Clone Information

BLAST Search Result

Clone Name	rbart39f01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_468420.1\| Oryza sativa (japonica cultivar-group), mRNA	111	2e-21
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
3	dbj\|AP004048.3\| Oryza sativa (japonica cultivar-group) genomic D...	76	1e-10
4	dbj\|AP004028.3\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.11
5	gb\|AC012564.21\| Homo sapiens chromosome 8, clone RP11-85M22, com...	44	0.45
6	gb\|AC090827.11\| Homo sapiens chromosome 8, clone CTD-2594K21, co...	44	0.45
7	gb\|AC093326.3\| Homo sapiens BAC clone RP11-625N16 from 2, comple...	44	0.45
8	gb\|AC159134.3\| Pan troglodytes BAC clone CH251-80P13 from chromo...	44	0.45
9	dbj\|AP004716.1\| Homo sapiens genomic DNA, chromosome 8q23, clone...	44	0.45
10	gb\|AC154193.2\| Mus musculus BAC clone RP24-398A6 from chromosome...	42	1.8
11	gb\|AC131678.4\| Mus musculus BAC clone RP23-333L1 from chromosome...	42	1.8
12	emb\|CT009539.5\| Mouse DNA sequence from clone RP23-10G6 on chrom...	42	1.8
13	emb\|AL645766.5\| Mouse DNA sequence from clone RP23-41B10 on chro...	42	1.8
14	gb\|AC098480.2\| Homo sapiens chromosome 3 clone RP11-149J4, compl...	42	1.8
15	emb\|BX119909.5\| Zebrafish DNA sequence from clone CH211-223I3 in...	42	1.8
16	gb\|AE017343.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	7.1
17	gb\|AC124538.4\| Mus musculus BAC clone RP23-338P10 from chromosom...	40	7.1
18	gb\|AC124470.4\| Mus musculus BAC clone RP24-174O2 from chromosome...	40	7.1
19	gb\|AC136717.10\| Mus musculus chromosome 7, clone RP23-48C24, com...	40	7.1
20	gb\|AC108435.5\| Mus musculus chromosome 7, clone RP23-229O20, com...	40	7.1
21	emb\|Z98172.1\|HS234H5 Human DNA sequence from clone RP1-234H5 on ...	40	7.1
22	emb\|AL353597.20\| Human DNA sequence from clone RP1-153P14 on chr...	40	7.1
23	emb\|AL109836.27\|HSBA243C2 Human DNA sequence from clone RP11-243...	40	7.1
24	gb\|AC130388.6\| Drosophila melanogaster X BAC CH221-14P20 (Childr...	40	7.1
25	gb\|AC023714.5\| Drosophila melanogaster X BAC RP98-19D19 (Roswell...	40	7.1
26	emb\|AL606633.3\|OSJN00060 Oryza sativa genomic DNA, chromosome 4,...	40	7.1
27	emb\|BX548022.6\| Zebrafish DNA sequence from clone DKEY-108E7 in ...	40	7.1
28	gb\|AY118837.1\| Drosophila melanogaster GM09909 full insert cDNA	40	7.1
29	gb\|AC152936.21\| Medicago truncatula clone mth2-47n14, complete s...	40	7.1
30	gb\|AC109584.2\| Homo sapiens chromosome 3 clone RP11-674P14, comp...	40	7.1
31	ref\|NM_166989.3\| Drosophila melanogaster CG2947-RB, transcript v...	40	7.1
32	ref\|NM_166988.3\| Drosophila melanogaster CG2947-RA, transcript v...	40	7.1
33	ref\|NM_130718.3\| Drosophila melanogaster CG32789-RA (CG32789), mRNA	40	7.1
34	gb\|AC091931.2\| Homo sapiens chromosome 5 clone RP11-313L6, compl...	40	7.1
35	ref\|NM_001014719.1\| Drosophila melanogaster CG2947-RC, transcrip...	40	7.1
36	gb\|AC092797.2\| Homo sapiens chromosome 3 clone RP11-452E8, compl...	40	7.1
37	gb\|AC024132.7\| Homo sapiens BAC clone RP11-415C15 from 4, comple...	40	7.1
38	gb\|AC010735.11\| Homo sapiens BAC clone RP11-395N3 from 2, comple...	40	7.1
39	emb\|BX323074.14\| Zebrafish DNA sequence from clone RP71-26B20, c...	40	7.1
40	gb\|AC107627.3\| Homo sapiens chromosome 1 clone RP1-281L18, compl...	40	7.1
41	gb\|AY051998.1\| Drosophila melanogaster LD46530 full length cDNA	40	7.1
42	gb\|AC131183.4\| Mus musculus BAC clone RP23-225A14 from chromosom...	40	7.1
43	gb\|AF256787.1\|AF256787 Salmo salar clone BHMS227 microsatellite ...	40	7.1
44	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.1
45	gb\|AC105313.3\| Homo sapiens BAC clone RP11-30P21 from 4, complet...	40	7.1
46	emb\|BX530067.4\| Zebrafish DNA sequence from clone DKEY-194C21 in...	40	7.1
47	gb\|AC069557.5\|AC069557 Genomic Sequence For Arabidopsis thaliana...	40	7.1
48	gb\|AC102106.14\| Mus musculus chromosome 18, clone RP23-92B24, co...	40	7.1
49	emb\|BX005277.11\| Zebrafish DNA sequence from clone CH211-167H2, ...	40	7.1
50	dbj\|AB046438.1\| Arabidopsis thaliana DNA, chromosome 5 centromer...	40	7.1
51	emb\|AL592183.10\| Human DNA sequence from clone RP11-297D8 on chr...	40	7.1
52	gb\|AE001439.1\| Helicobacter pylori J99, complete genome	40	7.1
53	gb\|AC155287.6\| Mus musculus 6 BAC RP23-103G18 (Roswell Park Canc...	40	7.1
54	gb\|AE003429.4\| Drosophila melanogaster chromosome X, section 13 ...	40	7.1
55	emb\|BX004784.9\| Zebrafish DNA sequence from clone DKEY-82I7 in l...	40	7.1
56	emb\|CR628371.8\| Zebrafish DNA sequence from clone CH211-250J16 i...	40	7.1
57	emb\|AL929172.6\| Zebrafish DNA sequence from clone DKEYP-46C10 in...	40	7.1
58	emb\|AJ544607.1\|TRU544607 Takifugu rubripes dmd gene for putative...	40	7.1
59	dbj\|AB217365.1\| Equus caballus DNA, microsatellite TKY3422	40	7.1

