ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39d08 |
|---|---|
| Clone Library Name | barley_pub |
>PSD7_ARATH (O24412) Probable 26S proteasome non-ATPase regulatory subunit 7| (26S proteasome regulatory subunit rpn8) (MOV34 protein) Length = 308 Score = 198 bits (503), Expect = 1e-50 Identities = 99/111 (89%), Positives = 105/111 (94%) Frame = -3 Query: 563 EVSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAF 384 EV++KL ALKGLDARL EIR YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNEL+KAF Sbjct: 198 EVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAF 257 Query: 383 AVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSKPAAIPTAA 231 +VKTNDMMLVIYLSSLIRSVIALHNLINNK+LNKEHEKAEDSKP AIP + Sbjct: 258 SVKTNDMMLVIYLSSLIRSVIALHNLINNKLLNKEHEKAEDSKPVAIPATS 308
>PSD7_HUMAN (P51665) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein homolog) Length = 324 Score = 129 bits (324), Expect = 6e-30 Identities = 58/99 (58%), Positives = 84/99 (84%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFA 381 +++++ LKGL+++L +IR YL+ V GKLP+NH+I+Y LQDVFNLLP++++ E +KAF Sbjct: 191 ITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFY 250 Query: 380 VKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE 264 +KTND M+V+YL+SLIRSV+ALHNLINNK+ N++ EK E Sbjct: 251 LKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>PSD7_MOUSE (P26516) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein) Length = 321 Score = 129 bits (323), Expect = 7e-30 Identities = 58/99 (58%), Positives = 83/99 (83%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFA 381 +++++ LKGL+++L +IR YL+ V GKLP+NH+I+Y LQDVFNLLP+ ++ E +KAF Sbjct: 191 ITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDASLQEFVKAFY 250 Query: 380 VKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE 264 +KTND M+V+YL+SLIRSV+ALHNLINNK+ N++ EK E Sbjct: 251 LKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKE 289
>PSD7_DROME (P26270) 26S proteasome non-ATPase regulatory subunit 7 (26S| proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Proteasome subunit p39B) (Protein Mov34) Length = 337 Score = 116 bits (290), Expect = 5e-26 Identities = 54/106 (50%), Positives = 83/106 (78%), Gaps = 1/106 (0%) Frame = -3 Query: 563 EVSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAF 384 +++++L LKGL+A+L +I+ YL V + K+P+NH+I+Y LQD+FNLLP++ ++ Sbjct: 192 KITNQLMGLKGLNAQLRDIKQYLQRVGDSKMPINHQIVYQLQDIFNLLPDITNDQFTGTM 251 Query: 383 AVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE-DSKPA 249 VKTND MLV+YL+S++RS+IALHNLINNK+ N++ E+ + DSK A Sbjct: 252 YVKTNDQMLVVYLASMVRSIIALHNLINNKLANRDAEEGKSDSKEA 297
>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8| Length = 352 Score = 103 bits (257), Expect = 3e-22 Identities = 51/115 (44%), Positives = 80/115 (69%), Gaps = 13/115 (11%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNV-------- 405 +++++ +L+GL RL +I+ YL V++G+LP+NH IL +LQDVFNLLPNL+ Sbjct: 199 ITNQMRSLQGLHHRLRDIQAYLQKVLDGQLPVNHAILGNLQDVFNLLPNLSTPKSGPGAT 258 Query: 404 -----NELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSK 255 +EL A ++KTND ++ IYLSSLIR++ A H+LI NK+ N++ ++ D+K Sbjct: 259 GTNADSELNHAMSIKTNDQLMAIYLSSLIRAITAFHDLIENKIQNRQQQEENDAK 313
>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8| Length = 337 Score = 95.5 bits (236), Expect = 9e-20 Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 17/111 (15%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNV-------- 405 ++++L +LKGL ++L ++ YLD VI +LP+NH IL LQDVFNLLPNL Sbjct: 189 LTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEIDV 248 Query: 404 ---------NELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKE 279 N L KA VKTND ++VIY+S+L+RS+IA +LI NK+ NK+ Sbjct: 249 ENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENKIQNKK 299
