ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart39b11 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 74.3 bits (181), Expect = 1e-13 Identities = 41/98 (41%), Positives = 62/98 (63%) Frame = -1 Query: 472 ASADMVDIHAAVLFEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 293 AS+ M D + + F+AL + NYLR Q+++LTG T+ +D A++ NM+ L+ +G++LL K+ Sbjct: 294 ASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKS 353 Query: 292 VSRVNIDNGMYETVDGAGTNEELLVRFAKRLSEERKLR 179 VS+ D T EE L RFAK LS+ +KLR Sbjct: 354 VSK-----------DNPETYEEALKRFAKLLSDRKKLR 380
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 73.6 bits (179), Expect = 3e-13 Identities = 41/98 (41%), Positives = 60/98 (61%) Frame = -1 Query: 472 ASADMVDIHAAVLFEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 293 AS+ M D + + +F+A + NYLR Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 292 VSRVNIDNGMYETVDGAGTNEELLVRFAKRLSEERKLR 179 VS+ D T EE L RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 73.6 bits (179), Expect = 3e-13 Identities = 41/98 (41%), Positives = 60/98 (61%) Frame = -1 Query: 472 ASADMVDIHAAVLFEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 293 AS+ M D + + +F+A + NYLR Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 292 VSRVNIDNGMYETVDGAGTNEELLVRFAKRLSEERKLR 179 VS+ D T EE L RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 72.8 bits (177), Expect = 4e-13 Identities = 41/98 (41%), Positives = 59/98 (60%) Frame = -1 Query: 472 ASADMVDIHAAVLFEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 293 AS+ M D + + +F+A + NYLR Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344 Query: 292 VSRVNIDNGMYETVDGAGTNEELLVRFAKRLSEERKLR 179 VS+ D T EE L RFAK LS +KLR Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLR 371
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 71.6 bits (174), Expect = 1e-12 Identities = 40/98 (40%), Positives = 59/98 (60%) Frame = -1 Query: 472 ASADMVDIHAAVLFEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 293 AS+ M D + + +F+A + NYLR Q+++L G T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 292 VSRVNIDNGMYETVDGAGTNEELLVRFAKRLSEERKLR 179 VS+ D T EE L RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380
>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)| Length = 335 Score = 32.0 bits (71), Expect = 0.83 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = -1 Query: 430 EALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYE 257 E L+I+ N + T DD G + +A +E I G ++LTKTV + ++GMY+ Sbjct: 139 EFLKIDGNKIHTTDDFRMG----LALAKGNPVELEIKRGNDVLTKTVQPILNESGMYQ 192
>EDG5_RAT (P47752) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (G-protein coupled receptor H218) (AGR16) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +3 Query: 192 SSESLLAKRTSSSSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 365 +S+ L +++L+ P T+S PL F R+ S F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGPVTLSLTPLQWFAREG---SAF--ITLSASVFSLLAIAIE 129
>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1842 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -2 Query: 450 STPPSYLRPS--ALRRTTCAPRTTRSRDKRPRWISPPKRTWRRLLGSVRICSPR 295 S P ++PS + RR+T A R ++PR + PP +TWR + +PR Sbjct: 81 SPPAELVQPSWGSPRRSTEAEARRPPRAQQPRRVQPPAQTWRSRPSGQQQSAPR 134
>R51A1_MOUSE (Q8C551) RAD51-associated protein 1 (RAD51-interacting protein)| (RAB22) Length = 337 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/76 (27%), Positives = 31/76 (40%) Frame = -2 Query: 456 STSTPPSYLRPSALRRTTCAPRTTRSRDKRPRWISPPKRTWRRLLGSVRICSPRPYPG*T 277 S S P + PS R + + KRP+W+ P R + +P P + Sbjct: 254 SPSLPQAVGLPSEATRKPAIMCSPSAESKRPKWVPPAASGSRNSSSNALAGTPAKSPSQS 313 Query: 276 LTMGCMRPSTVLAPMK 229 L +G R LAP+K Sbjct: 314 LRLGLSR----LAPVK 325
>POL2_GCMV (P13026) RNA2 polyprotein (P2) [Contains: P2A protein (2A);| Movement protein (2B-MP); Coat protein (2C-CP)] Length = 1324 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -2 Query: 450 STPPSYLRPSALRRTTCAPRTTRSRDKRPRWISPPKRTWRRLLGSVRICSPRPY 289 S P L P L T A +T R RW+ +TWR +LG V+ C+P + Sbjct: 184 SLPSLPLHPDVLFEGTNAWQT------RLRWL----KTWRHVLGDVKPCTPEKW 227
>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4| (Methionine-requiring protein 4) Length = 672 Score = 29.6 bits (65), Expect = 4.1 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -1 Query: 319 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEELLVRFAKRLS--EERKLRQTNLNS 161 I ++L + RVN+ NG Y ++ AG + + + A ++ ++K+R+ N N+ Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407
>MURA_GEOMG (Q39YP9) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 417 Score = 29.3 bits (64), Expect = 5.4 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 11/81 (13%) Frame = -1 Query: 442 AVLFEALRIEENYLRTQDDSLTGQTSSVDIAT-----KENMEALIGIGKNLL------TK 296 A L +R+E Y+ + L G + DIAT + M A + G+ +L + Sbjct: 131 AALGADIRLEHGYVEAKAKKLKGARINFDIATVGGTEQLMMAAALAKGETILENAAREPE 190 Query: 295 TVSRVNIDNGMYETVDGAGTN 233 + +I N M +DGAGT+ Sbjct: 191 IIDLADILNRMGARIDGAGTD 211