>ref|XM_468420.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1470

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                       
Query: 399 gctttgaggtccatcatgtaaagatttatgctaggatgttgatatttagcatccatcttt 458
           |||||| ||||||| ||||||||||  || ||||||||||| |||||  |||||||||| 
Sbjct: 728 gctttggggtccattatgtaaagatgaatactaggatgttggtatttcacatccatcttc 669

                                                                       
Query: 459 gatttggatatagttttcacattaaagttggttttccacatttccatcatctgctcatgg 518
           ||||| || |  |||||||||||||| ||| |||||||||||| ||||||||| ||||||
Sbjct: 668 gatttcgagacggttttcacattaaaattgcttttccacatttgcatcatctgttcatgg 609

               
Query: 519 acag 522
           ||||
Sbjct: 608 acag 605



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 209 atccttgagaagtcttgcagccatggccccggacctcctgatttcccagtcgtc 262
           |||||| ||||||||||||||||| |||||| | || |||||||||||||||||
Sbjct: 936 atccttaagaagtcttgcagccatagccccgcatcttctgatttcccagtcgtc 883

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                          
Query: 205      tgacatccttgagaagtcttgcagccatggccccggacctcctgatttcccagtcgtc 262
                |||||||||| ||||||||||||||||| |||||| | || |||||||||||||||||
Sbjct: 35138669 tgacatccttaagaagtcttgcagccatagccccgcatcttctgatttcccagtcgtc 35138726



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 471      gttttcacattaaagttggttttccacatttccatcatctgctcatggacag 522
                |||||||||||||| ||| |||||||||||| ||||||||| ||||||||||
Sbjct: 35139069 gttttcacattaaaattgcttttccacatttgcatcatctgttcatggacag 35139120



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 399      gctttgaggtccatcatgtaaagatttatgctaggatgttgatatttagcatccatct 456
                |||||| ||||||| ||||||||||  || ||||||||||| |||||  |||||||||
Sbjct: 35138881 gctttggggtccattatgtaaagatgaatactaggatgttggtatttcacatccatct 35138938



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 200      tagcctgacatccttgagaagtcttgcagccatggcccc 238
                |||| ||||||||| |||||||||||| ||||| |||||
Sbjct: 35121018 tagcttgacatcctagagaagtcttgctgccatagcccc 35121056

