>YJ22_SCHPO (Q9USJ2) Hypothetical UPF0198 protein C4B3.02c|
          Length = 129

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 278 VLSFRTGVSFHIFFIFFLSVLKLLSDVQFVLSLAPSLSLFIFCFG*FPLIKLFFP 114
           +  F   VSF +     L  +   S +   L   P +  F+ C G F L K+F+P
Sbjct: 48  IAGFSKSVSFFLRKDRMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNLFKVFYP 102

>DMD_CHICK (P11533) Dystrophin|
          Length = 3660

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 53   LKKSQFGKDRATELHKAL*TLEKRAL*GETTQNRI*KVKVTERVT-----KQTAHHSAVS 217
            LK+  F KD + +    +  L +R   G+T Q RI   +  E +       QT H++   
Sbjct: 1809 LKEEDFNKDMSEDDESTVKELLQR---GDTLQKRITDERKREEIKIKQQLLQTKHNALKD 1865

Query: 218  AHSKRK*KIYEMIHQY 265
              S+R+ K  E+ HQ+
Sbjct: 1866 LRSQRRKKALEISHQW 1881

>COG8_CAEEL (O44502) Putative conserved oligomeric Golgi complex component 8|
          Length = 743

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 156 ILFWVVSPHK--ALFSRV*RALCNSVALSFPNCDFF 55
           IL W+ S H   A FSR  R +C SVA  F  C  F
Sbjct: 432 ILTWLASSHSNSANFSRAVRIVCTSVAPFFEKCVAF 467

>SMC3_SCHPO (O42649) Structural maintenance of chromosome 3 (Cohesin complex|
           Psm3 subunit)
          Length = 1194

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 76  GQGNRITQGSLNSGKKSFMRGNYPKQNMKSESDGASDK 189
           G  NRI +  LNS K+S ++     Q +KS S G  ++
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQ 874

>Y1609_METJA (Q59004) Hypothetical ATP-binding protein MJ1609|
          Length = 374

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 43  KVLLKKITIWEGQGNRI--TQGSLNSGKKSFMR 135
           K + K ++I EG+ N I    GSLNSGK + MR
Sbjct: 8   KEINKILSIIEGEPNNIYFIYGSLNSGKSTLMR 40

>RGA3_SCHPO (O14014) Probable Rho-type GTPase-activating protein 3|
          Length = 969

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 194 TAHHSAVSAHSKRK*KIYEMIHQYENLALITKR 292
           T  HS+  A S+R   + E+  Q ENL  +TK+
Sbjct: 440 TNDHSSTPAQSERDSDVEELREQLENLTALTKK 472

>DMD_MOUSE (P11531) Dystrophin|
          Length = 3678

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +2

Query: 53   LKKSQFGKDRATELHKAL*TLEKRAL*GETTQNRI*KVKVTERVT-----KQTAHHSAVS 217
            LK+  F KD + +    +  L +R   G+  Q RI   +  E +       QT H++   
Sbjct: 1809 LKEEDFNKDMSEDNEGTVNELLQR---GDNLQQRITDERKREEIKIKQQLLQTKHNALKD 1865

Query: 218  AHSKRK*KIYEMIHQY 265
              S+R+ K  E+ HQ+
Sbjct: 1866 LRSQRRKKALEISHQW 1881

>UVRC_CAUCR (Q9A4F3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 640

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 79  QGNRITQGSLNSGKKSFMRGNYPKQNMKS 165
           QG     G + +G + FM+G Y K N+KS
Sbjct: 430 QGANAVGGMIVAGPEGFMKGQYRKFNIKS 458

>DMD_PIG (Q5GN48) Dystrophin|
          Length = 3674

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +2

Query: 53   LKKSQFGKDRATELHKAL*TLEKRAL*GETTQNRI*KVKVTERVT-----KQTAHHSAVS 217
            LK+  F KD + +    +  L +R   G+  Q RI   +  E +       QT H++   
Sbjct: 1803 LKEEDFNKDMSEDNEGTVKELLQR---GDNLQQRITDERKREEIKIKQQLLQTKHNALKD 1859

Query: 218  AHSKRK*KIYEMIHQY 265
              S+R+ K  E+ HQ+
Sbjct: 1860 LRSQRRKKALEISHQW 1875

>DMD_CANFA (O97592) Dystrophin|
          Length = 3680

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +2

Query: 53   LKKSQFGKDRATELHKAL*TLEKRAL*GETTQNRI*KVKVTERVT-----KQTAHHSAVS 217
            LK+  F KD + +    +  L +R   G+  Q RI   +  E +       QT H++   
Sbjct: 1809 LKEEDFNKDMSEDNEGTVKELLQR---GDNLQQRITDERKREEIKIKQQLLQTKHNALKD 1865

Query: 218  AHSKRK*KIYEMIHQY 265
              S+R+ K  E+ HQ+
Sbjct: 1866 LRSQRRKKALEISHQW 1881

>AFR1_YEAST (P33304) Protein AFR1|
          Length = 620

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 49  LLKKITIWEGQGNRITQGSLNSGKKSFMRGNYPKQNMKSESDGASDKTN 195
           +LKK+  W   GN  T+     GKK   R   P  +M + SDG S+  N
Sbjct: 322 VLKKL--WRTSGNSNTK----HGKKDTKRRRIPIDDMVTHSDGNSEAEN 364

>MPSF_CHICK (Q02173) M-protein, striated muscle|
          Length = 1450

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 96  TRLFKLWKKELYEGKLPKTEY 158
           T L  LWK  +YEGK P T Y
Sbjct: 815 TSLVLLWKAPVYEGKSPITGY 835

>PHLX_RABIT (Q05017) Phospholipase AdRab-B precursor (EC 3.1.-.-)|
          Length = 1458

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 86  LPCPSQIVIFLSSTLYTVQGF*SW 15
           + CP+Q+  FLS+   +VQGF +W
Sbjct: 691 ITCPNQVWPFLSTYKNSVQGFGTW 714

>DYN2_RAT (P39052) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 94  TQGSLNSGKKSFMR-GNYPKQNMKSESDGASDKT 192
           +Q  ++S K SF+R G YP+++     DGA + T
Sbjct: 609 SQEDVDSWKASFLRAGVYPEKDQAENEDGAQENT 642

>DYN2_MOUSE (P39054) Dynamin-2 (EC 3.6.5.5) (Dynamin UDNM)|
          Length = 870

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 94  TQGSLNSGKKSFMR-GNYPKQNMKSESDGASDKT 192
           +Q  ++S K SF+R G YP+++     DGA + T
Sbjct: 609 SQEDVDSWKASFLRAGVYPEKDQAENEDGAQENT 642

>DYN2_HUMAN (P50570) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 94  TQGSLNSGKKSFMR-GNYPKQNMKSESDGASDKT 192
           +Q  ++S K SF+R G YP+++     DGA + T
Sbjct: 609 SQEDVDSWKASFLRAGVYPEKDQAENEDGAQENT 642


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,490,231
Number of Sequences: 219361
Number of extensions: 588983
Number of successful extensions: 1548
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)