ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full ... 555 e-155
2gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full ... 535 e-149
3gb|AY107597.1| Zea mays PCO071961 mRNA sequence 242 8e-61
4ref|XM_483751.1| Oryza sativa (japonica cultivar-group), mRNA 234 2e-58
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
6dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 234 2e-58
7dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
8dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
9dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for ... 151 2e-33
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
11dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
12dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
13dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cy... 86 1e-13
14gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site fla... 68 3e-08
15gb|AY103967.1| Zea mays PCO066827 mRNA sequence 68 3e-08
16gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reduct... 56 1e-04
17ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.024
18gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 48 0.024
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
20dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
21dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
22emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 44 0.38
23dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.38
24gb|AY969674.1| Uncultured basidiomycete isolate dfmo0690_245 18S... 42 1.5
25gb|AY969639.1| Uncultured basidiomycete isolate dfmo0690_209 18S... 42 1.5
26gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequ... 42 1.5
27gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 o... 42 1.5
28dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.5
29dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.5
30gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.5
31gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.5
32dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.5
33emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chr... 42 1.5
34gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome 40 5.9
35gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 5.9
36gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 5.9
37emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on ch... 40 5.9
38emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
39emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 40 5.9
40gb|AF411809.1| Lycopersicon esculentum BAC clone FW2.2, complete... 40 5.9
41gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, comp... 40 5.9
42gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.9
43dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, U... 40 5.9
44dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, U... 40 5.9
45gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 5.9 
>gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full insert mRNA sequence
          Length = 1486

 Score =  555 bits (280), Expect = e-155
 Identities = 366/394 (92%), Gaps = 11/394 (2%)
 Strand = Plus / Minus

                                                                        
Query: 49   agtggtcacagcaacaccatcaaactccaaaaggnnnnnnngaaatcgaatcacgtttct 108
            |||||||||||||||||||||||||||||||| |        ||||||||||||  ||||
Sbjct: 1401 agtggtcacagcaacaccatcaaactccaaaatgaa------aaatcgaatcacacttct 1348

                                                                        
Query: 109  gagctagggacta--ggaagcatcggcaggggagggacaaacacaagatttacacgcgta 166
            |||||||| ||||  ||||||||||||||||||||||||||||||| ||| |||||||| 
Sbjct: 1347 gagctaggaactataggaagcatcggcaggggagggacaaacacaacattaacacgcgtc 1288

                                                                        
Query: 167  gatagataatagaggaatcttcagatctttgtggcgaaatcaaggccttccttggcgagc 226
            || |||||   |||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 1287 gacagata---gaggaatcttcagatcttggtggcgaaatcaaggccttccttgccgagc 1231

                                                                        
Query: 227  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 1171

                                                                        
Query: 287  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 346
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1170 tcggcggagccgccctctaggaacacaccgatgaccttgccgtccttgacccagtaggtg 1111

                                                                        
Query: 347  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 406
            |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 ccgaacttgggcttggccaccgctgggtcgttgtccccgaacagcaccgtctcgccaacg 1051

                                              
Query: 407  ttgtcgccgtagaactgccacgcgacgtcgaacg 440
            || ||||||||||||||||||||||| |||||||
Sbjct: 1050 ttctcgccgtagaactgccacgcgacatcgaacg 1017
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>gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA
           sequence
          Length = 933

 Score =  535 bits (270), Expect = e-149
 Identities = 309/320 (96%), Gaps = 4/320 (1%)
 Strand = Plus / Minus

                                                                       
Query: 121 aggaagcatcggcaggggagggacaaacacaagatttacacgcgtagatagataatagag 180
           ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||   |||
Sbjct: 789 aggaagcatcggcaggg-agggacaaacacaaaatttacacgcgtcgatagata---gag 734

                                                                       
Query: 181 gaatcttcagatctttgtggcgaaatcaaggccttccttggcgagcgcctccacgtcggc 240
           ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 733 gaatcttcagatcttggtggcgaaatcaaggccttccttgccgagcgcctccacgtcgtc 674

