>gb|AY110281.1| Zea mays CL27576_1 mRNA sequence
          Length = 673

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 392 ggcgtgcgtggggtggagcatgtcccagaaca 423
           ||||||||||||||| |||| |||||||||||
Sbjct: 350 ggcgtgcgtggggtgcagcaggtcccagaaca 381

>gb|AY105081.1| Zea mays PCO097316 mRNA sequence
          Length = 1518

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 356  gccgtagaagaaggcgacgacgccgcgttggatggtggcgtgcgtggggtggagcatgtc 415
            ||||||||||| |||||| || || ||||   | || || ||||| || || ||||||||
Sbjct: 1221 gccgtagaagatggcgaccaccccacgttcatttgttgcctgcgtaggatgtagcatgtc 1162

                           
Query: 416  ccagaacatgtagtc 430
            |||||||||||||||
Sbjct: 1161 ccagaacatgtagtc 1147

>gb|AC103592.2| Homo sapiens chromosome 1 clone RP11-335E14, complete sequence
          Length = 197372

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 128    ttttgaatgtacaagatgtttt 149
              ||||||||||||||||||||||
Sbjct: 143321 ttttgaatgtacaagatgtttt 143342

>gb|AC099769.2| Homo sapiens chromosome 1 clone RP5-963M5, complete sequence
          Length = 99680

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   ttttgaatgtacaagatgtttt 149
             ||||||||||||||||||||||
Sbjct: 94579 ttttgaatgtacaagatgtttt 94558

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 428    gtcatcgtggtcggcggcgggg 449
              ||||||||||||||||||||||
Sbjct: 615721 gtcatcgtggtcggcggcgggg 615700

>gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO), ArsB (arsB),
            ArsR1 (arsR1), ArsC (arsC), and ArsT (arsT) genes,
            complete cds; and unknown genes
          Length = 7568

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 428  gtcatcgtggtcggcggcggg 448
            |||||||||||||||||||||
Sbjct: 2522 gtcatcgtggtcggcggcggg 2502

>gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 79556

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 93   aaaataacacacttattatct 113
            |||||||||||||||||||||
Sbjct: 2403 aaaataacacacttattatct 2423

>emb|BX664713.6| Zebrafish DNA sequence from clone DKEY-27N8 in linkage group 8,
             complete sequence
          Length = 126218

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     caaaactgctttattacactc 25
             |||||||||||||||||||||
Sbjct: 10074 caaaactgctttattacactc 10054

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 390      gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 430
                ||||||||||| ||||| |||| ||||||||| | ||||||
Sbjct: 27177258 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 27177298

>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1725_H08
          Length = 155431

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 390   gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 430
             ||||||||||| ||||| |||| ||||||||| | ||||||
Sbjct: 73707 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 73747

>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 390   gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 430
             ||||||||||| ||||| |||| ||||||||| | ||||||
Sbjct: 27929 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 27969

>dbj|AK103585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B12, full
            insert sequence
          Length = 1312

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 390  gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 430
            ||||||||||| ||||| |||| ||||||||| | ||||||
Sbjct: 1021 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 981

>ref|NM_190284.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 468

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 gaagaaggcgacgacgccgc 381
           ||||||||||||||||||||
Sbjct: 364 gaagaaggcgacgacgccgc 383

>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence
          Length = 1429

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 392  ggcgtgcgtggggtggagcatgtcccagaaca 423
            ||||||||| ||||| |||| |||||||||||
Sbjct: 1143 ggcgtgcgtcgggtgcagcaggtcccagaaca 1112

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 59      atcgagctagttgcacgtac 78
               ||||||||||||||||||||
Sbjct: 1149975 atcgagctagttgcacgtac 1149994

>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence
          Length = 198403

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 147    tttggcagtttcaaattaaactgtcaaa 174
              ||||| ||||||||| ||||||||||||
Sbjct: 122863 tttggtagtttcaaaataaactgtcaaa 122890

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     cgagcgtggcgaagttgacg 332
               ||||||||||||||||||||
Sbjct: 1855915 cgagcgtggcgaagttgacg 1855896

>gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosome 17, complete sequence
          Length = 174143

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 147    tttggcagtttcaaattaaactgtcaaa 174
              ||||| ||||||||| ||||||||||||
Sbjct: 118465 tttggtagtttcaaaataaactgtcaaa 118438

>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains
             the CDH22 gene for cadherin-like 22, a novel gene and two
             CpG islands, complete sequence
          Length = 147815