>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8| Length = 326 Score = 94.4 bits (233), Expect = 2e-19 Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 18/121 (14%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNL---------- 411 ++++L +L+GL +L +I YLD V G+LP NH IL LQDVFNLLPNL Sbjct: 190 LTNQLKSLQGLQRKLRDIVAYLDKVNSGQLPANHIILGKLQDVFNLLPNLGSPDEEAPAT 249 Query: 410 -------NVNELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAE-DSK 255 + N L KA VKTND ++VIY+S+L+R++IA NLI NK+ NK+ ++A+ D + Sbjct: 250 KKDDVLASSNTLQKALTVKTNDELMVIYISNLMRAIIAFDNLIENKIKNKKLQEAKRDPE 309 Query: 254 P 252 P Sbjct: 310 P 310
>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8| Length = 329 Score = 93.2 bits (230), Expect = 5e-19 Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 17/119 (14%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNE------ 399 ++++L +LKGL +L +I YL+ VI +LP+NH IL LQDVFNLLPNL NE Sbjct: 190 LTNQLKSLKGLQKKLNDIVIYLNKVINNELPVNHTILGKLQDVFNLLPNLGYNEETDVSA 249 Query: 398 -----------LIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSK 255 L +A VKTND ++VIY+++L+R++IA +LI NKM NK+ ++ + + Sbjct: 250 TSNDMVTASNNLQRALTVKTNDELMVIYITNLVRAIIAFDDLIENKMQNKKLQEERNKE 308
>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8| Length = 324 Score = 90.9 bits (224), Expect = 2e-18 Identities = 49/113 (43%), Positives = 75/113 (66%), Gaps = 10/113 (8%) Frame = -3 Query: 560 VSSKLAALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELI---- 393 V+ + +L+GL RLTEI YL V++G+LP+NH IL LQ VFNLLPN+ ++ Sbjct: 198 VTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQA 257 Query: 392 ------KAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSKP 252 +AF V +ND ++ IY+SS++R+VIALH+L+++ +K E+ +D KP Sbjct: 258 LESEAQRAFNVNSNDQLMSIYISSIVRAVIALHDLLDSLAASKAMEQ-QDIKP 309
>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (Dch6) Length = 341 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/82 (30%), Positives = 43/82 (52%) Frame = -3 Query: 545 AALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTND 366 +A+K L+ R+ + Y+ V GKL N EIL + + LP + V + F + ND Sbjct: 240 SAIKMLNTRIKIVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYTQCND 299 Query: 365 MMLVIYLSSLIRSVIALHNLIN 300 + L+ YL +L + +H+ +N Sbjct: 300 VGLISYLGTLTKGCNDMHHFVN 321
>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) (Vpr-interacting protein) (hVIP) (MOV34 homolog) Length = 327 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/82 (28%), Positives = 45/82 (54%) Frame = -3 Query: 545 AALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTND 366 +A+K L +R+ I Y+ G++P NHEIL + + LP L+ ++ F + ND Sbjct: 226 SAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCND 285 Query: 365 MMLVIYLSSLIRSVIALHNLIN 300 + L+ YL ++ ++ ++ +N Sbjct: 286 VGLMAYLGTITKTCNTMNQFVN 307
>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| Length = 318 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/82 (28%), Positives = 45/82 (54%) Frame = -3 Query: 545 AALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTND 366 +A+K L +R+ I Y+ G++P NHEIL + + LP L+ ++ F + ND Sbjct: 217 SAIKMLHSRVRLILEYVRAAEGGEVPFNHEILREASALCHCLPVLSTDKFKTDFYDQCND 276 Query: 365 MMLVIYLSSLIRSVIALHNLIN 300 + L+ YL ++ ++ ++ +N Sbjct: 277 VGLMSYLGTITKTCNTMNQFVN 298
>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)| (SGN6) (JAB1-containing signalosome subunit 6) Length = 324 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/82 (28%), Positives = 45/82 (54%) Frame = -3 Query: 545 AALKGLDARLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTND 366 +A+K L +R+ I Y+ G++P NHEIL + + LP L+ ++ F + ND Sbjct: 223 SAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCND 282 Query: 365 MMLVIYLSSLIRSVIALHNLIN 300 + L+ YL ++ ++ ++ +N Sbjct: 283 VGLMAYLGTITKTCNTMNQFVN 304
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 39.7 bits (91), Expect = 0.006 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Frame = -3 Query: 560 VSSKLAALKGLDAR----LTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELI 393 +SS L + G AR L+ + Y + V+ GK+ ++ + L + N +P + ++ Sbjct: 269 LSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFE 328 Query: 392 KAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLN 285 ND+++V YL++L +S IAL N K++N Sbjct: 329 TMLNSNINDLLMVTYLANLTQSQIAL----NEKLVN 360
