ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart39c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NRG3_HUMAN (P56975) Pro-neuregulin-3, membrane-bound isoform pre... 28 4.6
2MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 28 4.6
3Y1566_ARCFU (O28706) Hypothetical protein AF1566 28 4.6
4NRG3_MOUSE (O35181) Pro-neuregulin-3, membrane-bound isoform pre... 28 7.8
5CHSG_PETHY (P22927) Chalcone synthase G (EC 2.3.1.74) (Naringeni... 28 7.8

>NRG3_HUMAN (P56975) Pro-neuregulin-3, membrane-bound isoform precursor|
           (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)]
          Length = 720

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 23/65 (35%), Positives = 28/65 (43%)
 Frame = +1

Query: 1   TRIMTPCTNVQI*IRASS*LGLATSVTPVPYPIPQKNIFF*QKSSNFAIRPSCEGSPLLQ 180
           TR  T     ++ IRAS     A + T  P  +P     F   SS    RP   G+P  Q
Sbjct: 162 TRAPTRFPGHRVPIRASPRSTTARN-TAAPATVPSTTAPF-FSSSTLGSRPPVPGTPSTQ 219

Query: 181 AMPVW 195
           AMP W
Sbjct: 220 AMPSW 224



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>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 269

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 177 TSNARLGIAAPD*FSLCDRRPSWTDATQCKMMGDG 281
           T+N  L     + F LC R P WT+   C + G G
Sbjct: 120 TANTALRYLVREAFDLCTRDPEWTEGA-CALSGSG 153



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>Y1566_ARCFU (O28706) Hypothetical protein AF1566|
          Length = 263

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 171 ATTSNARLGIAAPD*FSLCDRRPSWTDATQCKMMGDGWVN 290
           A   + RLG A+PD F        WT   QC ++GD +V+
Sbjct: 129 ALPDDIRLGYASPDGFGYS----VWTFIIQCSVLGDEYVD 164



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>NRG3_MOUSE (O35181) Pro-neuregulin-3, membrane-bound isoform precursor|
           (Pro-NRG3) [Contains: Neuregulin-3 (NRG-3)]
          Length = 713

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = +1

Query: 1   TRIMTPCTNVQI*IRASS*LGLATSVTPVPYPIPQKNIFF*QKSSNFAIRPSCEGSPLLQ 180
           TR  T     ++ IRAS     A +    P  +     FF   SS    RP   G+P  Q
Sbjct: 162 TRAPTRFPGHRVPIRASPRSTTARNTAAPPTVLSTTAPFF--SSSTPGSRPPMPGAPSTQ 219

Query: 181 AMPVW 195
           AMP W
Sbjct: 220 AMPSW 224



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>CHSG_PETHY (P22927) Chalcone synthase G (EC 2.3.1.74) (Naringenin-chalcone|
           synthase G)
          Length = 393

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 12  DTMYQCTNMNQSVQLIRLSDISHSCSVSYTAKKYIFLTEILKFRHPPKLRGEPATTSNAR 191
           D +++ T  +   +L       H C  S   K+Y+ LTE +  ++ P +    A + NAR
Sbjct: 38  DFLFRITTSDHKTEL--KEKFKHMCEGSMIKKRYLHLTEEI-LKNNPNICEHKAPSLNAR 94

Query: 192 LGIAAPD 212
             IA  +
Sbjct: 95  QEIAVAE 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,910,537
Number of Sequences: 219361
Number of extensions: 827784
Number of successful extensions: 1849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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