>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (Lysophospholipid receptor B2) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/58 (36%), Positives = 34/58 (58%) Frame = +3 Query: 192 SSESLLAKRTSSSSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 365 +S+ L +++L+ T+S P+ F R+ VS F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGHVTLSLTPVQWFARE---VSAF--ITLSASVFSLLAIAIE 129
>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +2 Query: 278 VYPGYGLGEQILTDPNKRLHVLFGGDIHRGRLSRERVVLGAQVVLLNAEG 427 +YP YGLGE L RL ++GG + E +V +VV + +EG Sbjct: 225 LYPLYGLGE--LPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEG 272
>PROA_LISMO (Q93Q55) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 415 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -1 Query: 352 ATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEELLVRFAKRLSEER 188 +TK+ AL+ + +LLT T S + +N GT E ++ R RL+EER Sbjct: 22 STKQKNAALLNLSNDLLTHTASLLEENNKDIIRAREKGTPETMIDRL--RLTEER 74
>CS120_WHEAT (P46525) Cold-shock protein CS120| Length = 391 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%) Frame = -3 Query: 398 HPGRLAHGTNVLGGYRHQREHGGAYWDR*ESAH-----------QDRIPGKH 276 HPG HG GG Q+ H G AH +D++PG H Sbjct: 38 HPGTATHGAPATGGAYGQQGHAGTTGTGLHGAHAGEKKGVMENIKDKLPGGH 89
>SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 437 Score = 28.9 bits (63), Expect = 7.1 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 465 PTWSTSTPPSYLRPSALRRTTCAPRTTRS 379 P W T+T PS RPS++ + AP +RS Sbjct: 297 PAWVTTTVPSTPRPSSMTKCQRAPWRSRS 325
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 28.9 bits (63), Expect = 7.1 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +1 Query: 169 GWFGAACAPRRASWRSGRAALHWCQHRRRSHTSHCQCLPG 288 GWFG ACA +R S G A C H T C+C PG Sbjct: 931 GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961
>YB30_YEAST (P38125) Hypothetical transport protein YBR180W| Length = 572 Score = 28.9 bits (63), Expect = 7.1 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +3 Query: 198 ESLLAKRTSSSSLVPAPSTVSYIPLSMFTRDTVLV 302 E + K ++S S P+P T ++IP + F++D L+ Sbjct: 77 EEVAVKSSNSQSRDPSPDTQAHIPYTYFSKDQRLI 111
>RS3_CORDI (Q6NJC9) 30S ribosomal protein S3| Length = 248 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -1 Query: 457 VDIHAA---VLFEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIG-IGKNLLTKTV 290 VDIH A ++ E + LRT + LTG+ +++I +N++A + +++ + Sbjct: 65 VDIHTARPGIVIGRRGSEADRLRTSLEKLTGKQVALNILEVKNIDANAQLVAQSIAEQLT 124 Query: 289 SRVNIDNGMYETVDGA 242 +RV M + + GA Sbjct: 125 NRVAFRRAMRKAIQGA 140
>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -1 Query: 415 EENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVN 278 E ++LR D L +T S+ +ATKENM + G+ K++ +K + N Sbjct: 166 EHDHLRNSD-RLIEETISIAMATKENMTSQRGMLKSIHSKMNTLAN 210
>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1| Length = 248 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -1 Query: 415 EENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVN 278 E ++LR D L +T S+ +ATKENM + G+ K++ +K + N Sbjct: 164 EHDHLRNSD-RLIEETISIAMATKENMTSQRGMLKSIHSKMNTLAN 208
>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -1 Query: 415 EENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVN 278 E ++LR D L +T S+ +ATKENM + G+ K++ +K + N Sbjct: 166 EHDHLRNSD-RLIEETISIAMATKENMTSQRGMLKSIHSKMNTLAN 210
>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -1 Query: 415 EENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVN 278 E ++LR D L +T S+ +ATKENM + G+ K++ +K + N Sbjct: 166 EHDHLRNSD-RLIEETISIAMATKENMTSQRGMLKSIHSKMNTLAN 210
>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/46 (36%), Positives = 28/46 (60%) Frame = -1 Query: 415 EENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVN 278 E ++LR D L +T S+ +ATKENM + G+ K++ +K + N Sbjct: 166 EHDHLRNSD-RLIEETISIAMATKENMTSQRGMLKSIHSKMNTLAN 210
>ATHB5_ARATH (P46667) Homeobox-leucine zipper protein ATHB-5 (HD-ZIP protein| ATHB-5) Length = 312 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = -1 Query: 433 FEALRIEENYLRTQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTV 290 F+AL+ + L+ +DSL GQ ++ K N+E + GI +N K V Sbjct: 140 FDALKRNRDSLQRDNDSLLGQIK--ELKAKLNVEGVKGIEENGALKAV 185
>ATPA_BUCBP (Q89B41) ATP synthase alpha chain (EC 3.6.3.14) (ATP synthase F1| sector alpha subunit) Length = 514 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Frame = -1 Query: 463 DMVDIHAAVLFEALRIEENYLR----TQDDSLTGQTSSVDIATKENMEALIGIGKNLLTK 296 D+ +HA +L A R+ NYL+ T + TG +++ I ++ + I N+++ Sbjct: 289 DIFYLHARLLERACRVNSNYLKNILGTVNKFSTGSLTALPIIETQDGDVSSFIPTNVISI 348 Query: 295 TVSRVNIDNGMYET 254 T ++ +++ ++ + Sbjct: 349 TDGQIFLESNLFNS 362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,089,766 Number of Sequences: 219361 Number of extensions: 1300940 Number of successful extensions: 4364 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4355 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
