||||||
Sbjct: 10243113 ggaatcacaagttcacaaccat 10243134



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     gaatcacaagttcacaacca 225
               ||||||||||||||||||||
Sbjct: 9793385 gaatcacaagttcacaacca 9793366
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>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035N21, complete sequence
          Length = 128331

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 207   aatcacaagttcacaaccatcc 228
             ||||||||||||||||||||||
Sbjct: 43391 aatcacaagttcacaaccatcc 43412
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>ref|NM_123524.3| Arabidopsis thaliana unknown protein AT5G41600 mRNA, complete cds
          Length = 1095

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 410 ttgtcctcatacttctcgtacaggacagg 438
           |||||||||||||||||||| || |||||
Sbjct: 747 ttgtcctcatacttctcgtagagtacagg 719
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>gb|AC115933.7| Mus musculus chromosome 3, clone RP24-539I8, complete sequence
          Length = 187920

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   tgttctaatgctgcttcttgt 308
             |||||||||||||||||||||
Sbjct: 82976 tgttctaatgctgcttcttgt 82956
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>gb|AC073054.2| Homo sapiens BAC clone RP11-106F1 from 7, complete sequence
          Length = 154419

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 283   tctactgttctaatgctgcttcttg 307
             |||||||||||||| ||||||||||
Sbjct: 84467 tctactgttctaattctgcttcttg 84491
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>gb|AY150449.1| Arabidopsis thaliana unknown protein (At5g41600) mRNA, complete cds
          Length = 805

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 410 ttgtcctcatacttctcgtacaggacagg 438
           |||||||||||||||||||| || |||||
Sbjct: 647 ttgtcctcatacttctcgtagagtacagg 619
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>gb|AY035169.1| Arabidopsis thaliana unknown protein (At5g41600) mRNA, complete cds
          Length = 1061

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 410 ttgtcctcatacttctcgtacaggacagg 438
           |||||||||||||||||||| || |||||
Sbjct: 701 ttgtcctcatacttctcgtagagtacagg 673
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>gb|AY057638.1| Arabidopsis thaliana AT5g41600/MBK23_13 mRNA, complete cds
          Length = 1103

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 410 ttgtcctcatacttctcgtacaggacagg 438
           |||||||||||||||||||| || |||||
Sbjct: 747 ttgtcctcatacttctcgtagagtacagg 719
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 394     tccaaaagcatcaatcttgtc 414
               |||||||||||||||||||||
Sbjct: 2376527 tccaaaagcatcaatcttgtc 2376547
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>dbj|AB005233.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBK23
          Length = 79837

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 410   ttgtcctcatacttctcgtacaggacagg 438
             |||||||||||||||||||| || |||||
Sbjct: 32300 ttgtcctcatacttctcgtagagtacagg 32272
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 394     tccaaaagcatcaatcttgtc 414
               |||||||||||||||||||||
Sbjct: 1904909 tccaaaagcatcaatcttgtc 1904889
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>ref|NM_130268.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
           substances AT2G47000 mRNA, complete cds
          Length = 4001

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 389 ttctctccaaaagcatcaat 408
           ||||||||||||||||||||
Sbjct: 281 ttctctccaaaagcatcaat 262
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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17,
              complete sequence
          Length = 139829

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    atcacaagttcacaaccatc 227
              ||||||||||||||||||||
Sbjct: 132529 atcacaagttcacaaccatc 132548
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>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11,
            complete sequence
          Length = 162772

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  atcacaagttcacaaccatc 227
            ||||||||||||||||||||
Sbjct: 6331 atcacaagttcacaaccatc 6350
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>gb|BC063719.1| Xenopus laevis hypothetical protein MGC68665, mRNA (cDNA clone
            MGC:68665 IMAGE:4032810), complete cds
          Length = 6579

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  tgatcaactttgaagataaa 266
            ||||||||||||||||||||
Sbjct: 5558 tgatcaactttgaagataaa 5539
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     cagggtaatctctactgttc 292
               ||||||||||||||||||||
Sbjct: 1171459 cagggtaatctctactgttc 1171478
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>gb|AC138638.11| Mus musculus chromosome 8, clone RP23-380M21, complete sequence
          Length = 168821

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 gacatggaatcacaagttca 219
           ||||||||||||||||||||
Sbjct: 597 gacatggaatcacaagttca 578
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>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete
             sequence
          Length = 106329

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   ttctctccaaaagcatcaat 408
             ||||||||||||||||||||
Sbjct: 45109 ttctctccaaaagcatcaat 45090
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>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete
             sequence
          Length = 93158

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   atcacaagttcacaaccatc 227
             ||||||||||||||||||||
Sbjct: 30966 atcacaagttcacaaccatc 30947
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>gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0045C13, from Chromosome 10, complete sequence
          Length = 161250

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gaatcacaagttcacaacca 225
             ||||||||||||||||||||
Sbjct: 19825 gaatcacaagttcacaacca 19806
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 455     atgaagactatgtagaacaa 474
               ||||||||||||||||||||
Sbjct: 2317446 atgaagactatgtagaacaa 2317427
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     ggaatcacaagttcacaacc 224
               ||||||||||||||||||||
Sbjct: 4386047 ggaatcacaagttcacaacc 4386028
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 208      atcacaagttcacaaccatc 227
                ||||||||||||||||||||
Sbjct: 24407528 atcacaagttcacaaccatc 24407547
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>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1110C07
          Length = 173859

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    aatcacaagttcacaaccat 226
              ||||||||||||||||||||
Sbjct: 121753 aatcacaagttcacaaccat 121772
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>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   atcacaagttcacaaccatc 227
             ||||||||||||||||||||
Sbjct: 78994 atcacaagttcacaaccatc 78975
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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0090K04
          Length = 152556

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   atcacaagttcacaaccatc 227
             ||||||||||||||||||||
Sbjct: 47112 atcacaagttcacaaccatc 47093
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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ggaatcacaagttcacaacc 224
             ||||||||||||||||||||
Sbjct: 25896 ggaatcacaagttcacaacc 25877
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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1792_D02
          Length = 141649

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   atcacaagttcacaaccatc 227
             ||||||||||||||||||||
Sbjct: 35734 atcacaagttcacaaccatc 35753
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>gb|AC102210.6| Mus musculus chromosome 8, clone RP24-351F4, complete sequence
          Length = 165443

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gacatggaatcacaagttca 219
             ||||||||||||||||||||
Sbjct: 78941 gacatggaatcacaagttca 78960


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,802,853
Number of Sequences: 3902068
Number of extensions: 3802853
Number of successful extensions: 73000
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72657
Number of HSP's gapped (non-prelim): 337
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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