ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUOG_BUCAP (Q8K9Y2) NADH-quinone oxidoreductase chain G (EC 1.6.... 31 1.0
2EFG_MYCS5 (Q4A703) Elongation factor G (EF-G) 31 1.0
3NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysin... 30 3.0
4SYI_PROMA (Q7VDV0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 3.9
5KPTA_PSE14 (Q48DQ3) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 29 5.2
6DFRA_MAIZE (P51108) Dihydroflavonol-4-reductase (EC 1.1.1.219) (... 29 5.2
7UBIG_HAEDU (Q7VKW2) 3-demethylubiquinone-9 3-methyltransferase (... 29 5.2
8KPTA_PSESM (Q87VZ5) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 28 6.7
9EI2B_AQUAE (O67879) Putative translation initiation factor eIF-2... 28 6.7
10HIPL2_ARATH (Q94F08) HIPL2 protein precursor 28 8.8
11FZO1_YEAST (P38297) Transmembrane GTPase FZO1 (EC 3.6.5.-) 28 8.8

>NUOG_BUCAP (Q8K9Y2) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 910

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 278 SNPSSLSLRFE-NLYGFSMGLPSSSHLAVTWYCGKRSPRSWRKWAR 412
           S P      F  ++ G+S    S SH+   W+ G  SP++W K+ +
Sbjct: 727 SQPKDADTMFSFSMEGYSQPNKSISHIPFAWFPGWNSPQAWNKFQK 772



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>EFG_MYCS5 (Q4A703) Elongation factor G (EF-G)|
          Length = 696

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 247 DGDVLAEKGTPVSARFSHSTEARLLVTGSRGQAHLVKEHEQNCWK 113
           DG V+     P+S  F +STE R + +G RG   +  +H + C K
Sbjct: 635 DGAVIVRAKVPLSEMFGYSTELRSMTSG-RGTYQMQFDHYEKCPK 678



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>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4|
            lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase)
            (H4-K20-HMTase) (Nuclear receptor binding SET domain
            containing protein 1) (NR-binding SET domain containing
            protein)
          Length = 2588

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 357  AKCEDDGKPMEKPYKFSNRRLRELGLEFTPLNESLYETVTCLQKK 223
            AK  D  K +EK   F NR+  ELG E    N+ L+     + KK
Sbjct: 1012 AKQSDPDKNLEKEPSFENRKGPELGSEMNTENDELHGVNQVVPKK 1056



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>SYI_PROMA (Q7VDV0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 969

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 291 ELGLEFTPLNESLYETVTCLQKKGHLSL 208
           E  +  +P+NESL  ++T LQ+ GH S+
Sbjct: 868 EASVRISPINESLQNSLTFLQENGHNSV 895



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>KPTA_PSE14 (Q48DQ3) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 188

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -1

Query: 232 AEKGTPVS------ARFSHSTEARLLVTGSRGQAHLVKEHEQNCWKKRRYG 98
           AEK  P +      +RF  S E + L+ GSR   HL ++ E      +RYG
Sbjct: 92  AEKEPPATLYHGTASRFMTSIETQGLIAGSRHHVHLTEDPETAMSVGKRYG 142



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>DFRA_MAIZE (P51108) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 357

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = -2

Query: 393 LLGDLFPQYHVTAK---CEDDGKPMEKPYKFSNRRLRELGLEF--TPLNESLYETVTCLQ 229
           +L D +P+Y V  +    +DD +P+    +FS+++L++LG  F    L +     +   Q
Sbjct: 271 MLRDRYPEYDVPQRFPGIQDDLQPV----RFSSKKLQDLGFTFRYKTLEDMFDAAIRTCQ 326

Query: 228 KKGHLSL 208
           +KG + L
Sbjct: 327 EKGLIPL 333



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>UBIG_HAEDU (Q7VKW2) 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)|
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase)
          Length = 236

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 312 FSNRRLRELGLEFTPLNESLYETVTCLQKKGHLSLPVSLIAQKRAYL 172
           +    + +L L  T  N   ++ VTC++   H+  P+S+I   +A L
Sbjct: 99  YQQTTVEDLRLNHTACNAEKFDVVTCMEMLEHVPDPLSVIQSCKALL 145



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>KPTA_PSESM (Q87VZ5) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 187

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 211 SARFSHSTEARLLVTGSRGQAHLVKEHEQNCWKKRRYG 98
           ++RF  S E + L+ GSR   HL ++ E      +RYG
Sbjct: 105 ASRFMASIETQGLIAGSRHHVHLTEDPETALSVGKRYG 142



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>EI2B_AQUAE (O67879) Putative translation initiation factor eIF-2B (eIF-2B|
           GDP-GTP exchange factor)
          Length = 456

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 348 EDDGKPMEKPYKFSNRRLRELGLEFTPLN 262
           E++ K +EK    +N+R+ E+G E  PLN
Sbjct: 235 EEEAKEIEKEDYEANKRMGEIGSEIVPLN 263



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>HIPL2_ARATH (Q94F08) HIPL2 protein precursor|
          Length = 696

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +2

Query: 230 CKHVTVSYKLSFNGVNSNPSSLSL--RFENLYGFSMGLP-SSSH 352
           C++ TV  + + NG +S+PS+  +    E    F+MGLP SSSH
Sbjct: 327 CRYQTVVSEYTANGTSSSPSTAKIGKASEVRRIFTMGLPYSSSH 370



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>FZO1_YEAST (P38297) Transmembrane GTPase FZO1 (EC 3.6.5.-)|
          Length = 855

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 405 HFLQLLGDLFPQYHVTAKCEDDG--KPMEKPYKFSN 304
           HF+   GD  P YH     ED G  KP + PY  S+
Sbjct: 405 HFVSKNGDELPHYHNENDNEDHGDRKPDDDPYSSSD 440


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,622,381
Number of Sequences: 219361
Number of extensions: 1187672
Number of successful extensions: 3478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3475
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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