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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                       
Query: 205   tgacatccttgagaagtcttgcagccatggccccggacctcctgatttcccagtcgtc 262
             |||||||||| ||||||||||||||||| |||||| | || |||||||||||||||||
Sbjct: 34025 tgacatccttaagaagtcttgcagccatagccccgcatcttctgatttcccagtcgtc 34082



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 471   gttttcacattaaagttggttttccacatttccatcatctgctcatggacag 522
             |||||||||||||| ||| |||||||||||| ||||||||| ||||||||||
Sbjct: 34425 gttttcacattaaaattgcttttccacatttgcatcatctgttcatggacag 34476



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 399   gctttgaggtccatcatgtaaagatttatgctaggatgttgatatttagcatccatct 456
             |||||| ||||||| ||||||||||  || ||||||||||| |||||  |||||||||
Sbjct: 34237 gctttggggtccattatgtaaagatgaatactaggatgttggtatttcacatccatct 34294



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 200   tagcctgacatccttgagaagtcttgcagccatggcccc 238
             |||| ||||||||| |||||||||||| ||||| |||||
Sbjct: 16374 tagcttgacatcctagagaagtcttgctgccatagcccc 16412

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>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1136_C12
          Length = 103973

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 200   tagcctgacatccttgagaagtcttgcagccatggcccc 238
             |||| ||||||||| |||||||||||| ||||| |||||
Sbjct: 94181 tagcttgacatcctagagaagtcttgctgccatagcccc 94219

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>gb|AC012564.21| Homo sapiens chromosome 8, clone RP11-85M22, complete sequence
          Length = 207682

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 136   atgtgcccacgcacacacacagaaac 161
             |||||||||| |||||||||||||||
Sbjct: 70289 atgtgcccacacacacacacagaaac 70264

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>gb|AC090827.11| Homo sapiens chromosome 8, clone CTD-2594K21, complete sequence
          Length = 135010

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 136    atgtgcccacgcacacacacagaaac 161
              |||||||||| |||||||||||||||
Sbjct: 132498 atgtgcccacacacacacacagaaac 132473

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>gb|AC093326.3| Homo sapiens BAC clone RP11-625N16 from 2, complete sequence
          Length = 188711

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 138   gtgcccacgcacacacacagaaacat 163
             ||||||||||||||||||||| ||||
Sbjct: 27980 gtgcccacgcacacacacagacacat 27955

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>gb|AC159134.3| Pan troglodytes BAC clone CH251-80P13 from chromosome unknown, complete
              sequence
          Length = 182033

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 135    catgtgcccacgcacacacacagaaa 160
              ||||||| ||||||||||||||||||
Sbjct: 157057 catgtgcacacgcacacacacagaaa 157032

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>dbj|AP004716.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1987G5
          Length = 189987

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 136    atgtgcccacgcacacacacagaaac 161
              |||||||||| |||||||||||||||
Sbjct: 109422 atgtgcccacacacacacacagaaac 109397

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>gb|AC154193.2| Mus musculus BAC clone RP24-398A6 from chromosome 14, complete sequence
          Length = 161686

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     gaataggaccagtaaattaaa 95
              |||||||||||||||||||||
Sbjct: 119721 gaataggaccagtaaattaaa 119701

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>gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome 3, complete sequence
          Length = 203750

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 487   tggttttccacatttccatcatctg 511
             ||||||||| |||||||||||||||
Sbjct: 96714 tggttttcctcatttccatcatctg 96738

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>emb|CT009539.5| Mouse DNA sequence from clone RP23-10G6 on chromosome 14, complete
             sequence
          Length = 170619

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    gaataggaccagtaaattaaa 95
             |||||||||||||||||||||
Sbjct: 86676 gaataggaccagtaaattaaa 86656

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>emb|AL645766.5| Mouse DNA sequence from clone RP23-41B10 on chromosome 2 Contains a
             novel gene C330008G21Rik, complete sequence
          Length = 73575

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   cacgcacacacacagaaacat 163
             |||||||||||||||||||||
Sbjct: 22335 cacgcacacacacagaaacat 22315

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>gb|AC098480.2| Homo sapiens chromosome 3 clone RP11-149J4, complete sequence
          Length = 188681

