ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_193168.1| Oryza sativa (japonica cultivar-group), predic... 218 1e-53
2dbj|AK068824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
3dbj|AK059305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5dbj|AP003370.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6gb|AY106077.1| Zea mays PCO149989 mRNA sequence 129 1e-26
7gb|AY911854.1| Nicotiana tabacum cinnamyl alcohol dehydrogenase ... 64 5e-07
8gb|AY362455.1| Quercus suber NADPH-dependent cinnamyl alcohol de... 50 0.007
9emb|AM160602.1| Quercus ilex mRNA for cinnamyl alcohol dehydroge... 50 0.007
10emb|AM160601.1| Quercus suber mRNA for cinnamyl alcohol dehydrog... 50 0.007
11gb|AF033851.1| Vigna radiata aldehyde reductase mRNA, complete cds 48 0.029
12gb|AC005296.2| Homo sapiens X BAC GS1-214D18 (Genome Systems Hum... 44 0.44
13gb|AF053084.1|AF053084 Malus domestica putative cinnamyl alcohol... 44 0.44
14gb|U69694.1|BOU69694 Brassica oleracea ATP-sulfurylase precursor... 44 0.44
15emb|AM159095.1| Plantago major mRNA for cinnamoyl alcohol dehydr... 44 0.44
16gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, com... 40 6.9
17gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome... 40 6.9
18gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, comp... 40 6.9
19emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacterioph... 40 6.9
20gb|AC158345.8| Mus musculus chromosome 7, clone RP23-271M19, com... 40 6.9
21gb|AC134432.4| Mus musculus BAC clone RP24-389K11 from chromosom... 40 6.9
22gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome... 40 6.9
23ref|XM_396579.1| PREDICTED: Apis mellifera similar to ENSANGP000... 40 6.9
24gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5,... 40 6.9
25gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, compl... 40 6.9
26gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome... 40 6.9
27gb|AF066054.1|AF066054 Pichia pastoris formaldehyde dehydrogenas... 40 6.9 
>ref|NM_193168.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score =  218 bits (110), Expect = 1e-53
 Identities = 263/314 (83%)
 Strand = Plus / Minus

                                                                        
Query: 200  tcaaaagtcagaaatcctttctctttcaaactctcgatagtctccttgaggctcgtctcc 259
            |||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| | |
Sbjct: 1343 tcaaaagtaacaaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgc 1284

                                                                        
Query: 260  aggggaatcagctccatgcccagacttcttatcttgtcctttgacacttggtagattgtg 319
            |||||| |||| |||| |||||  ||| ||||||| |||||||| || ||||||||||  
Sbjct: 1283 aggggagtcagttccaggcccaagctttttatcttttcctttgatacctggtagattggc 1224

                                                                        
Query: 320  gcaaaaggagcgtcatctgcacacttgtctggcactggaaattcaggatacatctcgtgt 379
             |  | ||   |||||||||||||||||||||||  ||||  |  |||||||||||  | 
Sbjct: 1223 actgatggcttgtcatctgcacacttgtctggcagaggaatattgggatacatctcacga 1164

                                                                        
Query: 380  atgatcttgacaaggtccgagtggtgaatgactctttcaaccatgcaatatcttccgttt 439
            ||||| | ||| || || |||| |||    |||||||||||||||||||||||||| |||
Sbjct: 1163 atgatttggacgagctctgagtagtgcgcaactctttcaaccatgcaatatcttccattt 1104

                                                                        
Query: 440  gctgaaggatcttcatatgctaggatatgtgccagggcaacatctttaacgtttacccat 499
            ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 1103 gctgaaggaacttcatatgcaaggatatgtgccagggcaacatccttaacgtttatccag 1044

                          
Query: 500  ccaaagcagaaatt 513
            ||||||| ||||||
Sbjct: 1043 ccaaagctgaaatt 1030
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>dbj|AK068824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162A03, full
            insert sequence
          Length = 1334

