ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39d01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1017 Score = 149 bits (75), Expect = 1e-32 Identities = 164/191 (85%), Gaps = 2/191 (1%) Strand = Plus / Minus Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 345 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 886 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 828 Query: 346 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggctg 405 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 827 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctggttg 768 Query: 406 ttcaccagcgccttgtagtaaccgttgtcgaacaggtcgggagtcaccacgtccagattc 465 | | ||||| ||||||| |||||||||| |||||| || | ||||||||| ||| Sbjct: 767 tggatgagcgcgatgtagtaggcgttgtcgaaggcgtcgggggtgatcacgtccaggttc 708 Query: 466 tgcagccggtt 476 ||||||||||| Sbjct: 707 tgcagccggtt 697 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 149 bits (75), Expect = 1e-32 Identities = 164/191 (85%), Gaps = 2/191 (1%) Strand = Plus / Plus Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 345 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 35280836 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 35280894 Query: 346 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggctg 405 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 35280895 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctggttg 35280954 Query: 406 ttcaccagcgccttgtagtaaccgttgtcgaacaggtcgggagtcaccacgtccagattc 465 | | ||||| ||||||| |||||||||| |||||| || | ||||||||| ||| Sbjct: 35280955 tggatgagcgcgatgtagtaggcgttgtcgaaggcgtcgggggtgatcacgtccaggttc 35281014 Query: 466 tgcagccggtt 476 ||||||||||| Sbjct: 35281015 tgcagccggtt 35281025 Score = 125 bits (63), Expect = 2e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284 |||||||||||| |||||||| |||||||| |||||||||| ||| | || |||||| Sbjct: 35250654 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 35250713 Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 344 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 35250714 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 35250773 Query: 345 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 403 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 35250774 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 35250832 Score = 111 bits (56), Expect = 2e-21 Identities = 109/124 (87%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||| Sbjct: 35258114 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaact 35258172 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||| | Sbjct: 35258173 gcctgacgattggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccc 35258232 Query: 398 cctg 401 |||| Sbjct: 35258233 cctg 35258236 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 35242602 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 35242661 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 35242662 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 35242704 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315 |||| ||||||| ||||||||||||||||||||| Sbjct: 20964324 cttgaccatggacttggcgaactgcgcgaagaag 20964291 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 35258263 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 35258311 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 35280772 ctgaagcagctgcggcggatctcgccgacgtt 35280803 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 35258058 ctgaagcagctgcggcggatctcgccgacgtt 35258089
>dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full insert sequence Length = 1240 Score = 149 bits (75), Expect = 1e-32 Identities = 164/191 (85%), Gaps = 2/191 (1%) Strand = Plus / Minus Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 345 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 952 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 894 Query: 346 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggctg 405 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 893 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctggttg 834 Query: 406 ttcaccagcgccttgtagtaaccgttgtcgaacaggtcgggagtcaccacgtccagattc 465 | | ||||| ||||||| |||||||||| |||||| || | ||||||||| ||| Sbjct: 833 tggatgagcgcgatgtagtaggcgttgtcgaaggcgtcgggggtgatcacgtccaggttc 774 Query: 466 tgcagccggtt 476 ||||||||||| Sbjct: 773 tgcagccggtt 763 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 1016 ctgaagcagctgcggcggatctcgccgacgtt 985
>tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx64 gene for class III peroxidase 64 precursor, exons 1-2 Length = 1091 Score = 149 bits (75), Expect = 1e-32 Identities = 164/191 (85%), Gaps = 2/191 (1%) Strand = Plus / Minus Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 345 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 960 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 902 Query: 346 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggctg 405 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 901 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctggttg 842 Query: 406 ttcaccagcgccttgtagtaaccgttgtcgaacaggtcgggagtcaccacgtccagattc 465 | | ||||| ||||||| |||||||||| |||||| || | ||||||||| ||| Sbjct: 841 tggatgagcgcgatgtagtaggcgttgtcgaaggcgtcgggggtgatcacgtccaggttc 782 Query: 466 tgcagccggtt 476 ||||||||||| Sbjct: 781 tgcagccggtt 771 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 1024 ctgaagcagctgcggcggatctcgccgacgtt 993