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 162   atcaaactgggtagagttcaa 182
             |||||||||||||||||||||
Sbjct: 46773 atcaaactgggtagagttcaa 46793

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>emb|BX119909.5| Zebrafish DNA sequence from clone CH211-223I3 in linkage group 6,
             complete sequence
          Length = 221755

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   cacacacacagaaacatcaaa 167
             |||||||||||||||||||||
Sbjct: 61554 cacacacacagaaacatcaaa 61534

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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 198    gttagcctgacatccttgagaagt 221
              ||||||||||||||| ||||||||
Sbjct: 475613 gttagcctgacatccatgagaagt 475590

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>gb|AC124538.4| Mus musculus BAC clone RP23-338P10 from chromosome 1, complete sequence
          Length = 181512

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    cacgcacacacacagaaaca 162
              ||||||||||||||||||||
Sbjct: 133052 cacgcacacacacagaaaca 133071

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>gb|AC124470.4| Mus musculus BAC clone RP24-174O2 from chromosome 6, complete sequence
          Length = 187005

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    agttggttttccacatttcc 503
              ||||||||||||||||||||
Sbjct: 123316 agttggttttccacatttcc 123335

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>gb|AC136717.10| Mus musculus chromosome 7, clone RP23-48C24, complete sequence
          Length = 222854

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  cacacacagaaacatcaaac 168
            ||||||||||||||||||||
Sbjct: 9236 cacacacagaaacatcaaac 9217

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>gb|AC108435.5| Mus musculus chromosome 7, clone RP23-229O20, complete sequence
          Length = 203281

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    cacacacagaaacatcaaac 168
              ||||||||||||||||||||
Sbjct: 131846 cacacacagaaacatcaaac 131827

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>emb|Z98172.1|HS234H5 Human DNA sequence from clone RP1-234H5 on chromosome 6q21 Contains the
             3' end of the gene for \, complete sequence
          Length = 102230

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 135   catgtgcccacgcacacacacagaaaca 162
             ||||||| ||| ||||||||||||||||
Sbjct: 99872 catgtgcacacacacacacacagaaaca 99899

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>emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chromosome 6 Contains the
              gene for a novel protein (containing KIAA0082, FLJ22156 and
              FLJ20341), three novel genes, the gene for a novel protein
              and three CpG islands, complete sequence
          Length = 162451

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 129    caccaccatgtgcccacgcacacacaca 156
              ||||||||||||| ||||| ||||||||
Sbjct: 153811 caccaccatgtgcacacgcgcacacaca 153838

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>emb|AL109836.27|HSBA243C2 Human DNA sequence from clone RP11-243C2 on chromosome Xq27.1-28
            Contains two novel genes, complete sequence
          Length = 72594

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cacgcacacacacagaaaca 162
            ||||||||||||||||||||
Sbjct: 8816 cacgcacacacacagaaaca 8835

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>gb|AC130388.6| Drosophila melanogaster X BAC CH221-14P20 (Children's Hospital Oakland
             Research Institute Drosophila melanogaster sheared DNA BAC
             Library) complete sequence
          Length = 117795

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tcttgttgattcgtttattt 22
             ||||||||||||||||||||
Sbjct: 58300 tcttgttgattcgtttattt 58281



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tcttgttgattcgtttattt 22
             ||||||||||||||||||||
Sbjct: 49207 tcttgttgattcgtttattt 49188

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>gb|AC023714.5| Drosophila melanogaster X BAC RP98-19D19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 160100

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tcttgttgattcgtttattt 22
              ||||||||||||||||||||
Sbjct: 152742 tcttgttgattcgtttattt 152761



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      tcttgttgattcgtttattt 22
              ||||||||||||||||||||
Sbjct: 143649 tcttgttgattcgtttattt 143668

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>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02,
             complete sequence
          Length = 173522

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   cacgcacacacacagaaaca 162
             ||||||||||||||||||||
Sbjct: 77726 cacgcacacacacagaaaca 77745

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>emb|BX548022.6| Zebrafish DNA sequence from clone DKEY-108E7 in linkage group 24,
             complete sequence
          Length = 133412

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 135   catgtgcccacgcacacacacagaaaca 162
             ||||||| |||||||||||||| |||||
Sbjct: 39703 catgtgcacacgcacacacacacaaaca 39676

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>gb|AY118837.1| Drosophila melanogaster GM09909 full insert cDNA
          Length = 1023