 Score =  218 bits (110), Expect = 1e-53
 Identities = 263/314 (83%)
 Strand = Plus / Minus

                                                                        
Query: 200  tcaaaagtcagaaatcctttctctttcaaactctcgatagtctccttgaggctcgtctcc 259
            |||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| | |
Sbjct: 1156 tcaaaagtaacaaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgc 1097

                                                                        
Query: 260  aggggaatcagctccatgcccagacttcttatcttgtcctttgacacttggtagattgtg 319
            |||||| |||| |||| |||||  ||| ||||||| |||||||| || ||||||||||  
Sbjct: 1096 aggggagtcagttccaggcccaagctttttatcttttcctttgatacctggtagattggc 1037

                                                                        
Query: 320  gcaaaaggagcgtcatctgcacacttgtctggcactggaaattcaggatacatctcgtgt 379
             |  | ||   |||||||||||||||||||||||  ||||  |  |||||||||||  | 
Sbjct: 1036 actgatggcttgtcatctgcacacttgtctggcagaggaatattgggatacatctcacga 977

                                                                        
Query: 380  atgatcttgacaaggtccgagtggtgaatgactctttcaaccatgcaatatcttccgttt 439
            ||||| | ||| || || |||| |||    |||||||||||||||||||||||||| |||
Sbjct: 976  atgatttggacgagctctgagtagtgcgcaactctttcaaccatgcaatatcttccattt 917

                                                                        
Query: 440  gctgaaggatcttcatatgctaggatatgtgccagggcaacatctttaacgtttacccat 499
            ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 916  gctgaaggaacttcatatgcaaggatatgtgccagggcaacatccttaacgtttatccag 857

                          
Query: 500  ccaaagcagaaatt 513
            ||||||| ||||||
Sbjct: 856  ccaaagctgaaatt 843
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>dbj|AK059305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F12, full
            insert sequence
          Length = 1322

 Score =  218 bits (110), Expect = 1e-53
 Identities = 263/314 (83%)
 Strand = Plus / Minus

                                                                        
Query: 200  tcaaaagtcagaaatcctttctctttcaaactctcgatagtctccttgaggctcgtctcc 259
            |||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| | |
Sbjct: 1168 tcaaaagtaacaaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgc 1109

                                                                        
Query: 260  aggggaatcagctccatgcccagacttcttatcttgtcctttgacacttggtagattgtg 319
            |||||| |||| |||| |||||  ||| ||||||| |||||||| || ||||||||||  
Sbjct: 1108 aggggagtcagttccaggcccaagctttttatcttttcctttgatacctggtagattggc 1049

                                                                        
Query: 320  gcaaaaggagcgtcatctgcacacttgtctggcactggaaattcaggatacatctcgtgt 379
             |  | ||   |||||||||||||||||||||||  ||||  |  |||||||||||  | 
Sbjct: 1048 actgatggcttgtcatctgcacacttgtctggcagaggaatattgggatacatctcacga 989

                                                                        
Query: 380  atgatcttgacaaggtccgagtggtgaatgactctttcaaccatgcaatatcttccgttt 439
            ||||| | ||| || || |||| |||    |||||||||||||||||||||||||| |||
Sbjct: 988  atgatttggacgagctctgagtagtgcgcaactctttcaaccatgcaatatcttccattt 929

                                                                        
Query: 440  gctgaaggatcttcatatgctaggatatgtgccagggcaacatctttaacgtttacccat 499
            ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| 
Sbjct: 928  gctgaaggaacttcatatgcaaggatatgtgccagggcaacatccttaacgtttatccag 869

                          
Query: 500  ccaaagcagaaatt 513
            ||||||| ||||||
Sbjct: 868  ccaaagctgaaatt 855
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 3e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                            
Query: 410      actctttcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgt 469
                |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 19009649 actctttcaaccatgcaatatcttccatttgctgaaggaacttcatatgcaaggatatgt 19009590

