ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y3320_MYCBO (P65066) Hypothetical protein Mb3320 34 0.24
2Y3292_MYCTU (P65065) Hypothetical protein Rv3292/MT3391 34 0.24

>Y3320_MYCBO (P65066) Hypothetical protein Mb3320|
          Length = 415

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -2

Query: 440 AEMASNPLANAWYAGGDPSFPTEIADLCEXXXXXXXXXXXXGQLLT-DGRSGASYNLNGV 264
           AEMA+  LA  +Y GGDPS P    D                   T DG   A YN++ +
Sbjct: 334 AEMAAQGLA--YYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWL 391

Query: 263 GGRRFLVQWVWDPYRSY 213
            G   + + + DPY  Y
Sbjct: 392 AGA--IGRHIHDPYALY 406



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>Y3292_MYCTU (P65065) Hypothetical protein Rv3292/MT3391|
          Length = 415

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -2

Query: 440 AEMASNPLANAWYAGGDPSFPTEIADLCEXXXXXXXXXXXXGQLLT-DGRSGASYNLNGV 264
           AEMA+  LA  +Y GGDPS P    D                   T DG   A YN++ +
Sbjct: 334 AEMAAQGLA--YYRGGDPSAPIVYEDFLPASAAGIFRSNLDRDSQTGDGPDDAGYNVDWL 391

Query: 263 GGRRFLVQWVWDPYRSY 213
            G   + + + DPY  Y
Sbjct: 392 AGA--IGRHIHDPYALY 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,129,626
Number of Sequences: 219361
Number of extensions: 889540
Number of successful extensions: 2823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2823
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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