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 3   tcttgttgattcgtttattt 22
           ||||||||||||||||||||
Sbjct: 999 tcttgttgattcgtttattt 980

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>gb|AC152936.21| Medicago truncatula clone mth2-47n14, complete sequence
          Length = 130801

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gatatagttttcacattaaa 484
             ||||||||||||||||||||
Sbjct: 57566 gatatagttttcacattaaa 57547

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>gb|AC109584.2| Homo sapiens chromosome 3 clone RP11-674P14, complete sequence
          Length = 179199

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tcaagatcaactttgtgtca 64
             ||||||||||||||||||||
Sbjct: 79765 tcaagatcaactttgtgtca 79746

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>ref|NM_166989.3| Drosophila melanogaster CG2947-RB, transcript variant B (CG2947),
            mRNA
          Length = 2071

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    tcttgttgattcgtttattt 22
            ||||||||||||||||||||
Sbjct: 2065 tcttgttgattcgtttattt 2046

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>ref|NM_166988.3| Drosophila melanogaster CG2947-RA, transcript variant A (CG2947),
            mRNA
          Length = 2018

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    tcttgttgattcgtttattt 22
            ||||||||||||||||||||
Sbjct: 2012 tcttgttgattcgtttattt 1993

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>ref|NM_130718.3| Drosophila melanogaster CG32789-RA (CG32789), mRNA
          Length = 2056

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    tcttgttgattcgtttattt 22
            ||||||||||||||||||||
Sbjct: 2047 tcttgttgattcgtttattt 2028

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>gb|AC091931.2| Homo sapiens chromosome 5 clone RP11-313L6, complete sequence
          Length = 185844

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   tccttgagaagtcttgcagc 229
             ||||||||||||||||||||
Sbjct: 47284 tccttgagaagtcttgcagc 47303

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>ref|NM_001014719.1| Drosophila melanogaster CG2947-RC, transcript variant C (CG2947),
            mRNA
          Length = 2067

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    tcttgttgattcgtttattt 22
            ||||||||||||||||||||
Sbjct: 2061 tcttgttgattcgtttattt 2042

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>gb|AC092797.2| Homo sapiens chromosome 3 clone RP11-452E8, complete sequence
          Length = 200278

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tcaagatcaactttgtgtca 64
             ||||||||||||||||||||
Sbjct: 31645 tcaagatcaactttgtgtca 31626

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>gb|AC024132.7| Homo sapiens BAC clone RP11-415C15 from 4, complete sequence
          Length = 151552

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cacgcacacacacagaaaca 162
             ||||||||||||||||||||
Sbjct: 13106 cacgcacacacacagaaaca 13087

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>gb|AC010735.11| Homo sapiens BAC clone RP11-395N3 from 2, complete sequence
          Length = 211980

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    tgtgcccacgcacacacacagaaa 160
              ||||||||| ||||||||||||||
Sbjct: 141321 tgtgcccacacacacacacagaaa 141298

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>emb|BX323074.14| Zebrafish DNA sequence from clone RP71-26B20, complete sequence
          Length = 153860

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 135   catgtgcccacgcacacacacagaaaca 162
             ||||||| |||||||||||||| |||||
Sbjct: 78509 catgtgcacacgcacacacacacaaaca 78482

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>gb|AC107627.3| Homo sapiens chromosome 1 clone RP1-281L18, complete sequence
          Length = 90509

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tgcccacgcacacacacaga 158
             ||||||||||||||||||||
Sbjct: 40958 tgcccacgcacacacacaga 40977

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>gb|AY051998.1| Drosophila melanogaster LD46530 full length cDNA
          Length = 2091

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    tcttgttgattcgtttattt 22
            ||||||||||||||||||||
Sbjct: 2036 tcttgttgattcgtttattt 2017

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>gb|AC131183.4| Mus musculus BAC clone RP23-225A14 from chromosome 12, complete
             sequence
          Length = 141293

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cacgcacacacacagaaaca 162
             ||||||||||||||||||||
Sbjct: 49699 cacgcacacacacagaaaca 49680

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>gb|AF256787.1|AF256787 Salmo salar clone BHMS227 microsatellite sequence
          Length = 368

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 cacgcacacacacagaaaca 162
           ||||||||||||||||||||
Sbjct: 261 cacgcacacacacagaaaca 280

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 143      cacgcacacacacagaaaca 162
                ||||||||||||||||||||
Sbjct: 27647097 cacgcacacacacagaaaca 27647116