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 149 bits (75), Expect = 1e-32 Identities = 164/191 (85%), Gaps = 2/191 (1%) Strand = Plus / Plus Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 345 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 76681 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 76739 Query: 346 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggctg 405 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 76740 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctggttg 76799 Query: 406 ttcaccagcgccttgtagtaaccgttgtcgaacaggtcgggagtcaccacgtccagattc 465 | | ||||| ||||||| |||||||||| |||||| || | ||||||||| ||| Sbjct: 76800 tggatgagcgcgatgtagtaggcgttgtcgaaggcgtcgggggtgatcacgtccaggttc 76859 Query: 466 tgcagccggtt 476 ||||||||||| Sbjct: 76860 tgcagccggtt 76870 Score = 125 bits (63), Expect = 2e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284 |||||||||||| |||||||| |||||||| |||||||||| ||| | || |||||| Sbjct: 46499 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 46558 Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 344 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 46559 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 46618 Query: 345 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 403 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 46619 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 46677 Score = 111 bits (56), Expect = 2e-21 Identities = 109/124 (87%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||| Sbjct: 53959 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaact 54017 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||| | Sbjct: 54018 gcctgacgattggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccc 54077 Query: 398 cctg 401 |||| Sbjct: 54078 cctg 54081 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 38447 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 38506 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 38507 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 38549 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 54108 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 54156 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 76617 ctgaagcagctgcggcggatctcgccgacgtt 76648 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 53903 ctgaagcagctgcggcggatctcgccgacgtt 53934
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 141 bits (71), Expect = 3e-30 Identities = 163/191 (85%), Gaps = 2/191 (1%) Strand = Plus / Minus Query: 287 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 345 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 72398 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 72340 Query: 346 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggctg 405 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 72339 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctggttg 72280 Query: 406 ttcaccagcgccttgtagtaaccgttgtcgaacaggtcgggagtcaccacgtccagattc 465 | ||||| ||||||| |||||||||| |||||| || | ||||||||| ||| Sbjct: 72279 tgggtgagcgcgatgtagtaggcgttgtcgaaggcgtcgggggtgatcacgtccaggttc 72220 Query: 466 tgcagccggtt 476 ||||||||||| Sbjct: 72219 tgcagccggtt 72209 Score = 127 bits (64), Expect = 4e-26 Identities = 111/124 (89%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| ||||||||||||| |||||| ||| ||||| | |||| |||||| Sbjct: 75713 gagcttgaccatggacttggcgaactgcgtgaagaatgcggccttg-tccgcggcgaact 75655 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 75654 gcctgacgattggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaacaccc 75595 Query: 398 cctg 401 |||| Sbjct: 75594 cctg 75591 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 82498 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 82439 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 82438 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 82396 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 75564 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 75516 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 75769 ctgaagcagctgcggcggatctcgccgacgtt 75738 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 72462 ctgaagcagctgcggcggatctcgccgacgtt 72431
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 127 bits (64), Expect = 4e-26 Identities = 111/124 (89%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| ||||||||||||| |||||| ||| ||||| | |||| |||||| Sbjct: 81334 gagcttgaccatggacttggcgaactgcgtgaagaatgcggccttg-tccgcggcgaact 81392 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct: 81393 gcctgacgattggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaacaccc 81452 Query: 398 cctg 401 |||| Sbjct: 81453 cctg 81456 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 74549 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 74608 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 74609 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 74651 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 81483 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 81531 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 81278 ctgaagcagctgcggcggatctcgccgacgtt 81309
>ref|XM_474449.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1059 Score = 125 bits (63), Expect = 2e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284 |||||||||||| |||||||| |||||||| |||||||||| ||| | || |||||| Sbjct: 969 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 910 Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 344 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 909 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 850 Query: 345 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 403 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 849 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 791
>dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D03, full insert sequence Length = 1385 Score = 125 bits (63), Expect = 2e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284 |||||||||||| |||||||| |||||||| |||||||||| ||| | || |||||| Sbjct: 1100 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 1041 Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 344 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 1040 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 981 Query: 345 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 403 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 980 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 922
>tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx62 gene for class III peroxidase 62 precursor, exons 1-2 Length = 1186 Score = 125 bits (63), Expect = 2e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 225 gaagcagctgcgacggatctcaccgacgttgccgccgggccggggcgcggtggcgagctt 284 |||||||||||| |||||||| |||||||| |||||||||| ||| | || |||||| Sbjct: 1096 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 1037 Query: 285 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 344 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 1036 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 977 Query: 345 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 403 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 976 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 918
>ref|XM_474450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 111 bits (56), Expect = 2e-21 Identities = 109/124 (87%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||| Sbjct: 894 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaact 836 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||| | Sbjct: 835 gcctgacgattggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccc 776 Query: 398 cctg 401 |||| Sbjct: 775 cctg 772 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 745 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 697 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919
>tpe|BN000592.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx63 gene for class III peroxidase 63 precursor, exons 1-2 Length = 1098 Score = 111 bits (56), Expect = 2e-21 Identities = 109/124 (87%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||| Sbjct: 984 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaact 926 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||| | Sbjct: 925 gcctgacgattggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccc 866 Query: 398 cctg 401 |||| Sbjct: 865 cctg 862 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 835 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 787 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 1040 ctgaagcagctgcggcggatctcgccgacgtt 1009
>dbj|AK070680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060N16, full insert sequence Length = 2256 Score = 103 bits (52), Expect = 6e-19 Identities = 108/124 (87%), Gaps = 2/124 (1%) Strand = Plus / Minus Query: 279 gagcttggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaact 337 ||||||| ||||||| |||||||||||| |||||| ||| ||||| | |||| ||| || Sbjct: 919 gagcttgaccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgagct 861 Query: 338 gcctcacgatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgc 397 |||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||| | Sbjct: 860 gcctgacgattggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccc 801 Query: 398 cctg 401 |||| Sbjct: 800 cctg 797 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Minus Query: 428 cgttgtcgaacaggtcgggagtcaccacgtccagattctgcagccggtt 476 |||||||||| |||||| || || ||||||||||||||||||||||| Sbjct: 770 cgttgtcgaaggcgtcgggcgtgacgacgtccagattctgcagccggtt 722 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 223 ctgaagcagctgcgacggatctcaccgacgtt 254 |||||||||||||| |||||||| |||||||| Sbjct: 975 ctgaagcagctgcggcggatctcgccgacgtt 944
>ref|XM_474448.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 889 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 830 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 829 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 787
>dbj|AK104928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B06, full insert sequence Length = 1299 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 978 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 919 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 918 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 876
>dbj|AK065090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L22, full insert sequence Length = 1333 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 979 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 920 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 919 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 877
>tpe|BN000590.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx61 gene for class III peroxidase 61, exons 1-2 Length = 1178 Score = 69.9 bits (35), Expect = 8e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 299 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 358 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 1044 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 985 Query: 359 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 401 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 984 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 942
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315 |||| ||||||| ||||||||||||||||||||| Sbjct: 67556 cttgaccatggacttggcgaactgcgcgaagaag 67523
>dbj|AK108989.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F11, full insert sequence Length = 1351 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315 |||| ||||||| ||||||||||||||||||||| Sbjct: 1045 cttgaccatggacttggcgaactgcgcgaagaag 1012
>tpe|BN000583.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx54 gene for class III peroxidase 54 precursor, exon 1 Length = 1038 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315 |||| ||||||| ||||||||||||||||||||| Sbjct: 963 cttgaccatggacttggcgaactgcgcgaagaag 930
>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04, complete sequence Length = 140890 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315 |||| ||||||| ||||||||||||||||||||| Sbjct: 9730 cttgaccatggacttggcgaactgcgcgaagaag 9697
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 287 ccatggatttggcgaactgcgcgaagaa 314 |||||||||||||||||||| ||||||| Sbjct: 489 ccatggatttggcgaactgctcgaagaa 462
>gb|DQ376124.1| Eucalyptus globulus subsp. globulus peroxidase (Px1) mRNA, partial cds Length = 957 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Minus Query: 282 cttggccatggatttggcgaactgcgcgaagaag 315 |||| ||||||| |||||||||||| |||||||| Sbjct: 723 cttgaccatggacttggcgaactgctcgaagaag 690
