ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interfe... 31 1.4
2GTFD_STRMU (P49331) Glucosyltransferase-S precursor (EC 2.4.1.5)... 29 5.4

>AGO1_SCHPO (O74957) Cell cycle control protein ago1 (RNA interference pathway|
           protein ago1)
          Length = 834

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 397 GGGSKAWRGVYQPNDDKLQFFYDGQGFMSLQLNKDQADFIFYDVSGKVLYEWT 239
           GGG +AW+G YQ            QGFMS+ ++   + F   D   ++L E+T
Sbjct: 174 GGGVEAWKGFYQS-------IRPNQGFMSVNVDISSSAFWRNDSLLQILMEYT 219



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>GTFD_STRMU (P49331) Glucosyltransferase-S precursor (EC 2.4.1.5) (GTF-S)|
            (Dextransucrase) (Sucrose 6-glucosyltransferase)
          Length = 1462

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 21/92 (22%)
 Frame = -2

Query: 472  FYINGHDHCLEHISSRNSPIQYFTSGG---------------------GSKAWRGVYQPN 356
            +Y + + H +  +   N  +QYF S G                     G++   G Y  +
Sbjct: 1128 YYFDNNGHMVYGLQHLNGEVQYFLSNGVQLRESFLENADGSKNYFGHLGNRYSNGYYSFD 1187

Query: 355  DDKLQFFYDGQGFMSLQLNKDQADFIFYDVSG 260
            +D    ++D  G M++ L     +  ++D  G
Sbjct: 1188 NDSKWRYFDASGVMAVGLKTINGNTQYFDQDG 1219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,727,502
Number of Sequences: 219361
Number of extensions: 1398148
Number of successful extensions: 3011
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3008
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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