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     aaaactgctttattacactcacat 29
             |||||||||||||| |||||||||
Sbjct: 26458 aaaactgctttattccactcacat 26435

>emb|Z83933.1|CVZ83933 Chlorobium vibrioforme 15 kb genomic DNA fragment
          Length = 14648

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 431  atcgtggtcggcggcggggc 450
            ||||||||||||||||||||
Sbjct: 2877 atcgtggtcggcggcggggc 2896

>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24
          Length = 157180

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 372    acgacgccgcgttggatggtggcg 395
              |||||||||||||||||| |||||
Sbjct: 102871 acgacgccgcgttggatgatggcg 102848

>gb|AC078857.12| Homo sapiens 3 BAC RP11-678L1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 190060

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tactgcctctgtttttgaat 135
             ||||||||||||||||||||
Sbjct: 70406 tactgcctctgtttttgaat 70425

>gb|AE005952.1| Caulobacter crescentus CB15 section 278 of 359 of the complete genome
          Length = 13994

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 428  gtcatcgtggtcggcggcgg 447
            ||||||||||||||||||||
Sbjct: 2865 gtcatcgtggtcggcggcgg 2884

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 455     cgtcgtgcccgggtggctgcacatcacc 482
               |||||||||||| ||||||| |||||||
Sbjct: 3720565 cgtcgtgcccggatggctgcgcatcacc 3720538

>gb|AC159471.6| Mus musculus 6 BAC RP24-148O24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 159386

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   tgttttggcagtttcaaatt 163
             ||||||||||||||||||||
Sbjct: 99184 tgttttggcagtttcaaatt 99203

>emb|AL954812.14| Zebrafish DNA sequence from clone DKEY-50G15, complete sequence
          Length = 192304

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 156    ttcaaattaaactgtcaaaacatc 179
              |||||| |||||||||||||||||
Sbjct: 130459 ttcaaaataaactgtcaaaacatc 130482

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 428     gtcatcgtggtcggcggcgg 447
               ||||||||||||||||||||
Sbjct: 3236759 gtcatcgtggtcggcggcgg 3236778

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 367     aggcgacgacgccgcgttggatgg 390
               |||||||||||||||| |||||||
Sbjct: 1080952 aggcgacgacgccgcgctggatgg 1080975

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 362      gaagaaggcgacgacgccgc 381
                ||||||||||||||||||||
Sbjct: 39040515 gaagaaggcgacgacgccgc 39040534

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 320     ggcgaagttgacgggctcgccgta 343
               ||||||||||||| ||||||||||
Sbjct: 8777871 ggcgaagttgacgcgctcgccgta 8777894



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 428     gtcatcgtggtcggcggcgg 447
               ||||||||||||||||||||
Sbjct: 2046376 gtcatcgtggtcggcggcgg 2046395

>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0674H09
          Length = 142955

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    gaagaaggcgacgacgccgc 381
              ||||||||||||||||||||
Sbjct: 114148 gaagaaggcgacgacgccgc 114167

>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506A10
          Length = 145265

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   gaagaaggcgacgacgccgc 381
             ||||||||||||||||||||
Sbjct: 58495 gaagaaggcgacgacgccgc 58514

>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence
          Length = 129164

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   ctgtttttgaatgtacaaga 143
             ||||||||||||||||||||
Sbjct: 20615 ctgtttttgaatgtacaaga 20596

>gb|AE005053.1| Halobacterium sp. NRC-1 section 84 of 170 of the complete genome
          Length = 11842

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 428  gtcatcgtggtcggcggcgg 447
            ||||||||||||||||||||
Sbjct: 7260 gtcatcgtggtcggcggcgg 7241

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 306     cccgtgacgagcgtggcgaa 325
               ||||||||||||||||||||
Sbjct: 2248800 cccgtgacgagcgtggcgaa 2248819

>dbj|AB070941.1| Streptomyces avermitilis polyketide-1 biosynthetic gene cluster
          Length = 24045

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 320  ggcgaagttgacgggctcgccgta 343
            ||||||||||||| ||||||||||
Sbjct: 3863 ggcgaagttgacgcgctcgccgta 3886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,611,446
Number of Sequences: 3902068
Number of extensions: 3611446
Number of successful extensions: 63895
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63240
Number of HSP's gapped (non-prelim): 655
length of query: 497
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 475
effective length of database: 17,147,199,772
effective search space: 8144919891700
effective search space used: 8144919891700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)