>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 357 Score = 39.7 bits (91), Expect = 0.006 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Frame = -3 Query: 560 VSSKLAALKGLDAR----LTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELI 393 +SS L + G AR L+ + Y + V+ GK+ ++ + L + N +P + ++ Sbjct: 265 LSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFE 324 Query: 392 KAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLN 285 ND+++V YL++L +S IAL N K++N Sbjct: 325 TMLNSNINDLLMVTYLANLTQSQIAL----NEKLVN 356
>HISZ_LEPIN (Q8F737) ATP phosphoribosyltransferase regulatory subunit| Length = 344 Score = 34.3 bits (77), Expect = 0.25 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Frame = -3 Query: 563 EVSSKLAALKGLDARLTEIRGYLDL----VIEGKLPLNHEILYHLQDVFNLLPNLNVNEL 396 E ++ +L L+ +LT + G ++L V E +L N ++ + LL NVNE+ Sbjct: 149 EELDEIISLLPLENKLTLVLGNVNLFQSIVQEFELKQNE-----IEILSKLLYQKNVNEI 203 Query: 395 IKAFAVKTNDMMLVIYLSSLIRS--VIALHNLINNKMLNKEHEKAEDS 258 K F K N L+ LSSL+ + + +L N +N L+K +K+ S Sbjct: 204 QKIFGEKKNHTDLIRLLSSLVLNFDLNSLKNSLNINSLSKNLQKSLSS 251
>HISZ_LEPIC (P62359) ATP phosphoribosyltransferase regulatory subunit| Length = 344 Score = 34.3 bits (77), Expect = 0.25 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Frame = -3 Query: 563 EVSSKLAALKGLDARLTEIRGYLDL----VIEGKLPLNHEILYHLQDVFNLLPNLNVNEL 396 E ++ +L L+ +LT + G ++L V E +L N ++ + LL NVNE+ Sbjct: 149 EELDEIISLLPLENKLTLVLGNVNLFQSIVQEFELKQNE-----IEILSKLLYQKNVNEI 203 Query: 395 IKAFAVKTNDMMLVIYLSSLIRS--VIALHNLINNKMLNKEHEKAEDS 258 K F K N L+ LSSL+ + + +L N +N L+K +K+ S Sbjct: 204 QKIFGEKKNHTDLIRLLSSLVLNFDLNSLKNSLNINSLSKNLQKSLSS 251
>ATC1_YEAST (P13586) Calcium-transporting ATPase 1 (EC 3.6.3.8) (Golgi| Ca(2+)-ATPase) Length = 950 Score = 33.9 bits (76), Expect = 0.33 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Frame = -3 Query: 551 KLAALKGLDARLTEIR--GYLDLVIE---GKLPLNHEILYHLQDVFNLLPNLNVNELIKA 387 ++A K + RL + G ++++ G L NH + L + ++ LNV L K Sbjct: 345 RMAKRKAIVRRLPSVETLGSVNVICSDKTGTLTSNHMTVSKLWCLDSMSNKLNVLSLDKN 404 Query: 386 FAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEH 276 K ++ L YL+ +R + + NL NN ++EH Sbjct: 405 KKTKNSNGNLKNYLTEDVRETLTIGNLCNNASFSQEH 441
>AMDM_YEAST (P15274) AMP deaminase (EC 3.5.4.6) (Myoadenylate deaminase)| Length = 810 Score = 30.4 bits (67), Expect = 3.6 Identities = 25/82 (30%), Positives = 40/82 (48%) Frame = -3 Query: 521 RLTEIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLS 342 R + GY DL I+ H+ +H D FNL N ++ +KTN+ + YL+ Sbjct: 405 RSLHLTGY-DLSIDTLDMHAHKDTFHRFDKFNLKYNPIGESRLREIFLKTNNYIKGTYLA 463 Query: 341 SLIRSVIALHNLINNKMLNKEH 276 + + VI +L N+K N E+ Sbjct: 464 DITKQVI--FDLENSKYQNCEY 483
>RPOB_BLOFL (Q7VRP7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1342 Score = 30.0 bits (66), Expect = 4.7 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Frame = +3 Query: 393 NELIYVEIGEQI--KHILQVVQNLVVQWELPFNY 488 N++IYVE G +I KHI ++ + +++ E+P NY Sbjct: 259 NDIIYVERGRRITSKHINKLKADNIIKVEVPLNY 292
>AKH_BUCBP (Q89AR4) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 816 Score = 29.3 bits (64), Expect = 8.0 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = -3 Query: 440 QDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKE 279 + VF++L ++N+N L + N + +V+ I V ALH I NK E Sbjct: 415 EKVFSILKHVNINTLAISKGASKNSISIVVKHDDGILGVRALHKGIFNKNCTAE 468 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,285,794 Number of Sequences: 219361 Number of extensions: 1521750 Number of successful extensions: 3677 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3581 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3671 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