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 ttgatgagcgccatgtcggag 387 ||||||||||||||||||||| Sbjct: 581898 ttgatgagcgccatgtcggag 581918
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 183 ggcgtcgacgacggtgtcgatggcgcgccgggc 215 |||||||| |||| |||||||||||||| |||| Sbjct: 309971 ggcgtcgatgacgttgtcgatggcgcgctgggc 310003
>ref|XM_754706.1| Ustilago maydis 521 hypothetical protein (UM03652.1) partial mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcgacgacggtgtcgatggcg 207 ||||||||||||||||||||| Sbjct: 175 tcgacgacggtgtcgatggcg 195
>gb|AE012238.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 146 of 460 of the complete genome Length = 11884 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 480 ggccgcgctgcagttggccgc 500 ||||||||||||||||||||| Sbjct: 5472 ggccgcgctgcagttggccgc 5492
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 ggccgcgctgcagttggccgc 500 ||||||||||||||||||||| Sbjct: 3427389 ggccgcgctgcagttggccgc 3427369
>gb|AE009702.1| Brucella melitensis 16M chromosome II, section 64 of 107 of the complete sequence Length = 12043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ttgatgagcgccatgtcggag 387 ||||||||||||||||||||| Sbjct: 7177 ttgatgagcgccatgtcggag 7157
>dbj|AB178018.1| Ralstonia solanacearum hpx24 gene for hypothetical protein, complete cds Length = 6913 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 cggtgtcgatggcgcgccggg 214 ||||||||||||||||||||| Sbjct: 5827 cggtgtcgatggcgcgccggg 5807
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ttgatgagcgccatgtcggag 387 ||||||||||||||||||||| Sbjct: 635178 ttgatgagcgccatgtcggag 635158
>gb|AY319946.2| Pseudomonas putida strain DSM 3601 pyridine-2,6-bis(monothiocarboxylic acid) biosynthesis gene locus, complete sequence; and flanking regions Length = 51968 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 ggggccgcgctgcagttggcc 498 ||||||||||||||||||||| Sbjct: 18129 ggggccgcgctgcagttggcc 18149
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ttgatgagcgccatgtcggag 387 ||||||||||||||||||||| Sbjct: 635166 ttgatgagcgccatgtcggag 635146
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 atgggcgccgtggtgcggtccttg 369 ||||||||| |||||||||||||| Sbjct: 1621721 atgggcgccatggtgcggtccttg 1621698
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 287 ccatggatttggcgaactgcgcgaagaaggcg 318 ||||||| |||||||||||| |||||||||| Sbjct: 925 ccatggacttggcgaactgccggaagaaggcg 894
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 cctggctgttcaccagcgcc 417 |||||||||||||||||||| Sbjct: 3599629 cctggctgttcaccagcgcc 3599648
>ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predicted mRNA Length = 2925 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 gaagcagctgcgacggatct 244 |||||||||||||||||||| Sbjct: 2788 gaagcagctgcgacggatct 2769
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tgggcgccgtggtgcggtcc 366 |||||||||||||||||||| Sbjct: 892644 tgggcgccgtggtgcggtcc 892625
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cgggccggggcgcggtggcg 279 |||||||||||||||||||| Sbjct: 75093 cgggccggggcgcggtggcg 75112
>emb|AJ538328.1|ECL538328 Enterobacter cloacae putative hemin uptake system (ehuPASTUV genes), strain Z-2376 Length = 10269 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 acggatctcaccgacgttgccgcc 260 ||||||| |||||||||||||||| Sbjct: 3380 acggatcacaccgacgttgccgcc 3403
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ggctgttcaccagcgccttg 420 |||||||||||||||||||| Sbjct: 2464047 ggctgttcaccagcgccttg 2464066
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gggccggggcgcggtggcga 280 |||||||||||||||||||| Sbjct: 258201 gggccggggcgcggtggcga 258220
>gb|AF340167.1|AF340167 Streptomyces verticillus polyketide synthase gene, partial cds Length = 6219 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gccggggcgcggtggcgagc 282 |||||||||||||||||||| Sbjct: 1278 gccggggcgcggtggcgagc 1259
>gb|AE004624.1| Pseudomonas aeruginosa PAO1, section 185 of 529 of the complete genome Length = 11533 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ggctgttcaccagcgccttg 420 |||||||||||||||||||| Sbjct: 4156 ggctgttcaccagcgccttg 4175
>gb|AE005086.1| Halobacterium sp. NRC-1 section 117 of 170 of the complete genome Length = 11548 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 tcgacgacggtgtcgatggcgcgc 210 |||||| ||||||||||||||||| Sbjct: 1338 tcgacggcggtgtcgatggcgcgc 1361
>emb|AJ438168.1|HSA438168 Halobacterium salinarum basB gene for amino acid binding protein Length = 1242 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 tcgacgacggtgtcgatggcgcgc 210 |||||| ||||||||||||||||| Sbjct: 191 tcgacggcggtgtcgatggcgcgc 168
>ref|NM_210013.1| Eremothecium gossypii AEL201Wp (AEL201W), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gggccggggcgcggtggcga 280 |||||||||||||||||||| Sbjct: 262 gggccggggcgcggtggcga 281
>gb|AY110228.1| Zea mays CL32412_1 mRNA sequence Length = 1199 Score = 40.1 bits (20), Expect = 6.9 Identities = 47/56 (83%) Strand = Plus / Plus Query: 306 cgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtggtgc 361 |||||||||| |||| | |||| ||||||||| ||||||||||||||||||| Sbjct: 310 cgcgaagaagtcgtcttggctggccgcgaactggtcgacgatgggcgccgtggtgc 365
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 tgccgccgggccggggcgcggtgg 277 ||||||||||||| |||||||||| Sbjct: 4487536 tgccgccgggccgcggcgcggtgg 4487513
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 gaagcagctgcgacggatct 244 |||||||||||||||||||| Sbjct: 2560071 gaagcagctgcgacggatct 2560052
>gb|U11701.1|HSU11701 Human LIM-homeobox domain protein (hLH-2) mRNA, complete cds Length = 1887 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gggccggggcgcggtggcga 280 |||||||||||||||||||| Sbjct: 377 gggccggggcgcggtggcga 396 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,202,754 Number of Sequences: 3902068 Number of extensions: 3202754 Number of successful extensions: 60252 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 59303 Number of HSP's gapped (non-prelim): 928 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
