ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBLBA_XENLA (Q6GQL0) E3 ubiquitin-protein ligase CBL-B-A (EC 6.3... 33 0.41
2CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.... 31 1.2
3CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3... 31 1.2

>CBLBA_XENLA (Q6GQL0) E3 ubiquitin-protein ligase CBL-B-A (EC 6.3.2.-) (Signal|
           transduction protein CBL-B-A) (SH3-binding protein
           CBL-B-A)
          Length = 918

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 223 PPDARQCKHVNHRDTSPC 276
           PPD+R C+H++H D  PC
Sbjct: 575 PPDSRTCRHLHHADNVPC 592



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>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
          Length = 982

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 223 PPDARQCKHVNHRDTSPC 276
           PPD+R C+H++H +  PC
Sbjct: 575 PPDSRTCRHLHHTENVPC 592



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>CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B-B) (SH3-binding protein
           CBL-B-B)
          Length = 764

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 223 PPDARQCKHVNHRDTSPC 276
           PPD+R C+H++H +  PC
Sbjct: 577 PPDSRTCRHLHHAENVPC 594


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,525,835
Number of Sequences: 219361
Number of extensions: 660698
Number of successful extensions: 1595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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