ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39d03 |
|---|---|
| Clone Library Name | barley_pub |
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 37.0 bits (84), Expect = 0.011 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -3 Query: 386 PSAYGFVNTGASCCE-------GPCAPNYRPPCGNHMEYWYWDQENPTEQAVK 249 P+AYGF T CC+ C + C N Y +WD +PT++A K Sbjct: 466 PAAYGFEETKKPCCKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYK 518
>ALB1E_PEA (P62930) Albumin 1 E precursor (PA1 E) (PsaA1b014) (Psa) [Contains:| Albumin 1 E chain b (PA1b E) (Leginsulin E); Albumin 1 E chain a (PA1a E)] Length = 130 Score = 31.6 bits (70), Expect = 0.47 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 365 NTGASCCEGPCAPNYRPPCGN 303 N GA+ C G C+P PPCG+ Sbjct: 23 NVGAASCNGVCSPFEMPPCGS 43
>ALB1B_PEA (P62927) Albumin 1 B precursor (PA1 B) [Contains: Albumin 1 B chain| b (PA1b B) (Leginsulin B); Albumin 1 B chain a (PA1a B)] Length = 130 Score = 31.6 bits (70), Expect = 0.47 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 365 NTGASCCEGPCAPNYRPPCGN 303 N GA+ C G C+P PPCG+ Sbjct: 23 NVGAASCNGVCSPFEMPPCGS 43
>ALB1F_PEA (P62931) Albumin 1 F precursor (PA1 F) (PsaA1b005/PsaA1b011)| [Contains: Albumin 1 F chain b (PA1b F) (Leginsulin F); Albumin 1 F chain a (PA1a F)] Length = 130 Score = 31.2 bits (69), Expect = 0.61 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 365 NTGASCCEGPCAPNYRPPCG 306 N GA+ C G C+P PPCG Sbjct: 23 NVGAASCNGVCSPFEMPPCG 42
>ALB1D_PEA (P62929) Albumin 1 D precursor (PA1 D) (PsaA1b012) [Contains:| Albumin 1 D chain b (PA1b D) (Leginsulin D); Albumin 1 D chain a (PA1a D)] Length = 130 Score = 31.2 bits (69), Expect = 0.61 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 365 NTGASCCEGPCAPNYRPPCG 306 N GA+ C G C+P PPCG Sbjct: 23 NVGAASCNGVCSPFEMPPCG 42
>ALB1A_PEA (P62926) Albumin 1 A precursor (PA1 A) [Contains: Albumin 1 A chain| b (PA1b A) (Leginsulin A); Albumin 1 A chain a (PA1a A)] Length = 130 Score = 31.2 bits (69), Expect = 0.61 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 365 NTGASCCEGPCAPNYRPPCG 306 N GA+ C G C+P PPCG Sbjct: 23 NVGAASCNGVCSPFEMPPCG 42
>ALB1C_PEA (P62928) Albumin 1 C precursor (PA1 C) (PsaA1b015) [Contains:| Albumin 1 C chain b (PA1b C) (Leginsulin C); Albumin 1 C chain a (PA1a C)] Length = 130 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 365 NTGASCCEGPCAPNYRPPCGN 303 N GA C G C+P PPCG+ Sbjct: 23 NVGAISCNGVCSPFDIPPCGS 43
>APBA3_HUMAN (O96018) Amyloid beta A4 precursor protein-binding family A member| 3 (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma) Length = 575 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 373 DLSTPGPHAAKAPVHLTTGHRVAT 302 DL P P A P+H+ TGH +A+ Sbjct: 70 DLVGPSPGGAPCPLHIATGHGLAS 93
>EGR1_POEGU (O73693) Early growth response protein 1 (EGR-1) (Zinc finger| protein ZENK) (Fragment) Length = 193 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = -1 Query: 376 TDLSTPGPHAAKAPVHLT-TGHRVATTWSIGTGIRRTRQSRPLSWP 242 T S+P P + +PVH T +ATT+ GT +T+ + S P Sbjct: 119 TAYSSPAPSSYPSPVHTTFPSPSIATTYPSGTATFQTQVATSFSSP 164