                                                                       
Query: 241 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 614

                                                                       
Query: 301 ctctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctctaggaacacaccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 554

                                                                       
Query: 361 ggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggccgccgctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 494

                               
Query: 421 ctgccacgcgacgtcgaacg 440
           ||||||||||||||||||||
Sbjct: 493 ctgccacgcgacgtcgaacg 474



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 27  aaatttattgaaatcctaccacagtggtcacagcaacaccatcaaactccaaaa 80
           |||||||||  ||| || ||| ||||||||||||||||||||||||||||||||
Sbjct: 908 aaatttattcgaattctgccatagtggtcacagcaacaccatcaaactccaaaa 855
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>gb|AY107597.1| Zea mays PCO071961 mRNA sequence
          Length = 1745

 Score =  242 bits (122), Expect = 8e-61
 Identities = 196/218 (89%), Gaps = 2/218 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  agcgcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattc 283
            |||||||  |||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct: 1478 agcgcctggacgtcggccaccggcggctgcgccctggcgaccctggcgatggcctggttc 1419

                                                                        
Query: 284  tcgtcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtag 343
            || ||||| || |||||||| || |||||||||| ||||||||||||||| |||||||||
Sbjct: 1418 tcctcggccgacccgccctcgagaaacacgccgacgaccttgccgtccttcacccagtag 1359

                                                                        
Query: 344  gtgccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtc-tcgcc 402
             |||||||||||||||||||||  || ||||||||||| |||||||||| |||| |||||
Sbjct: 1358 ctgccgaacttgggcttggccgaggccgggtcgttgtcgccgaacagca-cgtcgtcgcc 1300

                                                  
Query: 403  aacgttgtcgccgtagaactgccacgcgacgtcgaacg 440
             |||||||||||||||||||||||||| | ||||||||
Sbjct: 1299 gacgttgtcgccgtagaactgccacgccaagtcgaacg 1262
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>ref|XM_483751.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1721

 Score =  234 bits (118), Expect = 2e-58
 Identities = 190/214 (88%)
 Strand = Plus / Minus

                                                                        
Query: 227  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 286
            ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306

                                                                        
Query: 287  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 346
            || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246

                                                                        
Query: 347  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 406
            |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186

                                              
Query: 407  ttgtcgccgtagaactgccacgcgacgtcgaacg 440
            |||||||||||||||||||||| || ||||||||
Sbjct: 1185 ttgtcgccgtagaactgccacgagaggtcgaacg 1152
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  234 bits (118), Expect = 2e-58
 Identities = 190/214 (88%)
 Strand = Plus / Minus

                                                                            
Query: 227      gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 286
                ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 27895523 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 27895464

                                                                            
Query: 287      tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 346
                || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 27895463 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 27895404

                                                                            
Query: 347      ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 406
                |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 27895403 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 27895344

                                                  
Query: 407      ttgtcgccgtagaactgccacgcgacgtcgaacg 440
                |||||||||||||||||||||| || ||||||||
Sbjct: 27895343 ttgtcgccgtagaactgccacgagaggtcgaacg 27895310
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1150_A11
          Length = 142010

 Score =  234 bits (118), Expect = 2e-58
 Identities = 190/214 (88%)
 Strand = Plus / Minus

                                                                          
Query: 227    gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 286
              ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 103601 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 103542

                                                                          
Query: 287    tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 346
              || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 103541 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 103482

                                                                          
Query: 347    ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 406
              |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 103481 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 103422

                                                
Query: 407    ttgtcgccgtagaactgccacgcgacgtcgaacg 440
              |||||||||||||||||||||| || ||||||||
Sbjct: 103421 ttgtcgccgtagaactgccacgagaggtcgaacg 103388
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>dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094C01, full
            insert sequence
          Length = 1720

