ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483821.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
3dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
4gb|AC104843.3| Homo sapiens BAC clone RP11-1246H4 from 7, comple... 46 0.045
5ref|NM_129249.1| Arabidopsis thaliana nucleic acid binding / zin... 44 0.18
6gb|AY091369.1| Arabidopsis thaliana unknown protein (At2g36930) ... 44 0.18
7gb|AY045831.1| Arabidopsis thaliana unknown protein (At2g36930) ... 44 0.18
8gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map ... 44 0.18
9gb|AC012454.8| Homo sapiens BAC clone RP11-439L14 from 2, comple... 42 0.70
10gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 2.8
11gb|AC101663.10| Mus musculus chromosome 1, clone RP23-37L1, comp... 40 2.8
12emb|AL365394.26| Human DNA sequence from clone RP11-275D4 on chr... 40 2.8
13emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 i... 40 2.8
14gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 40 2.8
15emb|BX322796.12| Zebrafish DNA sequence from clone DKEY-210F16 i... 40 2.8
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
17gb|AC104981.9| Homo sapiens chromosome 17, clone RP11-316M20, co... 40 2.8
18dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
19dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
20gb|AC144773.3| Mus musculus BAC clone RP24-176P22 from 1, comple... 40 2.8
21dbj|AK117070.1| Ciona intestinalis cDNA, clone:cits025p18, full ... 40 2.8 
>ref|XM_483821.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 468

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 172 gacatgagcttcaagccattgtccggcattcccattcca 210
           ||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 461 gacatgagcttcaggccattgtcaggcatccccattcca 423
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 172      gacatgagcttcaagccattgtccggcattcccattcca 210
                ||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 28265259 gacatgagcttcaggccattgtcaggcatccccattcca 28265297



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 133      atagcagcagcaataaaaatagca 156
                ||||||||||||| ||||||||||
Sbjct: 18513161 atagcagcagcaacaaaaatagca 18513138
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>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0705A05
          Length = 143765

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 172   gacatgagcttcaagccattgtccggcattcccattcca 210
             ||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 57074 gacatgagcttcaggccattgtcaggcatccccattcca 57112
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>gb|AC104843.3| Homo sapiens BAC clone RP11-1246H4 from 7, complete sequence
          Length = 126626

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 20    tagataaaagctggcaagcatgc 42
             |||||||||||||||||||||||
Sbjct: 64467 tagataaaagctggcaagcatgc 64445
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>ref|NM_129249.1| Arabidopsis thaliana nucleic acid binding / zinc ion binding
           AT2G36930 mRNA, complete cds
          Length = 774

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 ccattgtccggcattcccattccacc 212
           |||||||| |||||||||||||||||
Sbjct: 652 ccattgtctggcattcccattccacc 627



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 186 gccattgtccggcattcccattccaccggc 215
           ||||||||||||||| |||||||| |||||
Sbjct: 413 gccattgtccggcatccccattcccccggc 384
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>gb|AY091369.1| Arabidopsis thaliana unknown protein (At2g36930) mRNA, complete cds
          Length = 628

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 ccattgtccggcattcccattccacc 212
           |||||||| |||||||||||||||||
Sbjct: 575 ccattgtctggcattcccattccacc 550



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 186 gccattgtccggcattcccattccaccggc 215
           ||||||||||||||| |||||||| |||||
Sbjct: 336 gccattgtccggcatccccattcccccggc 307
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>gb|AY045831.1| Arabidopsis thaliana unknown protein (At2g36930) mRNA, complete cds
          Length = 791

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 187 ccattgtccggcattcccattccacc 212
           |||||||| |||||||||||||||||
Sbjct: 652 ccattgtctggcattcccattccacc 627



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 186 gccattgtccggcattcccattccaccggc 215
           ||||||||||||||| |||||||| |||||
Sbjct: 413 gccattgtccggcatccccattcccccggc 384
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>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
             sequence
          Length = 134151

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 186   gccattgtccggcattcccattccaccggc 215
             ||||||||||||||| |||||||| |||||
Sbjct: 71817 gccattgtccggcatccccattcccccggc 71846



 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 187   ccattgtccggcattcccattccacc 212
             |||||||| |||||||||||||||||
Sbjct: 71203 ccattgtctggcattcccattccacc 71228
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>gb|AC012454.8| Homo sapiens BAC clone RP11-439L14 from 2, complete sequence
          Length = 185512

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    ttacaaatcaagcaaagttgg 123
              |||||||||||||||||||||
Sbjct: 128221 ttacaaatcaagcaaagttgg 128241
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 101     agttacaaatcaagcaaagt 120
               ||||||||||||||||||||
Sbjct: 2982595 agttacaaatcaagcaaagt 2982614
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>gb|AC101663.10| Mus musculus chromosome 1, clone RP23-37L1, complete sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   tagcagcagcaataaaaata 153
             ||||||||||||||||||||
Sbjct: 55843 tagcagcagcaataaaaata 55824
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>emb|AL365394.26| Human DNA sequence from clone RP11-275D4 on chromosome 13, complete
             sequence
          Length = 89746

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   atagcagcagcaataaaaatagca 156
             |||||||||||||||| |||||||
Sbjct: 59235 atagcagcagcaataacaatagca 59212
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>emb|CR759748.6| Zebrafish DNA sequence from clone DKEYP-118G11 in linkage group 17,
              complete sequence
          Length = 165743

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     tttgcaagttacaaatcaagcaaa 118
              ||||||| ||||||||||||||||
Sbjct: 131223 tttgcaatttacaaatcaagcaaa 131200
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>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    caataaaaatagcaaacaac 162
              ||||||||||||||||||||
Sbjct: 152373 caataaaaatagcaaacaac 152354
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>emb|BX322796.12| Zebrafish DNA sequence from clone DKEY-210F16 in linkage group 17,
             complete sequence
          Length = 68234

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    tttgcaagttacaaatcaagcaaa 118
             ||||||| ||||||||||||||||
Sbjct: 10935 tttgcaatttacaaatcaagcaaa 10912
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 133      atagcagcagcaataaaaatagca 156
                ||||||||||||| ||||||||||
Sbjct: 14026254 atagcagcagcaacaaaaatagca 14026231
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>gb|AC104981.9| Homo sapiens chromosome 17, clone RP11-316M20, complete sequence
          Length = 193181

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cagcaataaaaatagcaaac 159
             ||||||||||||||||||||
Sbjct: 91675 cagcaataaaaatagcaaac 91694
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>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0031J07
          Length = 172511

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 133    atagcagcagcaataaaaatagca 156
              ||||||||||||| ||||||||||
Sbjct: 143474 atagcagcagcaacaaaaatagca 143451
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>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0671F11
          Length = 159409

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   atagcagcagcaataaaaatagca 156
             ||||||||||||| ||||||||||
Sbjct: 95184 atagcagcagcaacaaaaatagca 95161
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>gb|AC144773.3| Mus musculus BAC clone RP24-176P22 from 1, complete sequence
          Length = 167510

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tagcagcagcaataaaaata 153
              ||||||||||||||||||||
Sbjct: 146118 tagcagcagcaataaaaata 146099
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>dbj|AK117070.1| Ciona intestinalis cDNA, clone:cits025p18, full insert sequence
          Length = 2605

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 98   gcaagttacaaatcaagcaa 117
            ||||||||||||||||||||
Sbjct: 2318 gcaagttacaaatcaagcaa 2337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,063,865
Number of Sequences: 3902068
Number of extensions: 2063865
Number of successful extensions: 150140
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149920
Number of HSP's gapped (non-prelim): 220
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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