ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39c04 |
|---|---|
| Clone Library Name | barley_pub |
>MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd| Length = 72 Score = 31.6 bits (70), Expect = 1.1 Identities = 15/30 (50%), Positives = 15/30 (50%) Frame = -1 Query: 419 PWCGRCCGCPAWPRGWRSTCCGWCRARRGP 330 P CG CCG P G CCG C R GP Sbjct: 23 PCCGPCCGPCCGPCG---PCCGPCGPRCGP 49
>BSC1_YEAST (Q12140) Bypass of stop codon protein 1| Length = 328 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +2 Query: 215 TLSILTTFSLVDGEPSACSSASSFATPPLATMSSSTLSVGRAAHDTSHSTLTAS 376 T S +TT S + S+ +S +T +T SSST S + T+ S+ T+S Sbjct: 166 TTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSS 219 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/81 (23%), Positives = 32/81 (39%) Frame = +2 Query: 221 SILTTFSLVDGEPSACSSASSFATPPLATMSSSTLSVGRAAHDTSHSTLTASLVARPDXX 400 S +TT S+ + S+ +S T +T SSST S + T+ S+ T+S Sbjct: 163 SSITTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTT 222 Query: 401 XXXXXXXXXXXPCSPNASRPS 463 + ++S S Sbjct: 223 SSSTTSSSTTSSSTTSSSTTS 243
>ILV1_MAIZE (Q41768) Acetolactate synthase 1, chloroplast precursor (EC| 2.2.1.6) (Acetohydroxy-acid synthase 1) Length = 638 Score = 30.4 bits (67), Expect = 2.5 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%) Frame = -3 Query: 384 ATRLAVNVLWLVSCAARPTERVLDDMVASG----------GVAKLLALLQADGSPSTKEK 235 AT L VL LV + RP V ASG G+ L+ PS Sbjct: 253 ATELLEQVLRLVGESRRPVLYVGGGCAASGEELRRFVELTGIPVTTTLMGLGNFPSDDPL 312 Query: 234 VVRMLRVHGAFWRQYPCIPADL 169 +RML +HG + Y ADL Sbjct: 313 SLRMLGMHGTVYANYAVDKADL 334
>MUTB_PORGI (Q59677) Methylmalonyl-CoA mutase large subunit (EC 5.4.99.2)| (MCM-alpha) Length = 715 Score = 29.6 bits (65), Expect = 4.2 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = +2 Query: 65 QFSLYQTVIHPPASLYTCRSSTQILDHLRNLR*SLRSAGMQGYCLQNAPCTLSILTTFSL 244 +F + T I+PP ++ R I ++ S + GY +Q A T I ++L Sbjct: 198 EFMVRNTYIYPPE--FSMRIIADIFEYTSQNMPKFNSISISGYHMQEAGATADIEMAYTL 255 Query: 245 VDG 253 DG Sbjct: 256 ADG 258
>RAG1_RABIT (P34088) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1042 Score = 29.3 bits (64), Expect = 5.5 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = -3 Query: 234 VVRMLRVHGAFWR--QYPCIPADLKDYLKFLK*SSICVLD 121 ++R L+V G++ QYPC P DL+ +K S +C+L+ Sbjct: 316 ILRCLKVMGSYCPSCQYPCFPTDLESPVK----SFLCILN 351
>ILV1_ORYSA (Q6K2E8) Acetolactate synthase 1, chloroplast precursor (EC| 2.2.1.6) (Acetohydroxy-acid synthase 1) Length = 644 Score = 29.3 bits (64), Expect = 5.5 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 10/82 (12%) Frame = -3 Query: 384 ATRLAVNVLWLVSCAARPTERVLDDMVASG----------GVAKLLALLQADGSPSTKEK 235 AT L VL LV + RP V ASG G+ L+ PS Sbjct: 259 ATELLEQVLRLVGESRRPILYVGGGCSASGDELRWFVELTGIPVTTTLMGLGNFPSDDPL 318 Query: 234 VVRMLRVHGAFWRQYPCIPADL 169 +RML +HG + Y ADL Sbjct: 319 SLRMLGMHGTVYANYAVDKADL 340