>SOCS7_MOUSE (Q8VHQ2) Suppressor of cytokine signaling 7 (SOCS-7)| Length = 579 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = -3 Query: 386 PSAYGFVNTGASCCEGPCAPNYRPP 312 P+ G G CC PC P PP Sbjct: 68 PAGPGIKTAGGGCCPCPCPPQPPPP 92
>PSAA_SYNPX (Q7U4E4) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| Length = 767 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -1 Query: 352 HAAKAPVHLTTGHRVATTWSIGTGIRRTRQSR---PLSWP 242 H A A + + GH T W IG I+ + + PL +P Sbjct: 309 HVAIAVLFIVAGHMYRTNWGIGHSIKEIHEGQKGDPLLFP 348
>PSAA_PEA (P05310) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 758 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 352 HAAKAPVHLTTGHRVATTWSIGTGIR 275 H A A + L GH T W IG GI+ Sbjct: 303 HLAIAILFLIAGHMYRTNWGIGHGIK 328
>UL87_HCMVA (P16730) Protein UL87| Length = 941 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +3 Query: 3 HNATHYNSCQTEIYMVHINESFLLGILKIENTNIDHFWLPA 125 ++A + NS I + + LG+ ++ + NIDHF+LPA Sbjct: 616 NDAVYINSLNVNIRGSYPEFLYSLGVYRL-HVNIDHFFLPA 655
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = -1 Query: 406 QMQSAQIHRHTDLSTPGPHAAKAPVHLTTGHRVATTWSIGTGIRRTRQ 263 ++ SAQ +T T GP A T+ R + G+R T+Q Sbjct: 473 RVMSAQRVANTSTQTMGPRPTTAAAAATSAVRTVPQYKYAAGVRNTQQ 520
>TLR22_CHICK (Q9DGB6) Toll-like receptor 2 type-2 precursor| Length = 781 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 48 VHINESFLLGILKIENTNIDHFWL 119 +H N+S L IL IEN +I+ F+L Sbjct: 298 IHANQSQSLRILTIENLSIEEFYL 321
>PSAA_PSINU (Q9MUJ2) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 352 HAAKAPVHLTTGHRVATTWSIGTGIR 275 H A A + L GH T WSIG I+ Sbjct: 295 HLAIAVLFLVAGHMYRTNWSIGHSIK 320
>PSAA_LOTJA (P58310) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 352 HAAKAPVHLTTGHRVATTWSIGTGIR 275 H A A + L GH T W IG GI+ Sbjct: 295 HLAIAILFLIAGHMYRTNWGIGHGIK 320
>PSAA_ARATH (P56766) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 352 HAAKAPVHLTTGHRVATTWSIGTGIR 275 H A A + L GH T W IG GI+ Sbjct: 295 HLAIAILFLIAGHMYRTNWGIGHGIK 320
>PSAA_AMBTC (Q70Y03) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 352 HAAKAPVHLTTGHRVATTWSIGTGIR 275 H A A + L GH T W IG G++ Sbjct: 295 HLAIAIIFLIAGHMYRTNWGIGHGLK 320
>COG1_YEAST (P53079) Conserved oligomeric Golgi complex component 1 (Complexed| with DOR1 protein 3) Length = 417 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -2 Query: 183 DQPKVIYVNFSACSIPNKIELVTKSDLCLCFRFLVSPIKTTHL 55 D+ + + S +P+K E + K C +FLV +KT +L Sbjct: 136 DELLLNFHELSLIPVPSKFEALVKDKCCRLQKFLVDSMKTLNL 178
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = -1 Query: 367 STPGPHAAKAPVHLTTGHRVATTWSIGTGIRRTRQSRPLSWPQLH 233 ++P PH A P+H +V G+ + ++S+P P LH Sbjct: 724 NSPAPHFAMPPIHEDHLEKVFDPKVFTFGLGKKKESQPEMSPALH 768 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,504,498 Number of Sequences: 219361 Number of extensions: 1272281 Number of successful extensions: 3025 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2941 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3024 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