 Score =  234 bits (118), Expect = 2e-58
 Identities = 190/214 (88%)
 Strand = Plus / Minus

                                                                        
Query: 227  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 286
            ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306

                                                                        
Query: 287  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 346
            || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246

                                                                        
Query: 347  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 406
            |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186

                                              
Query: 407  ttgtcgccgtagaactgccacgcgacgtcgaacg 440
            |||||||||||||||||||||| || ||||||||
Sbjct: 1185 ttgtcgccgtagaactgccacgagaggtcgaacg 1152
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>dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C10, full
           insert sequence
          Length = 694

 Score =  234 bits (118), Expect = 2e-58
 Identities = 190/214 (88%)
 Strand = Plus / Minus

                                                                       
Query: 227 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 286
           ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 338 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 279

                                                                       
Query: 287 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 346
           || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 278 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 219

                                                                       
Query: 347 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 406
           |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 218 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 159

                                             
Query: 407 ttgtcgccgtagaactgccacgcgacgtcgaacg 440
           |||||||||||||||||||||| || ||||||||
Sbjct: 158 ttgtcgccgtagaactgccacgagaggtcgaacg 125
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>dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for monodehydroascorbate
            reductase, partial cds
          Length = 1339

 Score =  151 bits (76), Expect = 2e-33
 Identities = 121/136 (88%)
 Strand = Plus / Minus

                                                                        
Query: 305  aggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttggcc 364
            ||||| ||||||| ||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct: 1335 aggaagacgccgacgaccttgccgtccttgatccagtacgagccgaacttgggcttggcc 1276

                                                                        
Query: 365  gcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgc 424
            || |  ||||||||||| |||||||||||   |||||| |||||||||||||||||||||
Sbjct: 1275 gccgtggggtcgttgtcgccgaacagcacatcctcgccgacgttgtcgccgtagaactgc 1216

                            
Query: 425  cacgcgacgtcgaacg 440
            |||| || ||||||||
Sbjct: 1215 cacgagaggtcgaacg 1200
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 320      accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 379
                |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 22346963 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 22346904

                                                               
Query: 380      tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 426
                || |||||||| |  || ||||||||||||||||||||||| |||||
Sbjct: 22346903 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 22346857
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>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1155_H10
          Length = 140475

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                          
Query: 320    accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 379
              |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 108971 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 108912

                                                             
Query: 380    tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 426
              || |||||||| |  || ||||||||||||||||||||||| |||||
Sbjct: 108911 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 108865
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>dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100J06, full
            insert sequence
          Length = 1668

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 320  accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 379
            |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 1394 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1335

                                                           
Query: 380  tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 426
            || |||||||| |  || ||||||||||||||||||||||| |||||
Sbjct: 1334 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 1288
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>dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cytosolic
            monodehydroascorbate reductase, complete cds
          Length = 1570

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 320  accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 379
            |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 1272 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1213

                                                           
Query: 380  tccccgaacagcaccgtctcgccaacgttgtcgccgtagaactgcca 426
            || |||||||| |  || ||||||||||||||||||||||| |||||
Sbjct: 1212 tctccgaacaggatggtgtcgccaacgttgtcgccgtagaattgcca 1166
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>gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site flanking region
           genomic sequence
          Length = 887

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 245 ggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccctct 304
           ||||||||| |||| |||| ||||||||||||    |||||||| |  || |||||||| 
Sbjct: 654 ggcggctggtccctcgcgagcttggcgatggcgccgttctcgtccggcgacccgccctcc 595

                                                 
Query: 305 aggaacacgccgatgaccttgccgtccttgacccagta 342
           ||||||||||| | |  |||||||||||||||||||||
Sbjct: 594 aggaacacgcccacgcacttgccgtccttgacccagta 557
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>gb|AY103967.1| Zea mays PCO066827 mRNA sequence
          Length = 1675

