>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 46  EQDTREHREFRSRKTLVKTKNISKPDTRRTRSPVTKPRYKNNTQGPHVSPDPRS 207
           +++ +++RE R R    + +    P  RR  SP+ + R +++++ PH     RS
Sbjct: 155 DKEDKDNREKRDRSRSPRRRKSRSPSPRRRSSPIRRERKRSHSRSPHHRTKSRS 208

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 124  TRRTRSPVTKPRYKNNTQGPHVSPDPRSLRHKAPVHYSSVFTSCP 258
            + + RSP   P  +  +Q PH SP PR     +P H+ S  TS P
Sbjct: 2304 SNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSP-HHVSPQTSSP 2347

>L_SYNV (P31332) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2116

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 106  NISKPDTRRTRSPVTKPRYKNNTQGPHVSPDPRSLRHKAPVH 231
            N+    T+R    VTK     N    H+  DP S+ H AP H
Sbjct: 984  NVLNERTKRKIISVTKVMKNRNQHWEHLLEDPVSVNHDAPPH 1025

>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 26/80 (32%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
 Frame = +2

Query: 329 PPLLPPRASCIECCSRASGAASLSFP*TPQMGINPCCRIPA--------------LKLGL 466
           PP  PP +S   C S AS  +S S   TP  G   CC   A              L  G 
Sbjct: 263 PP--PPSSSASSCSSSASSCSSASAASTPS-GAPTCCATAAAAALLYGPGGAEDLLSPGA 319

Query: 467 HCVEL----AQNKSSFGPEM 514
            C       A N  +FGPE+
Sbjct: 320 PCASCSSSGANNAFAFGPEL 339

>IME4_YEAST (P41833) N6-adenosine-methyltransferase IME4 (EC 2.1.1.62)|
          Length = 600

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 30  LTNTVGTRYTGTQGVSLKKDSRKNQEHQQ 116
           + +  GT +TGT+ +  K+ S+  Q+HQQ
Sbjct: 523 MKSKTGTSHTGTKKIDKKQPSKLQQQHQQ 551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,040,768
Number of Sequences: 219361
Number of extensions: 1773886
Number of successful extensions: 5083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5081
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)