>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed| Length = 552 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +2 Query: 254 EPSACSSASSFATPPLATMSSSTLSVGRAAHDTSHSTLTASLVA 385 +P SSASS A+PP A+ +S+ S A +S S+ S A Sbjct: 316 QPPLSSSASSLASPPPASNASTISSTSSVATSSSSSSSGCSSAA 359
>CHHA2_BOMMO (P05687) Chorion class high-cysteine HCA protein 12 precursor| (HC-A.12) Length = 124 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/22 (50%), Positives = 11/22 (50%) Frame = -1 Query: 413 CGRCCGCPAWPRGWRSTCCGWC 348 CGRCCGC G CG C Sbjct: 84 CGRCCGCGCGGCGGCGCGCGGC 105
>ILV2_MAIZE (Q41769) Acetolactate synthase 2, chloroplast precursor (EC| 2.2.1.6) (Acetohydroxy-acid synthase 2) Length = 638 Score = 28.9 bits (63), Expect = 7.2 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 10/82 (12%) Frame = -3 Query: 384 ATRLAVNVLWLVSCAARPTERVLDDMVASG----------GVAKLLALLQADGSPSTKEK 235 AT VL LV + RP V ASG G+ L+ PS Sbjct: 253 ATEFLEQVLRLVGESRRPVLYVGGGCAASGEELCRFVELTGIPVTTTLMGLGNFPSDDPL 312 Query: 234 VVRMLRVHGAFWRQYPCIPADL 169 +RML +HG + Y ADL Sbjct: 313 SLRMLGMHGTVYANYAVDKADL 334
>MUTB_RHIME (O86028) Methylmalonyl-CoA mutase (EC 5.4.99.2) (MCM)| Length = 712 Score = 28.5 bits (62), Expect = 9.4 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +2 Query: 65 QFSLYQTVIHPPASLYTCRSSTQILDHLRNLR*SLRSAGMQGYCLQNAPCTLSILTTFSL 244 +F + T I+PP + R I+++ S + GY +Q A TL F+L Sbjct: 191 EFMVRNTYIYPPEP--SMRIVADIIEYTAKEMPKFNSISISGYHMQEAGATLVQELAFTL 248 Query: 245 VDG 253 DG Sbjct: 249 ADG 251
>RELA_SHIFL (P0AG23) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 2 KYQLNLNVQSVHTCSCSTHGFQFSLYQTVIHPPASLYTCR 121 K+ +L + S +C C + + L QT HP ASL R Sbjct: 19 KWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWR 58
>RELA_ECOLI (P0AG20) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 2 KYQLNLNVQSVHTCSCSTHGFQFSLYQTVIHPPASLYTCR 121 K+ +L + S +C C + + L QT HP ASL R Sbjct: 19 KWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWR 58
>RELA_ECOL6 (P0AG21) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 2 KYQLNLNVQSVHTCSCSTHGFQFSLYQTVIHPPASLYTCR 121 K+ +L + S +C C + + L QT HP ASL R Sbjct: 19 KWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWR 58
>RELA_ECO57 (P0AG22) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.5 bits (62), Expect = 9.4 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 2 KYQLNLNVQSVHTCSCSTHGFQFSLYQTVIHPPASLYTCR 121 K+ +L + S +C C + + L QT HP ASL R Sbjct: 19 KWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWR 58
>ANGP2_MOUSE (O35608) Angiopoietin-2 precursor (ANG-2)| Length = 496 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 152 NLR*SLRSAGMQGYCLQNAPCTLSILTTFSLVDGEPSACSSASS 283 N R S+ S G + Y +QN PC+ + L E +C S+SS Sbjct: 21 NFRKSVDSTGRRQYQVQNGPCSYTFLLP------ETDSCRSSSS 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,153,572 Number of Sequences: 219361 Number of extensions: 898856 Number of successful extensions: 3920 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3907 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