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 159/198 (80%), Gaps = 2/198 (1%)
 Strand = Plus / Minus

                                                                        
Query: 242  accggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccc 301
            |||||||||||||   | || |||||||| ||| |||  |||||||| |  || ||||||
Sbjct: 1386 accggcggctgggttttcgccaccttggcaatgaccttgttctcgtccggtgacccgccc 1327

                                                                        
Query: 302  tctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttg 361
            || |||||  |||| | ||||||||||||||| | |||||| | ||||||||||||||| 
Sbjct: 1326 tccaggaaggcgcccaagaccttgccgtccttaatccagtacgagccgaacttgggctt- 1268

                                                                        
Query: 362  gccgcagct-gggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccgtagaa 420
            || | || | |||||  |||| || ||||| |  || ||||| |||||||||||||||||
Sbjct: 1267 gctggaggtggggtcactgtcgccaaacaggatggtttcgcccacgttgtcgccgtagaa 1208

                              
Query: 421  ctgccacgcgacgtcgaa 438
             |||||||| | ||||||
Sbjct: 1207 ttgccacgccaggtcgaa 1190
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>gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene,
            promoter region and complete cds
          Length = 6026

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 389  agcaccgtctcgccaacgttgtcgccgtagaactgccacg 428
            ||||| |||||||| || ||||||||||||||||||||||
Sbjct: 5562 agcacagtctcgcccacattgtcgccgtagaactgccacg 5523
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>ref|XM_467387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 405  cgttgtcgccgtagaactgccacg 428
            ||||||||||||||||||||||||
Sbjct: 1084 cgttgtcgccgtagaactgccacg 1061
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>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 405    cgttgtcgccgtagaactgccacg 428
              ||||||||||||||||||||||||
Sbjct: 116968 cgttgtcgccgtagaactgccacg 116945
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 405      cgttgtcgccgtagaactgccacg 428
                ||||||||||||||||||||||||
Sbjct: 29245663 cgttgtcgccgtagaactgccacg 29245686
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>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 405   cgttgtcgccgtagaactgccacg 428
             ||||||||||||||||||||||||
Sbjct: 43008 cgttgtcgccgtagaactgccacg 43031
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>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 405    cgttgtcgccgtagaactgccacg 428
              ||||||||||||||||||||||||
Sbjct: 135631 cgttgtcgccgtagaactgccacg 135654
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 216    ccttggcgagcgcctccacgtcggcc 241
              ||||||||| ||||||||||||||||
Sbjct: 292100 ccttggcgaccgcctccacgtcggcc 292075
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 310     cacgccgatgaccttgccgtccttga 335
               ||||||| ||||||||||||||||||
Sbjct: 2805150 cacgccggtgaccttgccgtccttga 2805125



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 318     tgaccttgccgtccttgacc 337
               ||||||||||||||||||||
Sbjct: 4337179 tgaccttgccgtccttgacc 4337198
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>gb|AY969674.1| Uncultured basidiomycete isolate dfmo0690_245 18S ribosomal RNA
           gene, partial sequence; internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence; and 28S ribosomal RNA gene,
           partial sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 57  cagcaacaccatcaaactccaaaag 81
           |||||||||| ||||||||||||||
Sbjct: 419 cagcaacaccctcaaactccaaaag 395
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>gb|AY969639.1| Uncultured basidiomycete isolate dfmo0690_209 18S ribosomal RNA
           gene, partial sequence; internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence; and 28S ribosomal RNA gene,
           partial sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 57  cagcaacaccatcaaactccaaaag 81
           |||||||||| ||||||||||||||
Sbjct: 419 cagcaacaccctcaaactccaaaag 395
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>gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequence
          Length = 537

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 133 caggggagggacaaacacaag 153
           |||||||||||||||||||||
Sbjct: 194 caggggagggacaaacacaag 214
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>gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 of the complete
            genome
          Length = 11021

