ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39c09 |
|---|---|
| Clone Library Name | barley_pub |
>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12| Length = 838 Score = 32.0 bits (71), Expect = 0.43 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%) Frame = +2 Query: 41 SSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPY--------KNLFSEEGV--HSSLLW 190 +++K +P P +S+ HQD ++ L+ + KN S V SSLL+ Sbjct: 433 TTTKLCLPENESPPTSSKHQDPGQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLF 492 Query: 191 GKPHSPGSSWFGS 229 K +SWFGS Sbjct: 493 TKTQGSSTSWFGS 505
>CLFA_STAAR (Q6GIK4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 1029 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP P S TN SNK + P + SE+ ++SL+WG Sbjct: 955 SNSDSDSGSNNNVVPPN-SPKSGTN---ASNKNEAKESKEPLPDTGSEDEANTSLIWGLL 1010 Query: 200 HSPGS 214 S GS Sbjct: 1011 ASLGS 1015
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -2 Query: 264 RPHPPHAQPQVNEPNH--EDPGECGFPQRREECTPSSENKFLYGI 136 +PHPP P + + +DP E G P E TP++EN G+ Sbjct: 1206 QPHPPALCPAFDNLYYWDQDPSERGSPPNTFEGTPTAENPEYLGL 1250
>NO12B_MEDSA (Q40339) Early nodulin 12B precursor (N-12B)| Length = 113 Score = 29.6 bits (65), Expect = 2.1 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -2 Query: 255 PPHAQPQVNEPNHEDP 208 PPH +P VN+P H++P Sbjct: 54 PPHKEPPVNKPRHKEP 69
>CLFA_STAAW (Q8NXJ1) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 946 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 872 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 927 Query: 200 HSPGS 214 S GS Sbjct: 928 ASIGS 932
>CLFA_STAAM (Q932C5) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 935 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 861 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 916 Query: 200 HSPGS 214 S GS Sbjct: 917 ASLGS 921
>CLFA_STAAN (Q99VJ4) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 989 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 915 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 970 Query: 200 HSPGS 214 S GS Sbjct: 971 ASLGS 975
>NO12A_MEDSA (Q40361) Early nodulin 12A precursor (N-12A) (Early nodulin NMS-8)| Length = 93 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 255 PPHAQPQVNEPNHEDPGECGFPQR 184 PPH +P V++P H+DP PQ+ Sbjct: 44 PPHKEPPVHKPPHKDPPVNKPPQK 67
>CLFA_STAAS (Q6GB45) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 928 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 854 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 909 Query: 200 HSPGS 214 S GS Sbjct: 910 ASIGS 914
>CLFA_STAAU (Q53653) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 859 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 914 Query: 200 HSPGS 214 S GS Sbjct: 915 ASIGS 919
>CLFA_STAAC (Q5HHM8) Clumping factor A precursor (Fibrinogen-binding protein A)| (Fibrinogen receptor A) Length = 933 Score = 28.9 bits (63), Expect = 3.6 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = +2 Query: 20 SENNS*FSSSKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKP 199 S ++S S+ ++PP S N + SNK + P + SE+ ++SL+WG Sbjct: 859 SNSDSESGSNNNVVPPN----SPKNGTNASNKNEAKDSKEPLPDTGSEDEANTSLIWGLL 914 Query: 200 HSPGS 214 S GS Sbjct: 915 ASIGS 919
>NO12_MEDTR (P30365) Early nodulin 12 precursor (N-12)| Length = 103 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 255 PPHAQPQVNEPNHEDPGECGFPQR 184 PPH +P V++P H+DP PQ+ Sbjct: 54 PPHKEPPVHKPPHKDPPVNKPPQK 77
>UNG_SCHPO (O74834) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 322 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/54 (29%), Positives = 26/54 (48%) Frame = +2 Query: 47 SKYIIPPKWEPLSSTNHQDTSNKRVFLVAIIPYKNLFSEEGVHSSLLWGKPHSP 208 S+ + PPK + S ++H +V L+ PY N+ G+ S+ G P P Sbjct: 112 SQRVFPPKEDIYSWSHHTPLHKTKVILLGQDPYHNIGQAHGLCFSVRPGIPCPP 165
>DCOR_MUSPA (P27119) Ornithine decarboxylase (EC 4.1.1.17) (ODC)| Length = 461 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Frame = +2 Query: 71 WEPLSSTNHQDTSNKRVFLV----AIIPYKNLFSEEGVHSSLLWGKPHSPGSSWFGSFTW 238 W+ ++ +D SN++ F+ + N + H L K P ++ S W Sbjct: 297 WKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIW 356 Query: 239 GCACGG 256 G C G Sbjct: 357 GPTCDG 362
>DCOR_MOUSE (P00860) Ornithine decarboxylase (EC 4.1.1.17) (ODC)| Length = 461 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Frame = +2 Query: 71 WEPLSSTNHQDTSNKRVFLV----AIIPYKNLFSEEGVHSSLLWGKPHSPGSSWFGSFTW 238 W+ ++ +D SN++ F+ + N + H L K P ++ S W Sbjct: 297 WKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIW 356 Query: 239 GCACGG 256 G C G Sbjct: 357 GPTCDG 362
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = -2 Query: 264 RPHPPHA-QPQVNEPNH--EDPGECGFPQRREECTPSSENKFLYGI 136 +PHPP A P + + +DP E G P E TP++EN G+ Sbjct: 1210 QPHPPPAFSPAFDNLYYWDQDPSERGSPPSTFEGTPTAENPEYLGL 1255
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/54 (25%), Positives = 23/54 (42%) Frame = -2 Query: 261 PHPPHAQPQVNEPNHEDPGECGFPQRREECTPSSENKFLYGIMATKKTLLLDVS 100 P PP QPQ P + P PQ +++ + + + K++ L VS Sbjct: 998 PQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQMMMMLMMQQDPKSVRLPVS 1051
>PRIO_TRIVU (P51780) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 259 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%) Frame = +2 Query: 188 WGKPHSPGSSW---FGSFTWG 241 WG+PH GSSW G WG Sbjct: 78 WGQPHPGGSSWGQPHGGSNWG 98 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%) Frame = +2 Query: 188 WGKPHSPGSSWF----GSFTWGCACGG 256 WG+PH GS+W G +WG GG Sbjct: 68 WGQPHPGGSNWGQPHPGGSSWGQPHGG 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,198,808 Number of Sequences: 219361 Number of extensions: 870828 Number of successful extensions: 2676 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2574 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2675 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