                                                            
Query: 470      gccagggcaacatctttaacgtttacccatccaaagcagaaatt 513
                |||||||||||||| |||||||||| ||| ||||||| ||||||
Sbjct: 19009589 gccagggcaacatccttaacgtttatccagccaaagctgaaatt 19009546



 Score =  107 bits (54), Expect = 4e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                            
Query: 200      tcaaaagtcagaaatcctttctctttcaaactctcgatagtctccttgaggctcgtctcc 259
                |||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| | |
Sbjct: 19010092 tcaaaagtaacaaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgc 19010033

                                                                          
Query: 260      aggggaatcagctccatgcccagacttcttatcttgtcctttgacacttggtagattg 317
                |||||| |||| |||| |||||  ||| ||||||| |||||||| || ||||||||||
Sbjct: 19010032 aggggagtcagttccaggcccaagctttttatcttttcctttgatacctggtagattg 19009975
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>dbj|AP003370.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1129H01
          Length = 101104

 Score =  151 bits (76), Expect = 3e-33
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                         
Query: 410   actctttcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgt 469
             |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 66692 actctttcaaccatgcaatatcttccatttgctgaaggaacttcatatgcaaggatatgt 66633

                                                         
Query: 470   gccagggcaacatctttaacgtttacccatccaaagcagaaatt 513
             |||||||||||||| |||||||||| ||| ||||||| ||||||
Sbjct: 66632 gccagggcaacatccttaacgtttatccagccaaagctgaaatt 66589



 Score =  107 bits (54), Expect = 4e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                         
Query: 200   tcaaaagtcagaaatcctttctctttcaaactctcgatagtctccttgaggctcgtctcc 259
             |||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| | |
Sbjct: 67135 tcaaaagtaacaaatcctttctctttcaagctctcgatggtctccttgatgctcgtgtgc 67076

                                                                       
Query: 260   aggggaatcagctccatgcccagacttcttatcttgtcctttgacacttggtagattg 317
             |||||| |||| |||| |||||  ||| ||||||| |||||||| || ||||||||||
Sbjct: 67075 aggggagtcagttccaggcccaagctttttatcttttcctttgatacctggtagattg 67018
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>gb|AY106077.1| Zea mays PCO149989 mRNA sequence
          Length = 1282

 Score =  129 bits (65), Expect = 1e-26
 Identities = 239/297 (80%)
 Strand = Plus / Minus

                                                                        
Query: 218  ttctctttcaaactctcgatagtctccttgaggctcgtctccaggggaatcagctccatg 277
            ||||||||||| || ||||| |||||||||| |||||||||||| ||||||| ||| |||
Sbjct: 1087 ttctctttcaagctttcgatggtctccttgacgctcgtctccagtggaatcaactcgatg 1028

                                                                        
Query: 278  cccagacttcttatcttgtcctttgacacttggtagattgtggcaaaaggagcgtcatct 337
            || |  ||| ||||||| |||||||| |||||||||  || | |||| ||   |||||||
Sbjct: 1027 cctatgctttttatcttctcctttgatacttggtagggtgggacaaacggcttgtcatct 968

                                                                        
Query: 338  gcacacttgtctggcactggaaattcaggatacatctcgtgtatgatcttgacaaggtcc 397
            ||||||||||| || |  ||||    ||||||||| | | | || || || || || || 
Sbjct: 967  gcacacttgtccggaagaggaagggtaggatacatgttgcggataatgttcaccagttct 908

                                                                        
Query: 398  gagtggtgaatgactctttcaaccatgcaatatcttccgtttgctgaaggatcttcatat 457
            |||| |||||  |||||||| |||||||| || ||||| |||| ||| ||| | || |||
Sbjct: 907  gagtagtgaacaactctttccaccatgcagtaccttccatttgatgagggaacctcgtat 848