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 237  cggccaccggcggctgggccctggcgacc 265
            |||||||||||||||||||| || |||||
Sbjct: 9935 cggccaccggcggctgggccatgccgacc 9963
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 250    ctgggccctggcgaccttggcgatggcct 278
              ||||||| |||| ||||||||||||||||
Sbjct: 792531 ctgggccttggccaccttggcgatggcct 792559
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 313     gccgatgaccttgccgtcctt 333
               |||||||||||||||||||||
Sbjct: 2512009 gccgatgaccttgccgtcctt 2512029
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    acccagtaggtgccgaacttg 355
              |||||||||||||||||||||
Sbjct: 464124 acccagtaggtgccgaacttg 464144
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 250    ctgggccctggcgaccttggcgatggcct 278
              ||||||| |||| ||||||||||||||||
Sbjct: 463611 ctgggccttggccaccttggcgatggcct 463639
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 310    cacgccgatgaccttgccgtc 330
              |||||||||||||||||||||
Sbjct: 532004 cacgccgatgaccttgccgtc 532024
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>emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chromosome 2, complete
              sequence
          Length = 140953

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    ggcaggggagggacaaacaca 151
              |||||||||||||||||||||
Sbjct: 127280 ggcaggggagggacaaacaca 127260
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>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
          Length = 150715

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tccacgtcggccaccggcgg 249
              ||||||||||||||||||||
Sbjct: 134504 tccacgtcggccaccggcgg 134485
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      aacaccatcaaactccaaaa 80
               ||||||||||||||||||||
Sbjct: 2115717 aacaccatcaaactccaaaa 2115698
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 56      acagcaacaccatcaaactc 75
               ||||||||||||||||||||
Sbjct: 6210867 acagcaacaccatcaaactc 6210848
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>emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on chromosome 1 Contains a
             novel gene, the gene for  tetraspan 1 (TSPAN-1), gene
             FLJ20277 (FLJ31624) and the gene for a novel protein
             (FLJ25163), complete sequence
          Length = 87234

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   ctgggccctggcgaccttgg 269
             ||||||||||||||||||||
Sbjct: 22909 ctgggccctggcgaccttgg 22928
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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    caccggcggctgggccctgg 260
              ||||||||||||||||||||
Sbjct: 268675 caccggcggctgggccctgg 268694
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    caccggcggctgggccctgg 260
              ||||||||||||||||||||
Sbjct: 340349 caccggcggctgggccctgg 340368
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>gb|AF411809.1| Lycopersicon esculentum BAC clone FW2.2, complete sequence
          Length = 127892

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   caaaaggccctaaatttattgaaa 39
            |||| |||||||||||||||||||
Sbjct: 3622 caaacggccctaaatttattgaaa 3599
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>gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, complete sequence
          Length = 96963

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gctgggccctggcgaccttg 268
             ||||||||||||||||||||
Sbjct: 84619 gctgggccctggcgaccttg 84600
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 318     tgaccttgccgtccttgacc 337
               ||||||||||||||||||||
Sbjct: 3687086 tgaccttgccgtccttgacc 3687067
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>dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds, genotypes: BVlt
          Length = 7985

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 220  ggcgagcgcctccacgtcggccac 243
            ||||||||||||||||| ||||||
Sbjct: 4291 ggcgagcgcctccacgtgggccac 4268
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>dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds, genotypes: BVpt
          Length = 7910

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 220  ggcgagcgcctccacgtcggccac 243
            ||||||||||||||||| ||||||
Sbjct: 4299 ggcgagcgcctccacgtgggccac 4276
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    cgatgaccttgccgtccttg 334
              ||||||||||||||||||||
Sbjct: 420412 cgatgaccttgccgtccttg 420431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,836,081
Number of Sequences: 3902068
Number of extensions: 2836081
Number of successful extensions: 62698
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62009
Number of HSP's gapped (non-prelim): 679
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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