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>gb|AC105313.3| Homo sapiens BAC clone RP11-30P21 from 4, complete sequence
          Length = 145240

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   cacgcacacacacagaaaca 162
             ||||||||||||||||||||
Sbjct: 60398 cacgcacacacacagaaaca 60417

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>emb|BX530067.4| Zebrafish DNA sequence from clone DKEY-194C21 in linkage group 19,
              complete sequence
          Length = 203882

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 490    ttttccacatttccatcatctgct 513
              ||||||||||| ||||||||||||
Sbjct: 104142 ttttccacattcccatcatctgct 104165

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>gb|AC069557.5|AC069557 Genomic Sequence For Arabidopsis thaliana Clone T29A4 From Chromosome
             V, complete sequence
          Length = 121501

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   ttggttttccacatttccat 505
             ||||||||||||||||||||
Sbjct: 69326 ttggttttccacatttccat 69307

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>gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, complete sequence
          Length = 230823

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    cacgcacacacacagaaaca 162
              ||||||||||||||||||||
Sbjct: 108471 cacgcacacacacagaaaca 108490

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>emb|BX005277.11| Zebrafish DNA sequence from clone CH211-167H2, complete sequence
          Length = 137475

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  catgtgcccacgcacacacacaga 158
            ||||||| ||||||||||||||||
Sbjct: 4666 catgtgcacacgcacacacacaga 4643

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>dbj|AB046438.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T3E2
          Length = 77204

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   ttggttttccacatttccat 505
             ||||||||||||||||||||
Sbjct: 23085 ttggttttccacatttccat 23104

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>emb|AL592183.10| Human DNA sequence from clone RP11-297D8 on chromosome 22, complete
             sequence
          Length = 179198

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   caccatgtgcccacgcacacacac 155
             |||||||||| |||||||||||||
Sbjct: 50972 caccatgtgcacacgcacacacac 50995



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   caccatgtgcccacgcacacacac 155
             |||||||||| |||||||||||||
Sbjct: 50916 caccatgtgcacacgcacacacac 50939

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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     catctttgatttggatatag 471
               ||||||||||||||||||||
Sbjct: 1613091 catctttgatttggatatag 1613110

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>gb|AC155287.6| Mus musculus 6 BAC RP23-103G18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221335

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    catgtgcccacgcacacaca 154
              ||||||||||||||||||||
Sbjct: 124936 catgtgcccacgcacacaca 124917

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>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
             sequence
          Length = 326403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tcttgttgattcgtttattt 22
             ||||||||||||||||||||
Sbjct: 34604 tcttgttgattcgtttattt 34585



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tcttgttgattcgtttattt 22
             ||||||||||||||||||||
Sbjct: 25511 tcttgttgattcgtttattt 25492

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>emb|BX004784.9| Zebrafish DNA sequence from clone DKEY-82I7 in linkage group 25,
             complete sequence
          Length = 160429

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cacgcacacacacagaaaca 162
             ||||||||||||||||||||
Sbjct: 84235 cacgcacacacacagaaaca 84216

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>emb|CR628371.8| Zebrafish DNA sequence from clone CH211-250J16 in linkage group 10,
              complete sequence
          Length = 153880

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 74     tgaataggaccagtaaattaaact 97
              ||||||||| ||||||||||||||
Sbjct: 107244 tgaataggagcagtaaattaaact 107267

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>emb|AL929172.6| Zebrafish DNA sequence from clone DKEYP-46C10 in linkage group 25,
            complete sequence
          Length = 182666

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cacgcacacacacagaaaca 162
            ||||||||||||||||||||
Sbjct: 5652 cacgcacacacacagaaaca 5671

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>emb|AJ544607.1|TRU544607 Takifugu rubripes dmd gene for putative dystrophin, intron 1,
            fragment 3
          Length = 4946

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  cacgcacacacacagaaaca 162
            ||||||||||||||||||||
Sbjct: 1251 cacgcacacacacagaaaca 1270

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>dbj|AB217365.1| Equus caballus DNA, microsatellite TKY3422
          Length = 266

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 cacacacacagaaacatcaa 166
           ||||||||||||||||||||
Sbjct: 220 cacacacacagaaacatcaa 201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,716,115
Number of Sequences: 3902068
Number of extensions: 5716115
Number of successful extensions: 175320
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175074
Number of HSP's gapped (non-prelim): 246
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result