                                                                     
Query: 458  gctaggatatgtgccagggcaacatctttaacgtttacccatccaaagcagaaattg 514
            || |||||||| |||||||||||||| || || || |||||||||||||| ||||||
Sbjct: 847  gcaaggatatgggccagggcaacatccttgacattaacccatccaaagcaaaaattg 791
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>gb|AY911854.1| Nicotiana tabacum cinnamyl alcohol dehydrogenase 1 (CAD1-1) mRNA,
           complete cds
          Length = 972

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                       
Query: 416 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 475
           ||||||||  ||||||| || || |||||||| | |||| ||||||| ||||| || |||
Sbjct: 752 tcaaccattaaatatctaccattagctgaagggttttcaaatgctagaatatgcgcgagg 693

                                       
Query: 476 gcaacatctttaacgtttacccatccaa 503
           ||||||||||| || || ||||||||||
Sbjct: 692 gcaacatctttcacattaacccatccaa 665
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>gb|AY362455.1| Quercus suber NADPH-dependent cinnamyl alcohol dehydrogenase (CAD1)
           mRNA, complete cds
          Length = 1378

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 416 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 475
           |||||||  |||||||||||  | |||| ||||  |||||||||| | ||||||||   |
Sbjct: 818 tcaaccaaacaatatcttccactagctgtaggaatttcatatgcttgaatatgtgcattg 759

                                        
Query: 476 gcaacatctttaacgtttacccatccaaa 504
           ||||||||||| || || |||||||||||
Sbjct: 758 gcaacatctttgacattaacccatccaaa 730
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>emb|AM160602.1| Quercus ilex mRNA for cinnamyl alcohol dehydrogenase (cad gene)
          Length = 1225

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 416 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 475
           |||||||  |||||||||||  | |||| ||||  |||||||||| | ||||||||   |
Sbjct: 790 tcaaccaaacaatatcttccactagctgtaggaatttcatatgcttgaatatgtgcattg 731

                                        
Query: 476 gcaacatctttaacgtttacccatccaaa 504
           ||||||||||| || || |||||||||||
Sbjct: 730 gcaacatctttgacattaacccatccaaa 702
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>emb|AM160601.1| Quercus suber mRNA for cinnamyl alcohol dehydrogenase (cad gene)
          Length = 1378

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                       
Query: 416 tcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagg 475
           |||||||  |||||||||||  | |||| ||||  |||||||||| | ||||||||   |
Sbjct: 818 tcaaccaaacaatatcttccactagctgtaggaatttcatatgcttgaatatgtgcattg 759

                                        
Query: 476 gcaacatctttaacgtttacccatccaaa 504
           ||||||||||| || || |||||||||||
Sbjct: 758 gcaacatctttgacattaacccatccaaa 730
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>gb|AF033851.1| Vigna radiata aldehyde reductase mRNA, complete cds
          Length = 1267

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                       
Query: 426 aatatcttccgtttgctgaaggatcttcatatgctaggatatgtgccagggcaacatctt 485
           |||||||||| || || |||| ||  ||||||||||| ||||| ||||  ||||||||||
Sbjct: 785 aatatcttccattagccgaagcattctcatatgctagaatatgggccaatgcaacatctt 726

                           
Query: 486 taacgtttacccatcc 501
           | ||||  ||||||||
Sbjct: 725 tcacgtcgacccatcc 710
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>gb|AC005296.2| Homo sapiens X BAC GS1-214D18 (Genome Systems Human BAC Library)
             complete sequence
          Length = 191503

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 288   ttatcttgtcctttgacacttg 309
             ||||||||||||||||||||||
Sbjct: 12546 ttatcttgtcctttgacacttg 12567
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>gb|AF053084.1|AF053084 Malus domestica putative cinnamyl alcohol dehydrogenase (CAD) mRNA,
           complete cds
          Length = 1262

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 475 ggcaacatctttaacgtttacccatccaaa 504
           |||||||||||||||||| | |||||||||
Sbjct: 717 ggcaacatctttaacgttaatccatccaaa 688
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>gb|U69694.1|BOU69694 Brassica oleracea ATP-sulfurylase precursor (ASBo) gene, complete
           cds
          Length = 2807

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 aaagcaaagaaagtttcacaga 190
           ||||||||||||||||||||||
Sbjct: 133 aaagcaaagaaagtttcacaga 154
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>emb|AM159095.1| Plantago major mRNA for cinnamoyl alcohol dehydrogenase (cad2 gene)
          Length = 1242

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 76/94 (80%)
 Strand = Plus / Minus

                                                                       
Query: 410 actctttcaaccatgcaatatcttccgtttgctgaaggatcttcatatgctaggatatgt 469
           ||||| |||||||||  |||||||||  ||||||| |||   |||||||| |||||||||
Sbjct: 847 actctctcaaccatgacatatcttccacttgctgatggagtctcatatgccaggatatgt 788

                                             
Query: 470 gccagggcaacatctttaacgtttacccatccaa 503
            |    ||||||||||| || || ||||||||||
Sbjct: 787 ccatttgcaacatctttcacattaacccatccaa 754
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>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence
          Length = 190474

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  atcctttctctttcaaactc 232
            ||||||||||||||||||||
Sbjct: 7882 atcctttctctttcaaactc 7901
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>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence
          Length = 157891

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    atcctttctctttcaaactc 232
              ||||||||||||||||||||
Sbjct: 108239 atcctttctctttcaaactc 108258
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>gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, complete sequence
          Length = 215675

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    aaagcaaagaaagtttcaca 188
              ||||||||||||||||||||
Sbjct: 177013 aaagcaaagaaagtttcaca 176994
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>emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacteriophage LE1
          Length = 73623

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   ttcaaactctcgatagtctc 243
             ||||||||||||||||||||
Sbjct: 42220 ttcaaactctcgatagtctc 42201
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>gb|AC158345.8| Mus musculus chromosome 7, clone RP23-271M19, complete sequence
          Length = 188354

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    aaagcaaagaaagtttcaca 188
              ||||||||||||||||||||
Sbjct: 144943 aaagcaaagaaagtttcaca 144962
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>gb|AC134432.4| Mus musculus BAC clone RP24-389K11 from chromosome 8, complete sequence
          Length = 150334

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     tccatcatacattcctgtgt 27
             ||||||||||||||||||||
Sbjct: 65795 tccatcatacattcctgtgt 65814
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>gb|AC158388.2| Mus musculus BAC clone RP24-545I9 from chromosome 14, complete sequence
          Length = 183148

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    caaaagtcagaaatcctttc 220
              ||||||||||||||||||||
Sbjct: 129347 caaaagtcagaaatcctttc 129328
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>ref|XM_396579.1| PREDICTED: Apis mellifera similar to ENSANGP00000003654
           (LOC413128), mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  ttatacatgtcttggaactc 52
           ||||||||||||||||||||
Sbjct: 772 ttatacatgtcttggaactc 791
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>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence
          Length = 149172

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 202  aaaagtcagaaatcctttctcttt 225
            |||||||||||||||| |||||||
Sbjct: 2775 aaaagtcagaaatcctatctcttt 2798
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>gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, complete sequence
          Length = 166870

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 202   aaaagtcagaaatcctttctcttt 225
             |||||||||||||||| |||||||
Sbjct: 92967 aaaagtcagaaatcctatctcttt 92944
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>gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome 14, complete sequence
          Length = 195046

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    cctttctctttcaaactctc 234
              ||||||||||||||||||||
Sbjct: 160997 cctttctctttcaaactctc 161016
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>gb|AF066054.1|AF066054 Pichia pastoris formaldehyde dehydrogenase (FLD1) gene, complete cds
          Length = 2774

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 7    atccatcatacattcctgtg 26
            ||||||||||||||||||||
Sbjct: 2195 atccatcatacattcctgtg 2214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,556,270
Number of Sequences: 3902068
Number of extensions: 4556270
Number of successful extensions: 80005
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79943
Number of HSP's gapped (non-prelim): 62
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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